Under Construction
Supplementary data accompanying the paper:
"Discovering Rules for protein-ligand specificity using support vector inductive logic programming"
Progol may be downloaded here
SVM light may be downloaded here
The main progol program used for learning rules in this paper can be found in version_1.pl
Other files required include:
protein_list_training.pl - List of training dataprotein identifiers used for training
fad_training.pl - Pairwise distance info for FAD binding sites
nad_training.pl - Pairwise distance info for NAD binding sites
posneg_training_reversed.pl - Positive/negative example assignment
amino_properties3.pl - Simple biophysical properties of the amino acids
To learn the rules for this leave-one-out replicate, one would run:
progol version_1.pl
The top 1000 rules produced for this run are available in 1000_rules.pl