HHsearch 1.5 NAME d2rbia_ FAM FILE d2rbia_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2rbia_.a3m DATE Wed Mar 10 02:36:17 2010 LENG 108 match states, 108 columns in multiple alignment FILT 103 out of 109 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.6 EVD 0.4402 1.3295 SEQ >ss_dssp CCCSHHHHHHHHHHHSSCCTTEECHHHHHHTTCCGGGTCHHHHSTTCEEEEEEECCCSCCSCCCTTCCEEEEECSCCSSSCCSCEEEEETTCCEEEESST TSCEEECC >sa_dssp EDCDBECAADCADEDEDBBEBBBCDEDADEDDBDDEEBBABECBEEDAABBCECEBEEDDADEDEECEBDBAAADBEDCECCCCBAABBDDCCACCAEDE CDECDDCD >ss_pred CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEECCC CCCEEECC >ss_conf 9544799999999958887422388999961868766898780886104751206787756636896689997168898878746898399838993642 20213319 >Consensus xxxxxxxvxxylxxxxxLPxxyiTKxeAxxlGWxxxxgxlxxxxpgkxIGGdxFxNxExxLPxxxxxxyxExdVxxxgxxRgaxRIVxxxdgxxYyTxDH YxtFxxix >d2rbia_ VINTFDGVADYLIRYKRLPDNYITKSQASALGWVASKGNLAEVAPGKSIGGDVFSNREGRLPSASGRTWREADINYVSGFRNADRLVYSSDWLIYKTTDN YATFTRIR >UniRef50_D2UBT0(64-129:129) Putative uncharacterized protein n=1 Tax=Xanthomonas albilineans RepID=D2UBT0_XANAL E=1e-08 s/c=0.92 id=37% cov=53% ----------------------------------------------------VFGNNEGRLPKSGNGqTYYEGKARLPQNDQaGTYRLVFlVTDGkkkka ieQRYYSADHYATFCTIQ >UniRef50_A8L3G0(278-349:349) Guanine-specific ribonuclease N1 and T1 n=1 Tax=Frankia sp. EAN1pec RepID=A8L3G0_FRASN E=3e-08 s/c=0.83 id=34% cov=38% --------------------------------------------------------------------YKEYDRDpYDGVQRNDRRFVVGDDDAHYYTDD HYQSWVRFR >UniRef50_C3XHZ2(84-174:177) Predicted protein n=2 Tax=Helicobacter RepID=C3XHZ2_9HELI E=0.0001 s/c=0.53 id=36% cov=26% --------------------------------------------------------------------------------RGAERIVVGhsQDGNvlydy IYYTPNHYNDFIHL- >UniRef50_Q2KZM8(51-156:160) Putative ribonuclease n=1 Tax=Bordetella avium 197N RepID=Q2KZM8_BORA1 E=4e-22 s/c=0.99 id=36% cov=94% -IASLARTVRHIGKLGRLPSVYITSDEAKRLGWSGKSSeSLWgiKLTDQKWIGGDVYRN-----PSLPGNeKWYSADLDVVKGYRSSKRLVYNlRSRQMF ISTDLYAHFVEM- >UniRef50_C4LHW9(51-144:146) Putative uncharacterized protein n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LHW9_CORK4 E=5e-16 s/c=0.91 id=27% cov=79% ---------------NQLPD------QARVVVDDIKSGGPFDY-PQKD--GSHFGNYENALPHKKSNYYREYTVDEDKTDhsRGPARIITGGSTathpdV WYYTSDHYSSFCEMQ >UniRef50_Q46X47(52-110:111) Guanine-specific ribonuclease N1 and T1 n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46X47_RALEJ E=4e-14 s/c=1.34 id=27% cov=55% --------------------------------------------------GTTFNNNEGLLPQQPAGYYTEYVVPTPNVKGvGPQRIVTGKNGEVFYTPD HYKTFTPVK >UniRef50_D1S2P4(76-146:146) Guanine-specific ribonuclease N1 and T1 n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S2P4_9ACTO E=5e-11 s/c=0.97 id=35% cov=64% -------------------------------GWYSWSGGQCNFA------GGRFYNYEGQLP--AGATYYEYDVypRACNASRDAYRIVVNKStGATWFS PDHYANFYRL- >UniRef50_UPI0001979AE9(143-197:199) hypothetical protein HcinC1_11895 n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI0001979AE9 E=2e-10 s/c=1.21 id=38% cov=51% --------------------------------------------------GKIFHNRDSILPQKPEGTYKRFDI---SNRHSAGRFVRDTQtGDVYYTTD HYETFIKI- >UniRef50_C6BJ94(73-153:169) Putative uncharacterized protein n=2 Tax=Ralstonia pickettii RepID=C6BJ94_RALP1 E=6e-11 s/c=0.85 id=34% cov=73% ------DTLNQLYAYGTLPNRYVPEHQAN---WEPG-ANRPVMMQKRSIGGDPWG-PTGLL---------QADIDDGLSKRGPLRLIYAQDGKpQYVTT- --------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * V 1 * * * * * * * 1396 * * * * * * * * * 689 * * 1 0 * * * * * * 2101 0 0 I 2 * * * * * * * 1199 * 1488 * * * * * * 3034 * * 3544 2 0 * * * * * * 2472 0 0 N 3 3187 * * 3506 * * * * * * * 2593 * * * 4424 762 * * * 3 0 * * * * * * 2666 0 0 T 4 * * 2285 4541 * 4494 * * * * * * * 2966 * 1175 2870 * * * 4 0 * * * * * * 2757 0 0 F 5 3641 * * * 1844 * 3722 * 1933 2709 * * * 3393 * * * 4172 * * 5 0 * * * * * * 2757 0 0 D 6 3615 * 1844 2260 * * * * * * * 2065 * 2381 * * * * * * 6 0 * * * * * * 2881 0 0 G 7 * * 1837 2027 * 2957 3459 * 4315 * * 5294 4666 5535 3079 * * * * * 7 0 * * * * * * 3101 0 0 V 8 * * * * * * * 5162 * 4815 * * * * * * 3193 274 * * 8 0 * * * * * * 3112 0 0 A 9 1181 * * * * * * 4245 5121 3528 5210 * * * * 4306 5539 1777 * * 9 0 * * * * * * 3170 0 0 D 10 2195 * 1962 4194 * * * * 3623 5442 * 2656 * 4122 4158 3410 * * * * 10 0 * * * * * * 3170 0 0 Y 11 * * * * * * 3640 * * * * * * 4296 * 2884 * * * 447 11 0 * * * * * * 3170 0 0 L 12 * * * * * * * 1294 * 1039 * * * * * * * 4245 4245 * 12 0 * * * * * * 3170 0 0 I 13 * 4364 5010 5550 * 3446 2934 3718 2317 * 4245 * * 3113 3165 * * 5244 * 3418 13 0 * * * * * * 3170 0 0 R 14 2633 * 4364 2471 * * * 5051 2576 * * 3867 * 2443 3324 5310 4856 * * * 14 0 * * * * * * 3170 0 0 Y 15 * * 4952 * 3401 * 3159 * * 4196 * 2038 * * * 4941 3500 * * 1547 15 77 4267 * 0 * * * 3192 1000 0 K 16 3826 * * * * 1124 3272 * 3170 * * 2912 * 4205 4217 6030 * * * * 16 0 * * * * * * 3317 0 0 R 17 5393 * 4330 4740 * * 3580 5314 2071 * * 5191 * 2544 2051 * 3561 * * 5851 17 0 * * * * * * 3317 0 0 L 18 * * * * * * * * * 0 * * * * * * * * * * 18 0 * * * * * * 3422 0 0 P 19 * * * * * * * * * * * * 0 * * * * * * * 19 0 * * * * * * 3422 0 0 D 20 * * 1451 3329 * 4275 * * 4588 5345 * 3964 3299 5573 3938 2601 * * * * 20 78 * 4241 * * * * 3422 0 0 N 21 * * * 4354 4306 * * 5910 4171 * * 969 * 4974 3890 * * 4393 * 2552 21 0 * * * * * 0 3283 0 1000 Y 22 * * * * 1797 * * * * * * * * * * * * * * 490 22 0 * * * * * 0 3283 0 1000 I 23 * * * * * * * 565 * 4008 4354 * * * * * * 2231 * * 23 0 * * * * * 0 3283 0 1000 T 24 * * * * * * * * * * * * 4471 * 5599 4401 226 4974 * * 24 0 * * * * * 0 3283 0 1000 K 25 * * * 4471 * * * * 220 * * * * * 4354 4393 * * * * 25 0 * * * * * 0 3283 0 1000 S 26 2355 * 3374 3918 * 5599 4471 * 2061 * * 3937 * 3905 3546 3437 5239 * * * 26 0 * * * * 0 * 3283 0 1000 Q 27 * * 5480 1019 * * * * 5351 * * 5889 * 1280 * * * 5014 * * 27 0 * * * * * * 3422 0 0 A 28 135 * * * * 4560 * * * 4404 * * * * * * * * * * 28 0 * * * * * * 3422 0 0 S 29 6083 * * 3411 * 5573 * 5478 2060 4780 * 4093 * 3544 1689 4549 * 3752 * * 29 63 * 4552 * * * * 3422 0 0 A 30 1918 * 3352 2990 * * * * 1851 * * 5413 * * 2939 5257 * 4202 * * 30 0 * * * * * 0 3336 0 1000 L 31 3011 * * 5715 * * * * 4825 784 5184 * * 2988 * 4927 * 4202 * * 31 0 * * * * * 0 3336 0 1000 G 32 * * 5718 * * 177 * * * * * * * * * * * 4211 * 4562 32 0 * * * * 0 * 3315 0 1000 W 33 * * 4249 4596 * * * * * * * * * * * * * * 142 * 33 36 * 5341 * * * * 3395 0 0 V 34 * * 2143 4608 * * * 5524 2414 * * 3172 * 3574 5147 2622 4403 4147 * 4878 34 38 * 5272 * * * 0 3377 0 1000 A 35 2379 * * * * 2626 * 4189 4496 * * 5879 1465 * 4421 3716 * * 4490 * 35 102 * 3872 * * 0 * 3377 0 1343 S 36 4091 * 5230 * * 1619 5021 * 2018 * * 4204 * 4875 4182 3988 4522 5271 4811 * 36 218 4204 3537 0 * * 0 3408 1000 1625 K 37 5443 * 4657 4624 * 3675 * * 1211 * * 5929 * 3710 3629 2231 * * * * 37 144 * 3395 * * 0 * 3265 0 2197 G 38 2946 * 3223 * * 797 * * * * * * * * 4535 4511 * 3774 * 5193 38 201 4511 3536 0 * 0 * 3432 1000 1676 N 39 * * 3251 * * 3447 * * * 5090 * 994 3808 * * 2525 5219 * * * 39 71 * 4384 * * 0 * 3322 0 1427 L 40 * * * * 4473 * * * * 376 * * 4217 4813 4601 * * 5287 5147 * 40 66 4473 * 1000 1000 0 * 3351 1000 1000 A 41 3490 2277 3958 4492 4249 3621 5692 * 5501 * * 4710 4629 5761 * 5974 * * 1700 * 41 60 4621 * 1000 1000 * * 3395 1000 0 E 42 * * 2496 2836 * * * * 2502 * * 2154 5661 3333 4839 3522 * 4629 * * 42 0 * * * * * * 3395 0 0 V 43 4843 * * * 3083 * * 5766 * 4621 4629 * * * * 5261 4361 1111 * 2252 43 238 3332 4249 791 1244 * * 3395 1667 0 A 44 1350 5283 * * * * * 5148 * 1934 4526 4470 * * * 5594 3219 3725 * * 44 93 5190 4839 1000 1000 0 * 3362 1000 1000 P 45 5571 * 3304 5910 * 5756 * * 5156 * * 4288 559 3923 5751 * * * * * 45 62 4575 * 2000 415 * 0 3368 1000 1000 G 46 * * * * * 445 * * 2731 * * * * 3124 * * * * * * 46 0 * * * * * 0 3368 0 1000 K 47 5562 * * * * 3263 * * 514 * * * * * 2917 * * 4575 * * 47 0 * * * * * 0 3368 0 1000 S 48 2511 4469 3759 * * * * * * * 3508 * * 2898 * 1327 * 4561 4558 * 48 111 * 3759 * * * 0 3368 0 1000 I 49 * * * * * * * 194 * 3357 5161 * * * * * * * * * 49 0 * * * * * 0 3283 0 1735 G 50 * * * * * 70 * * * * 4401 * * * * * * * * * 50 0 * * * * 0 * 3241 0 1735 G 51 * * * * * 38 * * 5271 * * * * * * * * * * * 51 0 * * * * * * 3885 0 0 D 52 4917 * 1080 5312 * 4028 * 4104 4243 * * 6415 * * 6091 3642 3442 3353 * * 52 0 * * * * * * 3885 0 0 V 53 * * * * * * 4223 2649 5188 * * 5625 5287 * 1787 * 3566 1647 * 5622 53 25 5875 * 0 * * * 3898 1000 0 F 54 * * * * 305 * * * * * * * * * * * * * 4599 2742 54 0 * * * * * * 3888 0 0 S 55 4583 * 6448 5297 * 1461 5678 * 4698 * 4795 5659 * 2743 4268 3298 3627 * * 4049 55 26 * 5827 * * * * 3888 0 0 N 56 * * * * * 4649 * * * * * 59 * * * * * * * * 56 39 * 5214 * * 0 * 3864 0 1000 R 57 3858 * 5228 * 3766 * * * * 5075 * 4186 5746 * 1085 4734 5924 * * 2307 57 0 * * * * * 0 3834 0 1000 E 58 * * 3957 409 * * * * * * * 5290 4624 4936 * 5900 3907 * * * 58 60 * 4624 * * * 0 3834 0 1000 G 59 * * * 7094 * 1129 4780 * 2338 * * 5387 * 5987 2372 3865 * * * * 59 0 * * * * * 0 3740 0 1439 R 60 5427 * 4565 * * 6425 4409 2666 4251 2794 * 5684 * 3457 1950 4857 5793 3326 * * 60 0 * * * * 982 1018 3740 0 1439 L 61 * * * * * * * * * 0 * * * * * * * * * * 61 28 * 5709 * * 0 * 3894 0 1000 P 62 * * * * * * * * * * * * 0 * * * * * * * 62 121 4937 4384 1741 513 * 0 3926 1489 1000 S 63 4278 * 2738 3001 * 6992 6171 * 3121 6055 6890 6225 5580 2990 3985 2241 4084 5658 * * 63 150 * 3338 * * 2347 316 3900 0 2350 A 64 2112 6809 * 3509 * 5278 5832 4806 2146 4986 6818 * * 2639 4088 3604 * 5326 * * 64 64 * 4537 * * 2283 332 3807 0 2857 S 65 3222 * 3297 5379 * 3764 * 6263 3142 * * 5272 1790 4920 3532 3385 4763 * * * 65 21 * 6109 * * 930 1073 3733 0 2989 G 66 3501 * * 4396 * 1224 5589 * 4427 7055 * 4170 * 5948 2497 3528 6688 * * 5951 66 19 * 6248 * * 540 1679 3802 0 2434 R 67 5215 * 4208 5860 * 1193 6316 6739 6263 * * 3637 * 6425 1747 * * 4661 * * 67 130 3535 * 877 1135 1497 631 3910 2250 1817 T 68 * * * 6396 5639 * 4609 4546 3554 * * 5338 * 4671 4931 4376 2458 2787 * 1611 68 0 * * * * 832 1190 3919 0 1493 W 69 * * * * 5689 * * * * 6257 * * * * * * * * 1496 706 69 0 * * * * * 0 3950 0 1000 R 70 6914 * * * 4008 * 2840 5141 3441 * * * * 3643 1620 * 4683 * * 2151 70 0 * * * * 0 * 3950 0 1000 E 71 * * * 157 * * * * * * * * * 5797 5714 5245 4648 * * * 71 23 5994 * 0 * * * 3979 1000 0 A 72 1648 3024 * * 3788 5566 * * * * * * * * * * * 5121 3712 1477 72 0 * * * * * * 3979 0 0 D 73 * * 735 * * * 5994 * 5566 * * * * * * * 1614 4817 * * 73 12 6877 * 0 * * * 3979 1000 0 I 74 5566 * * * * * 5422 1693 * 4129 * * 5994 * 5917 * * 844 * * 74 82 4782 5714 558 1641 * * 3979 1778 0 N 75 6034 * 2042 3980 * 4039 * 5458 4526 * * 1860 2817 * 3852 6740 5109 5237 * * 75 47 4959 * 1243 792 * 0 3955 1669 1000 Y 76 4821 * 5716 6232 6248 7034 * 6466 * 4257 * * 3881 * * 4366 1436 4545 * 1648 76 50 4886 * 691 1394 * 0 3955 1732 1000 V 77 * 6240 4062 6186 5046 5716 6604 * 3685 5585 * 4134 1488 4342 3188 4911 4983 3301 * 5946 77 45 5040 * 1000 1000 0 * 3955 1366 1000 S 78 6734 3516 6259 * * 1009 * * 4300 4401 * 3841 * 4685 3385 3464 * * * * 78 234 2740 * 0 * * * 3979 2098 0 G 79 3300 * 6193 6864 * 1279 * * 5527 5587 * 3359 5661 6588 4485 2350 5346 5122 * * 79 92 4016 * 1079 925 * * 3979 2185 0 F 80 * * 2834 * 6190 3863 2455 4648 3358 * 5818 3227 7289 5917 2351 4919 5033 * * 4306 80 233 2745 * 295 2434 * * 3979 2535 0 R 81 * * * * * 6372 4946 * * * * * 4684 4369 302 4124 * * * * 81 49 4914 * 0 * * * 3981 1514 0 N 82 * * 3519 * * 589 * * * * * 3364 6325 6619 4522 3563 * * * * 82 16 6492 * 1000 1000 * * 3991 1000 0 A 83 970 * 5340 4732 * 3236 * * 5648 * * 6716 2909 * * 3588 3731 * * * 83 0 * * * * * * 3991 0 0 D 84 6275 * 2725 3137 * 5728 6005 * 2651 5102 * 6512 * 4121 1508 * 5199 5759 * 4891 84 25 5860 * 2000 415 * * 3991 1000 0 R 85 * * * * * * 4651 * * * * * * * 59 * * * * * 85 0 * * * * * * 3991 0 0 L 86 * * * * 4543 * * 788 * 1692 6480 * * * 6229 * * 4502 * * 86 0 * * * * * * 3991 0 0 V 87 * 5958 * * * * * 2165 * 2548 * * * * * * * 762 * * 87 26 6695 6944 2807 222 * * 3991 1000 0 Y 88 5834 4104 * * 2574 7191 * 5102 6422 7015 * * * * 5725 5316 2000 3269 6002 1797 88 50 4872 * 855 1161 0 * 3987 1568 1000 S 89 4656 * 4174 7037 * 1230 * * * * * 4324 6695 * * 1478 4994 5570 * * 89 82 4175 * 520 1723 * * 3991 2001 0 S 90 4221 * 3908 4001 * 2346 7022 5665 4095 * * 2043 6695 4581 4091 3069 3995 * * * 90 41 5163 * 991 1009 * * 3991 1750 0 D 91 6284 * 906 5353 * 2945 * * 7252 * * 4024 5919 3590 * 3653 5262 6003 * 6577 91 148 3356 * 1463 650 * * 3991 2687 0 W 92 5566 6512 3901 6247 6614 739 * 6990 * * * * 5127 6118 4987 3826 3440 * 5504 6457 92 127 3564 * 2180 360 * * 3991 2341 0 L 93 4781 * 4037 2202 * * * 5918 4205 1902 4651 4377 * 2873 5921 4057 6475 4846 * * 93 181 3083 * 1575 590 * * 3991 2609 0 I 94 4252 4064 * 5102 6889 * 5924 2064 6353 4137 5269 6944 * 5141 2800 * 4536 2918 3171 4923 94 74 4323 * 1036 965 * * 3991 1705 0 Y 95 * * * * 2919 * * * * * 6314 * * * * * * * 3327 404 95 0 * * * * * * 3991 0 0 K 96 * * * * 4954 7039 * 4619 4348 3345 * * * * * 6087 * 2941 5131 741 96 0 * * * * * * 3991 0 0 T 97 * * * * * * * * * * * * * * * 2645 251 * * * 97 0 * * * * * * 3991 0 0 T 98 2907 * 2894 4112 * 3322 6148 * 4752 4554 * 5297 3691 5768 5880 3169 2524 5039 6460 6005 98 0 * * * * * * 3991 0 0 D 99 * * 142 * * * * * * * * 3915 * * * 5953 6458 * * * 99 0 * * * * * * 3962 0 0 N 100 * * * * * * 65 * * 5072 * 6139 * * * * * * * * 100 0 * * * * * * 3860 0 0 Y 101 * * * * 6046 * * * * * * * * * * * * * * 22 101 0 * * * * * * 3860 0 0 A 102 2509 * 4119 1834 * 4886 * * 2651 * * 4720 * 3758 3353 4570 4872 7097 * * 102 0 * * * * * * 3860 0 0 T 103 * * 3886 * * * 3829 * * * * 4484 * * * 1390 1199 * * * 103 17 6402 * 2322 322 * * 3860 1000 0 F 104 5428 * * * 77 * * * * * 6413 * * * * * * * 5856 * 104 0 * * * * * * 3808 0 0 T 105 * 2931 * 2895 * * * 3608 4067 5558 * 5141 * 3282 3067 6281 2520 3222 6790 5835 105 0 * * * * * * 3937 0 0 R 106 4369 * * 1873 6244 * 5535 * 2749 6268 * * 5974 4293 1415 * 5204 6250 * * 106 0 * * * * * * 3946 0 0 I 107 * * * * 5437 * * 1142 * 2611 2740 * * * * * * 2249 * * 107 0 * * * * * * 3914 0 0 R 108 * * * 2181 * * * * 2286 * * * * 2353 1401 * * * * * 108 0 * * 0 * * * 3413 0 0 //