HHsearch 1.5 NAME d3cx5f1 FAM FILE d3cx5f1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d3cx5f1.a3m DATE Mon Mar 8 23:42:57 2010 LENG 74 match states, 74 columns in multiple alignment FILT 55 out of 59 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.3 EVD 0.4486 0.3445 SEQ >ss_dssp CCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHSTTGGGCCSCCCCHHHHHHHHHHHHHHHHHHHGGGCC >sa_dssp EEDCCDDBCDEBCECEEADDCCEEDDDACEDBEECDEDEECEEDEEDDEBDECDEEBCECADEBAEEDBEEEDE >ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCC >ss_conf 97715898798515544489999999999999631002356677776666899999999997102489997549 >Consensus lVDpxxxLrexCxxxxxCxxxxxxyxeCxeRVxsxxxxxgxxxxxxxExCxeExfdlxhCvDxCvapkLFxxLK >d3cx5f1 VTDQLEDLREHFKNTEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHYLDTATAPRLFDKLK >UniRef50_B6JY31(211-279:279) Predicted protein n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JY31_SCHJY E=7e-11 s/c=0.99 id=30% cov=95% LVDPLEHFTEVCMNSPQCVHEKEVFDECVARVTKKEEE-----GDTSENCIEEFFHLYKCARNCAMPKAFAELK >UniRef50_B8P6L3(538-633:633) Predicted protein n=2 Tax=Postia placenta Mad-698-R RepID=B8P6L3_POSPM E=1e-12 s/c=0.77 id=38% cov=89% --DILPALREECEQSAKCLAATKHFQHCEEKVNAGK-------GYAHEDCTEEFctyplmtsvrytdlLHergstyrpagnactlrkLTWHFQGCVAPKL FAKLK >UniRef50_B9PV43(212-275:275) Ubiquinol-cytochrome C reductase, putative n=2 Tax=Toxoplasma gondii RepID=B9PV43_TOXGO E=1e-10 s/c=1.06 id=25% cov=88% LVDPRQKLEPGC--TARCSLWVNEYDACTKRVRARTDNKG--------NCSGQYEELHVCIDRCVAKDIFKYLK >UniRef50_Q27345(20-84:125) Filarial common antigen protein (Fragment) n=1 Tax=Dirofilaria immitis RepID=Q27345_DIRIM E=5e-06 s/c=0.80 id=28% cov=88% VVDALIKFREEC--IAQTGKWKKIcWDEVYGRVNSK--------ISTKESCHYEMVDYIQALDHCAMPKVFATLK >UniRef50_Q4Q603(77-141:141) Ubiquinol-cytochrome-c reductase-like protein n=5 Tax=Trypanosomatidae RepID=Q4Q603_LEIMA E=1e-11 s/c=1.09 id=29% cov=89% -VDIKLDLEKECL-ANECVKKVGAYNACLERIKTVS-------PEKEPHCYNQYFAIVHCVDVCVDPKLWPTLK >UniRef50_UPI0001791EDB(30-95:95) PREDICTED: similar to CG41623 CG41623-PA n=1 Tax=Acyrthosiphon pisum RepID=UPI0001791EDB E=2e-10 s/c=1.02 id=31% cov=91% LVDPAKVLRAKCEQQKEAQERFAKLQECNTRVNSRKA--------TAETCVEEFWDFLEVVDKCVAKDLFDHLK >UniRef50_B8CBP1(17-78:78) Ubiquinol cytochrome c reductase (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8CBP1_THAPS E=5e-09 s/c=1.00 id=32% cov=85% VVDHLPQLKASC--AKHCPAQKKEYDACVNRITKLGEG----------DCEAWYFDLLHCVDHCVAPQAFKKLK >UniRef50_C1BSF9(26-90:90) Cytochrome b-c1 complex subunit 6, mitochondrial n=1 Tax=Lepeophtheirus salmonis RepID=C1BSF9_9MAXI E=4e-08 s/c=0.91 id=26% cov=89% LVDPAVEIKERCKTQA-CTSYVTRLETCNDRVNSKSK--------TSETCLEEIMDLVHCIDHCASPQVIKLCK >UniRef50_B6U556(7-61:102) Ubiquinol-cytochrome c reductase complex 7.8 kDa protein n=1 Tax=Zea mays RepID=B6U556_MAIZE E=3e-07 s/c=1.03 id=25% cov=76% -VDQKNYLEERCK--PQCVKTLYDYEKCVKRVES--------DGSGQKHCTGQYFDYWSCVDKCVS-------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * V 1 * * * * * * * 3032 * 960 3807 * * * * * * 1774 * * 1 0 * * * * * * 3753 0 0 T 2 * * * * * * * * * * 5135 * * * * * 3491 180 * * 2 0 * * * * * * 4046 0 0 D 3 * * 0 * * * * * * * * * * * * * * * * * 3 0 * * * * * * 4334 0 0 Q 4 4869 * * * * * 5427 3078 * * * * 721 2489 * 5680 * 5661 * * 4 0 * * * * * * 4380 0 0 L 5 4369 * * * * * * 5950 2053 1253 3335 * * 3769 3288 * * * * * 5 0 * * * * * * 4332 0 0 E 6 4534 * 2281 2186 * * * 3871 3660 4089 * 6306 2851 5504 5754 * 3717 4128 * * 6 0 * * * * * * 4332 0 0 D 7 2522 * 3590 3166 * 5614 4698 * 2449 * * 6338 * 4251 * 5938 3231 3101 * 3556 7 0 * * * * * * 4374 0 0 L 8 * * * * 3797 * * 2767 * 610 4027 * * * * * * 4478 * 5676 8 0 * * * * * * 4482 0 0 R 9 * * * 1942 * * * * 2632 5329 * * * * 1014 * 4095 * * * 9 0 * * * * * * 4482 0 0 E 10 4181 * 4658 737 * * 6106 * 2803 * * * 3288 4974 * * * 6212 * * 10 0 * * * * * * 4490 0 0 H 11 4639 * * 1441 * 5589 4526 * 2558 * * 5974 4807 4351 3480 2984 5693 5530 * * 11 0 * * * * * * 4490 0 0 F 12 5248 84 * * 5056 * * * * * * * * * * * * * * * 12 235 * 2734 * * * * 4490 0 0 K 13 2698 * * 2493 * 3580 * * 2104 3388 4293 * * 3743 3532 5761 5273 * * * 13 357 * 2188 * * * 0 4255 0 2463 N 14 4578 * 4012 2691 * 5114 5183 * 3158 * * 2007 * 3184 5373 5120 4909 2969 * * 14 224 * 2800 * * 727 1337 3874 0 3235 T 15 2188 * * * * * 4919 3207 3713 4711 * 5591 * 4102 * 1796 2663 * * * 15 0 * * * * 567 1621 4327 0 2684 E 16 2055 * * 2660 * 3784 5171 * 3189 * * 3695 1933 * * 4263 * * * * 16 68 * 4435 * * 0 * 4451 0 1887 E 17 4526 * 3854 2412 * * 2109 * 1817 * * * * 3365 5554 4973 6227 5613 * * 17 0 * * * * 0 * 4459 0 1522 G 18 3682 318 * * * 5146 * 5256 * * * * * * * * 4447 5692 * * 18 0 * * * * * * 4539 0 0 K 19 2069 * * 5406 * 4447 5423 5976 2707 5572 * 5122 4544 5705 * 2918 4045 2357 * * 19 0 * * * * * * 4539 0 0 A 20 2791 * 5423 2914 * * 3184 * 2188 5598 * 5719 2476 4361 4601 4041 * * * * 20 0 * * * * * * 4539 0 0 L 21 3467 * * 5535 3011 * 5800 * 4201 2126 5944 * 3762 5014 5705 5406 5167 5684 2977 3005 21 0 * * * * * * 4539 0 0 V 22 4855 * 5606 * 4192 6087 * * 1954 2426 5933 5663 * 5944 3788 * 4137 2352 5317 5120 22 0 * * * * * * 4539 0 0 H 23 4251 * 4458 2652 * 5286 2037 5817 2371 3804 * 3535 * * 6362 5692 4333 * * 5402 23 0 * * * * * * 4539 0 0 H 24 3472 * 6419 2286 * * 1741 4347 2437 3873 * * * * 3827 * * 5535 * * 24 44 5069 * 0 * * * 4539 1000 0 Y 25 * * * * 2276 * * * * 1712 * * * * * * * * 5069 1125 25 0 * * * * * * 4539 0 0 E 26 4885 * 1902 1733 * * 4615 * * * 4892 2916 * 2677 * 6082 5663 * * * 26 0 * * * * * * 4539 0 0 E 27 2033 * 6389 1206 * 5122 3765 * 4643 6227 * 5028 * 4274 * * 4597 5014 * * 27 0 * * * * * * 4539 0 0 C 28 * 44 * * * * * * * * * * * * * * * 5069 * * 28 0 * * * * * * 4539 0 0 A 29 4491 * 6227 3503 * 5318 * 4094 * 3682 * 2351 * 4251 * 5982 3259 1767 * 5069 29 0 * * * * * * 4539 0 0 E 30 3768 * 2093 1340 * 5069 * * 3069 * * 4530 * 5350 * 5168 4250 * * * 30 0 * * * * * * 4539 0 0 R 31 * * * * * * * * 3765 * * * * * 110 * * * * * 31 37 * 5318 * * * * 4539 0 0 V 32 * * * * * * * 2843 * * * * * * * * 5774 248 * * 32 0 * * * * * 0 4510 0 1000 K 33 * * * 3319 * 4600 5836 * 2597 * * 1965 * 4013 3596 3899 2266 * * * 33 136 * 3478 * * * 0 4510 0 1000 I 34 2606 * * 5826 * 6085 5672 4827 2468 5369 5233 * * * 4668 1298 5124 4562 * * 34 107 * 3808 * * * 0 4436 0 2196 Q 35 3802 * * 4313 * 3245 * * 2085 5408 * 5648 * 3705 1409 * * 4641 * * 35 82 * 4183 * * * 0 4327 0 2500 Q 36 5261 * * 4392 * 4227 * * 3502 * * 4375 * 2000 * 1548 3057 5358 * * 36 336 * 2268 * * * 0 4261 0 2919 Q 37 5257 * 3018 1387 * 4065 * * 2457 * * * * 2625 * 5137 * 4814 * * 37 618 * 1521 * * * 0 4028 0 3663 Q 38 4563 * 2667 2722 3529 2115 * * 3538 * * 3514 * 2666 * * * * * * 38 249 * 2655 * * * 0 3491 0 3864 P 39 3071 * 4115 2761 * * * 3342 3226 * * * 1559 * 2933 * * * * * 39 120 * 3653 * * 3687 117 3279 0 3990 G 40 * * 2082 * * 583 * * 3379 * * * * * * * * * * * 40 632 * 1495 * * 4293 76 3212 0 3893 Y 41 * * * * 2001 3947 * * * * * * * * * 2717 * * * 907 41 0 * * * * 2810 222 2528 0 4108 A 42 2210 * 3286 3399 * 1830 * * 2178 * * * * * * * * 3566 * * 42 0 * * * * 3228 163 3238 0 4157 D 43 * * 1517 2514 * 2086 3486 * * * * * 3654 3810 * * * * * * 43 58 * 4672 * * 1955 430 3387 0 4085 L 44 3195 * 3958 2837 * 2680 * 3898 3779 3548 * * 2745 * * 2680 * * * * 44 91 * 4025 * * 2916 205 3918 0 3467 E 45 * * 1752 2330 * * 3299 * * * * 3140 5256 * 4636 2986 4284 * * 4464 45 0 * * * * 877 1135 4145 0 3406 H 46 5008 4428 * * * 3126 4125 * 3424 4261 * 5601 5090 * * * 1140 * * 3299 46 0 * * * * 1998 416 4391 0 2676 K 47 4117 * * 1935 * * 3007 * 1868 6273 * * * 4114 6024 3798 3612 4544 * * 47 0 * * * * 1737 514 4377 0 2696 E 48 * * * 364 * * * * 3206 * * * 3947 4325 * * * * * * 48 74 4325 * 0 * 313 2358 4383 1000 2328 D 49 * * 1678 4309 * * 2267 * * * * 3043 * * * 3481 2196 * * * 49 0 * * * * 0 * 4476 0 1000 C 50 * 51 * * * * * * * 4855 * * * * * * * * * * 50 0 * * * * * * 4539 0 0 V 51 5005 * 5406 4545 * * 3648 3692 5544 3703 4559 * * 4629 * 4630 2301 1907 * 4201 51 0 * * * * * * 4539 0 0 E 52 5814 * * 756 * 2079 5122 * * * * 5286 * 4235 * * * * * 4447 52 0 * * * * * * 4539 0 0 E 53 * * * 607 * * 5122 * * * * * * 1930 * 4855 * * 5814 * 53 0 * * * * * * 4539 0 0 F 54 * * * * 1614 * 4804 5317 * 2021 3648 * * * * * * 4855 * 1991 54 31 5572 * 3807 107 * * 4539 1000 0 F 55 5692 * * 3600 625 * * 5021 * 4261 5317 * * * * 5976 * 3818 5705 4804 55 51 4855 * 4000 93 * * 4539 1000 0 H 56 5286 * 901 3080 * * 1641 * * * * * * * * * * * * * 56 31 5572 * 4087 87 * * 4539 1000 0 L 57 * * * * 2303 * * 3790 * 1218 4855 * * * * * * * * 1940 57 0 * * * * * * 4539 0 0 Q 58 4206 * * 5624 5933 * 5598 3745 * 1894 4342 * * 3039 * * 4040 2481 3697 4135 58 0 * * * * * * 4539 0 0 H 59 6137 * * 4819 * 4755 712 5976 5535 * 5350 6103 * 3702 * 3348 * 5598 5572 6680 59 0 * * * * * * 4539 0 0 Y 60 3333 498 * 4286 * * 4129 * * * * * * * 5663 * * 5705 * 4470 60 0 * * * * * * 4539 0 0 L 61 3205 * * * 5511 * * 2206 * 2467 * * * 3939 3857 5699 * 1650 * * 61 0 * * * * * * 4434 0 0 D 62 * * 355 * * * * * * * * 3879 * 4700 4573 * 3844 * * * 62 0 * * * * * * 4434 0 0 T 63 4705 * 3014 4904 * 4649 1298 * 2810 * * 5504 * 4326 4620 5827 5099 4158 * * 63 0 * * * * * * 4434 0 0 A 64 5099 119 * * * * * * * * * 5347 * 5290 * * * * * * 64 0 * * * * * * 4434 0 0 T 65 1644 * * * * * * 5246 * 5625 5860 * * * * 5361 3817 941 * * 65 0 * * * * * * 4408 0 0 A 66 669 * 3683 * * * * * * * 3465 * * * * 2924 4421 5361 * * 66 0 * * * * * * 4408 0 0 P 67 5986 * 5344 5623 * * 3019 * 2352 * * * 738 5621 * * * * * * 67 0 * * * * * * 4318 0 0 R 68 * * 3174 4319 * * * * 978 * * * * 3420 3661 4299 3209 * * * 68 0 * * * * * * 4318 0 0 L 69 3652 * * * * * * 2905 * 527 6027 * * * * * * 3690 * * 69 0 * * * * * * 4318 0 0 F 70 * * * * 315 * * 5239 * 4891 5353 * * * * * * * 3162 * 70 0 * * * * * * 4318 0 0 D 71 2580 * 3284 5943 * * 4122 * 1979 * * 3746 4102 * 4007 2714 4966 * * 5412 71 0 * * * * * * 4318 0 0 K 72 4310 * * 4105 * * 3301 * 1424 5239 * 4934 * 5621 4633 4904 3223 3822 * 3533 72 0 * * * * * * 4318 0 0 L 73 * 5239 * * * * * * * 101 5408 * * * * * * 5812 * * 73 0 * * * * * * 4318 0 0 K 74 * * * * * * * * 68 * * * * * 4440 * * * * * 74 0 * * 0 * * * 4271 0 0 //