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Jump to SCOP summary stats for T0100...

Top superfamilies by number of methods finding them in first 20 hits found

Top families by number of methods finding them in first 20 hits found

Top superfamilies by sum(1/ranks) in first 20 hits found

Top families by sum(1/ranks) in first 20 hits found

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SCOP-ified results from servers

pdg

phd

seq

123d

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
d1air__ 1.002.075.001 Pectin lyase-like
d1bhe__ 1.002.075.001 Pectin lyase-like
d1czfa_ 1.002.075.001 Pectin lyase-like
d1ax0__ 1.002.028.001 ConA-like lectins/glucanases
d1lu1__ 1.002.028.001 ConA-like lectins/glucanases
d1bn8a_ 1.002.075.001 Pectin lyase-like
d2ltn 1.002.028.001 ConA-like lectins/glucanases
d1qcxa_ 1.002.075.001 Pectin lyase-like
d1gc1g_ 1.004.150.001 gp120 core
d3tdt__ 1.002.076.001 Trimeric LpxA-like enzymes
d1qrea_ 1.002.076.001 Trimeric LpxA-like enzymes
d1tml__ 1.003.005.001 Cellulases
d1ffh_2 1.003.031.001 P-loop containing nucleotide triphosphate hydrolases
d1qtfa_ 1.002.044.001 Trypsin-like serine proteases
d1fmca_ 1.003.002.001 NAD(P)-binding Rossmann-fold domains
d1pdkb_ 1.002.002.003 Bacterial adhesins
d1ex1a2 1.003.016.010 Beta-D-glucan exohydrolase, C-terminal domain
d1fts_2 1.003.031.001 P-loop containing nucleotide triphosphate hydrolases
d1kao__ 1.003.031.001 P-loop containing nucleotide triphosphate hydrolases
d1b3qa2 1.002.038.006 Histidine kinase CheA, C-terminal domain

fams

ffas

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1pcl_ 1.002.075.001 Pectin lyase-like
1czfA 1.002.075.001 Pectin lyase-like
1bn8_ 1.002.075.001 Pectin lyase-like
1qcxA 1.002.075.001 Pectin lyase-like
1bhe_ 1.002.075.001 Pectin lyase-like
1rmg_ 1.002.075.001 Pectin lyase-like
1bv5_ unknown  
1ncoA 1.002.001.007 Actinoxanthin-like
1doaA 1.003.031.001 P-loop containing nucleotide triphosphate hydrolases
1dbgA 1.002.075.001 Pectin lyase-like
1pnnC unknown  
1edn_ 1.010.027.001 Endothelin-like
1pluA 1.002.075.001 Pectin lyase-like
1qrdA 1.003.016.004 Flavoproteins
1bq5_ 1.002.005.001 Cupredoxins
1dfx_ 1.002.001.012 1.007.039.004  
1cd3F 1.002.009.001 Viral coat and capsid proteins
1a14N 1.002.063.001 Sialidases (neuraminidases)
1vrkB unknown  
1gff1 1.002.009.001 Viral coat and capsid proteins

rpfold

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
2PEC 1.002.075.001 Pectin lyase-like
1TOH 1.004.155.001 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
1ZAP 1.002.047.001 Acid proteases
2TOH 1.004.155.001 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
1SIG 1.001.105.001 sigma70 subunit fragment from RNA polymerase

pmap

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1BF2 1.002.001.001 1.002.066.001 1.003.001.007  
1EV1 1.002.009.001 Viral coat and capsid proteins
1B35 1.002.009.001 Viral coat and capsid proteins
1EGD 1.001.025.006 1.005.006.001  
1EGE 1.001.025.006 1.005.006.001  

prof

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
138Mv7 unknown  

pssp

jpred2

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
d6T5222 unknown  

prof2

nanoworld

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
26c547 unknown  
9EDB5 unknown  

samt98

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1lefA unknown  
1rmg 1.002.075.001 Pectin lyase-like
1bfd 1.003.026.001 1.003.030.001  
1alkA 1.003.070.001 Phosphatase/sulphatase
1pcl 1.002.075.001 Pectin lyase-like
2omf 1.006.004.003 Porins
1mrp 1.003.089.001 Periplasmic binding protein-like II
1cnr 1.007.013.001 Crambin-like
1cbn 1.007.013.001 Crambin-like
1sriA 1.002.057.001 Avidin/streptavidin
1crn 1.007.013.001 Crambin-like
1arb 1.002.044.001 Trypsin-like serine proteases
1tf4A 1.001.097.001 1.002.002.002  
1bmv2 1.002.009.001 Viral coat and capsid proteins
3fib 1.004.149.001 Fibrinogen C-terminal domains
1idk 1.002.075.001 Pectin lyase-like
2ligA 1.001.025.002 Aspartate receptor, ligand-binding domain
1fib 1.004.149.001 Fibrinogen C-terminal domains
1fnf 1.002.001.002 Fibronectin type III
2tysB 1.003.073.001 Tryptophan synthase beta subunit-like PLP-dependent enzymes

foresst

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1air 1.002.075.001 Pectin lyase-like
1rmg_1 unknown  
1tsp_1 unknown  
1air_ 1.002.075.001 Pectin lyase-like

pdbblast

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1ev1_1 1.002.009.001 Viral coat and capsid proteins
1iiv_B unknown  
1iiv_A unknown  
4pbg_B 1.003.001.007 Glycosyltransferases
1pbg_A 1.003.001.007 Glycosyltransferases
4ubp_C unknown  
1ubp_C 1.002.086.001 1.003.001.008  
1cov_1 1.002.009.001 Viral coat and capsid proteins
1gc1_G 1.004.150.001 gp120 core
1ciy_ 1.002.017.001 1.002.072.002 1.006.001.003  
1acx_ 1.002.001.007 Actinoxanthin-like
2liv_ 1.003.088.001 Periplasmic binding protein-like I
1jdc_ 1.002.066.001 1.003.001.007  
1qi5_A 1.002.066.001 1.003.001.007  
1jdd_ 1.002.066.001 1.003.001.007  

sdsc1

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
c81sHw unknown  

sspro

sspsi

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
d1nira2 1.002.065.002 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
d1idja_ 1.002.075.001 Pectin lyase-like
d1aofa2 1.002.065.002 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
d1air__ 1.002.075.001 Pectin lyase-like
d1a14n_ 1.002.063.001 Sialidases (neuraminidases)
d1eur__ 1.002.063.001 Sialidases (neuraminidases)
d1rmg__ 1.002.075.001 Pectin lyase-like
d4aaha_ 1.002.065.001 Methanol dehydrogenase, heavy chain
d1gof_3 1.002.064.001 Galactose oxidase, central domain
d1inga_ 1.002.063.001 Sialidases (neuraminidases)

pred2ary

sausage

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1tubB 1.003.027.001 1.004.064.002  
1qq4A 1.002.044.001 Trypsin-like serine proteases
1rypD 1.004.132.001 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
2qwc_ 1.002.063.001 Sialidases (neuraminidases)
1cb6A 1.003.089.001 Periplasmic binding protein-like II
1bwz_ 1.004.019.001 Diaminopimelate epimerase
1qgxA 1.005.007.001 Sugar phosphatases
1thv_ 1.002.024.001 Osmotin, thaumatin-like protein
1eceA 1.003.001.007 Glycosyltransferases
1gdoA 1.004.132.001 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
2glsD 1.004.013.009 1.004.107.001  
1jdw_ 1.004.105.001 Amidinotransferase
1bruP 1.002.044.001 Trypsin-like serine proteases
5ptp_ 1.002.044.001 Trypsin-like serine proteases
1tfb_ 1.001.072.001 Cyclin-like
2ohxA 1.002.033.001 1.003.002.001  
1qorA 1.002.033.001 1.003.002.001  
1fnf_ 1.002.001.002 Fibronectin type III
1bgp_ 1.001.089.001 Heme-dependent peroxidases
1qd1A 1.004.048.028 Formyl/formiminotransferase

fugue

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
131yo unknown  
d1d4aa 1.003.016.004 Flavoproteins
d1ospo 1.002.071.001 Outer surface protein A
d1din 1.003.064.001 alpha/beta-Hydrolases
d1qfma2 1.003.064.001 alpha/beta-Hydrolases
1dbg_A 1.002.075.001 Pectin lyase-like
1d0v_A 1.003.033.001 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
1d4a_A 1.003.016.004 Flavoproteins
1osp_O 1.002.071.001 Outer surface protein A
1oela 1.001.120.001 1.003.007.005 1.004.047.001  
1a6da 1.001.120.001 1.003.007.005 1.004.047.001  
1oel_A 1.001.120.001 1.003.007.005 1.004.047.001  
1din 1.003.064.001 alpha/beta-Hydrolases
1irax 1.002.040.001 Cytokine
1afca 1.002.040.001 Cytokine
2afga 1.002.040.001 Cytokine
2fgf 1.002.040.001 Cytokine
2mib 1.002.040.001 Cytokine
1i1b 1.002.040.001 Cytokine
1ira_X 1.002.040.001 Cytokine

target99

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1aqh 1.002.066.001 1.003.001.007  
1aqm 1.002.066.001 1.003.001.007  
1b0iA 1.002.066.001 1.003.001.007  
4nn9 1.002.063.001 Sialidases (neuraminidases)
1nccN 1.002.063.001 Sialidases (neuraminidases)
1ncdN 1.002.063.001 Sialidases (neuraminidases)
1nmaN 1.002.063.001 Sialidases (neuraminidases)
1bn8A 1.002.075.001 Pectin lyase-like
2qwa 1.002.063.001 Sialidases (neuraminidases)
2qwb 1.002.063.001 Sialidases (neuraminidases)
2qwc 1.002.063.001 Sialidases (neuraminidases)
2qwd 1.002.063.001 Sialidases (neuraminidases)
2qwe 1.002.063.001 Sialidases (neuraminidases)
2qwf 1.002.063.001 Sialidases (neuraminidases)
2qwg 1.002.063.001 Sialidases (neuraminidases)
2qwh 1.002.063.001 Sialidases (neuraminidases)
1a14N 1.002.063.001 Sialidases (neuraminidases)
1bji 1.002.063.001 Sialidases (neuraminidases)
1mwe 1.002.063.001 Sialidases (neuraminidases)
1nmcA 1.002.063.001 Sialidases (neuraminidases)

jigsaw

inbgu

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
2bbkh 1.002.064.002 Methylamine dehydrogenase, H-chain
1rmg 1.002.075.001 Pectin lyase-like
1bhe 1.002.075.001 Pectin lyase-like
1arb 1.002.044.001 Trypsin-like serine proteases
1aoma 1.002.065.002 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
2pec 1.002.075.001 Pectin lyase-like
1aoza_ 1.002.005.001 Cupredoxins
2aaib 1.002.040.002 Ricin B-like
1qiua 1.002.020.001 1.002.078.001  
1nfka 1.002.001.001 1.002.002.005  
5nn9 1.002.063.001 Sialidases (neuraminidases)
1nlr 1.002.028.001 ConA-like lectins/glucanases
2sim 1.002.063.001 Sialidases (neuraminidases)
1ndx unknown  
1idja 1.002.075.001 Pectin lyase-like
1lpx unknown  
2er7e 1.002.047.001 Acid proteases
1mfa 1.002.001.001 Immunoglobulin
1fnh 1.002.001.002 Fibronectin type III
1nsba 1.002.063.001 Sialidases (neuraminidases)

psipred

isites2

threadwithseq

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1eur 1.002.063.001 Sialidases (neuraminidases)
1bhgA 1.002.001.004 1.002.017.001 1.003.001.007  
1cnv 1.003.001.007 Glycosyltransferases
2ebn 1.003.001.007 Glycosyltransferases
1gen 1.002.061.001 Hemopexin-like domain
2bbkH 1.002.064.002 Methylamine dehydrogenase, H-chain
1bu6O 1.003.050.001 Actin-like ATPase domain
1mdl 1.003.001.010 1.004.045.001  
1ytn0 1.003.040.001 (Phosphotyrosine protein) phosphatases II

genthreader

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1dbgA 1.002.075.001 Pectin lyase-like
1dabA 1.002.075.001 Pectin lyase-like
1qba04 1.002.001.001 1.002.002.002 1.003.001.007 1.004.076.002  
1by5A 1.006.004.003 Porins
1pcl0 1.002.075.001 Pectin lyase-like
1kapP 1.002.074.001 1.004.076.001  
1akp0 1.002.001.007 Actinoxanthin-like
1clc02 1.001.097.001 1.002.001.001  
1ospO 1.002.071.001 Outer surface protein A

mgenthreader

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1dbgA 1.002.075.001 Pectin lyase-like
1dabA 1.002.075.001 Pectin lyase-like
1qba04 1.002.001.001 1.002.002.002 1.003.001.007 1.004.076.002  
1by5A 1.006.004.003 Porins
1pcl0 1.002.075.001 Pectin lyase-like
1kapP 1.002.074.001 1.004.076.001  
1akp0 1.002.001.007 Actinoxanthin-like
1noa0 1.002.001.007 Actinoxanthin-like
1bf203 1.002.001.001 1.002.066.001 1.003.001.007  

3dpssm

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
d1idk__ 1.002.075.001 Pectin lyase-like
c1lrxb_ unknown  
c1qunb_ 1.002.001.010 1.002.002.003 1.002.006.002  
d1air__ 1.002.075.001 Pectin lyase-like
d1czfa_ 1.002.075.001 Pectin lyase-like
d1pcl__ 1.002.075.001 Pectin lyase-like
c1qrnd_ 1.002.001.001 1.004.017.001  
d1bhe__ 1.002.075.001 Pectin lyase-like
d1ospo_ 1.002.071.001 Outer surface protein A
c2vitb_ 1.002.001.001 1.002.018.001  
c1lpxa_ unknown  
d1qlga_ 1.002.063.003 3-phytase
c1lgca_ 1.002.028.001 ConA-like lectins/glucanases
d1bn8a_ 1.002.075.001 Pectin lyase-like
d1nls__ 1.002.028.001 ConA-like lectins/glucanases
d1acx__ 1.002.001.007 Actinoxanthin-like
d1ah1__ 1.002.001.001 Immunoglobulin
c1bd2d_ 1.002.001.001 1.004.017.001  
d1qhva_ 1.002.020.001 Adenovirus fiber protein head domain (knob domain)
c2bqpa_ 1.002.028.001 ConA-like lectins/glucanases

loopp

domain/chain    SCOP superfamily Superfamily desciption (if not ambiguous)
1pov_0 1.002.009.001 Viral coat and capsid proteins
1trb 1.003.003.001 FAD/NAD(P)-binding domain
1fgs 1.003.054.001 1.003.067.002  
1ki2_A 1.003.031.001 P-loop containing nucleotide triphosphate hydrolases
1bt9 1.006.004.003 Porins
1mxb 1.004.109.001 S-adenosylmethionine synthetase. MAT
2sil 1.002.063.001 Sialidases (neuraminidases)
1leh_A 1.003.002.001 1.003.053.001  
2bpa1 1.002.009.001 Viral coat and capsid proteins
1esf_A 1.002.038.002 1.004.013.007  
1ao7_E 1.002.001.001 Immunoglobulin
1ivh_A 1.001.025.006 1.005.006.001  
4fabL 1.002.001.001 Immunoglobulin
5tmnE 1.001.067.001 1.004.076.001  
1fok_A 1.001.004.004 1.003.047.001  
1mioA 1.003.081.001 Nitrogenase iron-molybdenum protein, alpha and beta chains
1aonA 1.001.120.001 1.003.007.005 1.004.047.001  
1ezm 1.001.067.001 1.004.076.001  
1lla 1.001.081.001 1.001.082.001 1.002.001.001  
6ddd unknown  

cornet

SCOP summary statistics for T0100  

Top superfamilies by number of methods finding them in first 20 hits found  

Superfamily      number of methods    methods
1.002.075.001 12 123d 3dpssm ffas foresst fugue genthreader inbgu mgenthreader rpfold samt98 sspsi target99
1.002.063.001 7 ffas inbgu loopp sausage sspsi target99 threadwithseq
1.003.001.007 7 genthreader mgenthreader pdbblast pmap sausage target99 threadwithseq
1.002.001.001 6 3dpssm genthreader inbgu loopp mgenthreader pmap
1.002.009.001 5 ffas loopp pdbblast pmap samt98
1.002.001.007 5 3dpssm ffas genthreader mgenthreader pdbblast
1.006.004.003 4 genthreader loopp mgenthreader samt98
1.002.044.001 4 123d inbgu samt98 sausage
1.002.066.001 4 mgenthreader pdbblast pmap target99
1.002.071.001 3 3dpssm fugue genthreader
1.002.001.002 3 inbgu samt98 sausage
1.002.002.002 3 genthreader mgenthreader samt98
1.003.002.001 3 123d loopp sausage
1.003.031.001 3 123d ffas loopp
1.004.076.001 3 genthreader loopp mgenthreader
1.002.028.001 3 123d 3dpssm inbgu
1.001.120.001 2 fugue loopp
1.005.006.001 2 loopp pmap
1.002.047.001 2 inbgu rpfold
1.003.007.005 2 fugue loopp

Top families by number of methods finding them in first 20 hits found  

Family                               number of methods    methods
1.002.075.001.001 11 123d 3dpssm ffas foresst genthreader inbgu mgenthreader rpfold samt98 sspsi target99
1.002.063.001.001 7 ffas inbgu loopp sausage sspsi target99 threadwithseq
1.002.075.001.004 6 123d 3dpssm ffas inbgu samt98 sspsi
1.002.075.001.002 6 123d 3dpssm ffas inbgu samt98 sspsi
1.002.001.001.005 5 genthreader inbgu loopp mgenthreader pmap
1.002.001.007.001 5 3dpssm ffas genthreader mgenthreader pdbblast
1.003.001.007.001 4 mgenthreader pdbblast pmap target99
1.002.066.001.001 4 mgenthreader pdbblast pmap target99
1.002.044.001.001 4 123d inbgu samt98 sausage
1.002.075.001.006 4 ffas fugue genthreader mgenthreader
1.002.071.001.001 3 3dpssm fugue genthreader
1.002.001.001.001 3 3dpssm inbgu loopp
1.002.001.002.001 3 inbgu samt98 sausage
1.002.009.001.004 3 loopp pdbblast pmap
1.004.076.001.004 2 genthreader mgenthreader
1.004.150.001.001 2 123d pdbblast
1.001.120.001.001 2 fugue loopp
1.002.074.001.001 2 genthreader mgenthreader
1.002.009.001.001 2 ffas loopp
1.003.031.001.007 2 123d ffas

Top superfamilies by sum(1/ranks) in first 20 hits found  

Superfamily      sum(1/ranks)    methods
1.002.075.001 16 123d 3dpssm ffas foresst fugue genthreader inbgu mgenthreader rpfold samt98 sspsi target99
1.003.001.007 5.9 genthreader mgenthreader pdbblast pmap sausage target99 threadwithseq
1.002.063.001 3.8 ffas inbgu loopp sausage sspsi target99 threadwithseq
1.002.009.001 3.3 ffas loopp pdbblast pmap samt98
1.002.066.001 3.2 mgenthreader pdbblast pmap target99
1.002.001.001 2.7 3dpssm genthreader inbgu loopp mgenthreader pmap
1.002.065.002 1.5 inbgu sspsi
1.003.016.004 1.2 ffas fugue
1.002.064.002 1.2 inbgu threadwithseq
1.002.044.001 1.1 123d inbgu samt98 sausage
1.003.027.001 1 sausage
1.004.064.002 1 sausage
1.006.004.003 0.9 genthreader loopp mgenthreader samt98
1.002.028.001 0.9 123d 3dpssm inbgu
1.002.071.001 0.86 3dpssm fugue genthreader
1.002.001.007 0.75 3dpssm ffas genthreader mgenthreader pdbblast
1.004.155.001 0.75 rpfold
1.002.002.002 0.75 genthreader mgenthreader samt98
1.003.064.001 0.67 fugue
1.004.076.002 0.67 genthreader mgenthreader

Top families by sum(1/ranks) in first 20 hits found  

Family                               sum(1/ranks)    methods
1.002.075.001.001 6.9 123d 3dpssm ffas foresst genthreader inbgu mgenthreader rpfold samt98 sspsi target99
1.002.075.001.004 4.1 123d 3dpssm ffas inbgu samt98 sspsi
1.002.063.001.001 3.8 ffas inbgu loopp sausage sspsi target99 threadwithseq
1.002.066.001.001 3.2 mgenthreader pdbblast pmap target99
1.003.001.007.001 3.2 mgenthreader pdbblast pmap target99
1.002.009.001.004 2.7 loopp pdbblast pmap
1.002.075.001.006 2.3 ffas fugue genthreader mgenthreader
1.002.001.001.005 2.1 genthreader inbgu loopp mgenthreader pmap
1.002.075.001.002 2 123d 3dpssm ffas inbgu samt98 sspsi
1.002.065.002.001 1.5 inbgu sspsi
1.003.016.004.003 1.2 ffas fugue
1.002.064.002.001 1.2 inbgu threadwithseq
1.003.027.001.001 1 sausage
1.004.064.002.001 1 sausage
1.002.075.001.005 1 genthreader mgenthreader
1.002.044.001.001 0.91 123d inbgu samt98 sausage
1.002.071.001.001 0.86 3dpssm fugue genthreader
1.003.001.007.004 0.83 pdbblast
1.002.028.001.001 0.82 123d 3dpssm
1.004.155.001.001 0.75 rpfold
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