HHsearch 1.5 NAME d2joda1 FAM FILE d2joda1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2joda1.a3m DATE Mon Mar 8 19:27:21 2010 LENG 106 match states, 106 columns in multiple alignment FILT 102 out of 106 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.6 EVD 0.4394 -0.3248 SEQ >ss_dssp CCSCCCSGGGCTTHHHHHHHHHHHHHHHCSCTTTSCBCCCEECSSCEECCCBTTCCEEECCSCSSCCCSCCSCCSCEEECBCSSCBCCCSSCCSSCSCSS CSSCCC >sa_dssp EEEEEDEDCEBEEBDEEBEDDADECDEECECEEEDCCBCBCBBEAAAADCBDEDDDCECCBDDEEECEECEDCABDABCDADEECCCEBEDEBEEDBCBD DEEDDE >ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCEEECCCCCCCCEEEECCCCHHCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHCCC CCCCCC >ss_conf 9631066413499999999997403201267777877761114625038888987899416404338675456603898867877717999812430678 765689 >Consensus xxsxxxxdxvxxkeexxClexxxxxxxxxxxxxxxxxCxxxwDxxxCWpxtxxGxxvxxxCPxxxxxfxxxxxxgxaxRxCxxnGWsexxpxyxxaCxxd xxxxex >d2joda1 MGSMAHSDGIFKKEQAMCLEKIQRANELMGFNDSSPGCPGMWDNITCWKPAHVGEMVLVSCPELFRIFNPDQDMGVVSRNCTEDGWSEPFPHYFDACGFD EYESET >UniRef50_UPI000180D274(99-171:588) PREDICTED: similar to glucagon-like peptide 1 receptor n=2 Tax=Ciona intestinalis RepID=UPI000180D274 E=4e-09 s/c=0.86 id=25% cov=68% --------CKYMKYKEQCE---KSLNETLKNFENQTFCPGFFDRQICWPHTPAGQLSTEPCPSYIEW---RNESLVAYRFCEFDG--------------- ------ >UniRef50_Q8SZ11(29-118:288) RE24343p n=1 Tax=Drosophila melanogaster RepID=Q8SZ11_DROME E=1e-07 s/c=0.64 id=27% cov=76% --SVAESGPDFDALRAACETRLNASGQLAGSGGPGAEagthCAGTFDGWLCWPDTAVGTSAYELCPDFITGFDPAR---YAHKECGLDG----------- ---------- >UniRef50_UPI0000E47F12(30-115:586) PREDICTED: similar to corticotropin releasing hormone receptor 2 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E47F12 E=1e-14 s/c=0.94 id=28% cov=76% MESSFGNEGMLRNEQD-CLDSFVNYTfVDDDPPYHGLYCPVEHDLILCWPPTKAGETTYLPCPEE----ADQYQTTMAFRSCTLNG-------------- ------- >UniRef50_Q09460(35-120:546) Calcitonin receptor-like protein 1 n=6 Tax=Caenorhabditis RepID=PDFR1_CAEEL E=5e-10 s/c=0.76 id=24% cov=55% --------------------------PERDPNDTRIWCNATYDTVLCWPPTPANSSVTLQCP----HMKGLDPNKNITKDCHVSGvWS------------ ------- >UniRef50_Q4SLQ6(44-131:530) Chromosome 15 SCAF14556, whole genome shotgun sequence n=2 Tax=Percomorpha RepID=Q4SLQ6_TETNG E=1e-17 s/c=1.03 id=28% cov=77% -SSMVCADDVLTKEEQIGLlfRAKRKCEDIIKVKHRVPdgFCSPEWDGIVCWPEGPPGKLVSTACPEYIYDFDH---KGLAYRRCDLNG----------- ---------- >UniRef50_Q9PUK1(34-127:492) Glucagon receptor n=4 Tax=Tetrapoda RepID=Q9PUK1_9NEOB E=1e-18 s/c=1.00 id=31% cov=84% -----------KKYEMECKEKMLKEPPPSG-----LVCNRTFDNFACWPDAQPNTTINVSCPWYLPWHNKV-QHGLVYKQCGPDGqWLETLngsaPRDPR ECQRDKADME- >UniRef50_A1Z9Q8(25-112:504) CG8422 n=11 Tax=Drosophila RepID=A1Z9Q8_DROME E=4e-17 s/c=1.01 id=26% cov=82% -------DGIGESVELQCLV--QEHIEASTYGNDSGHCLTQFDSILCWPRTARGTLAVLQCMDELQGI-HYDSSKNATRFCHANGTWEKYTNY-DAC--- ------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 560 * * * * * * 1637 * * 1 0 * * * * * * 2083 0 0 G 2 * * * 1895 * 1838 * * * * * * * * * 1148 * * * * 2 0 * * * * * * 2339 0 0 S 3 1694 * * * * * * * * * * * * * * 534 * * * * 3 0 * * * * * * 2942 0 0 M 4 * * * * * * * * * 2777 1677 * * * * 2416 * 1498 * * 4 0 * * * * * * 2942 0 0 A 5 1544 * * * 2416 * * 2777 * * 2615 * * * * * * 2638 * * 5 0 * * * * * * 2942 0 0 H 6 * 3286 3476 3085 * 3147 794 * * * * * * * * * * * * * 6 0 * * * * * * 3623 0 0 S 7 2832 * * * * * * * * 4261 * 3437 1568 * * 1404 * * * * 7 0 * * * * * * 4065 0 0 D 8 * * 1044 1703 * 3625 * * * * * 3877 * * * * * * * 4089 8 0 * * * * * * 4253 0 0 G 9 * 1106 3109 * * 1838 * * * * * * 3731 * * * 3956 * * * 9 93 4004 * 0 * * * 4383 1000 0 I 10 * * 3178 * * * * 1801 4313 * 3386 * * * 4535 4358 4324 1668 * * 10 72 4358 * 2000 415 * * 4956 1000 0 F 11 * * * * 1806 4178 * 1793 * 1628 * * * * * * * * * 4426 11 131 3525 * 2000 415 * * 5086 1522 0 K 12 * * 4716 2660 * * * * 2795 * 4595 * * 2913 2294 * 3166 * 3622 3492 12 43 5101 * 1585 585 * * 5460 1000 0 K 13 3610 * 5592 2074 * * * 4708 1531 * * 4403 * 5266 3499 4490 4722 4994 * * 13 0 * * * * * * 5576 0 0 E 14 4122 * 3726 1057 * * * * 5250 5121 * * * 5373 3071 * * 3859 4174 3971 14 0 * * * * * * 5425 0 0 Q 15 5178 * * 1397 * 5220 5535 * 2956 5050 * * * 2294 3572 4957 * * * 3942 15 0 * * * * * * 5436 0 0 A 16 2601 * 2931 2617 5446 * 5789 5265 5752 4346 5413 5355 * 2671 4601 4631 3786 * * 4401 16 82 5588 4860 3170 170 * * 5498 1000 0 M 17 3099 4515 * 1710 * * * 3825 2646 5827 5653 * * 2739 3419 * 5446 * * * 17 0 * * * * 0 * 5527 0 1000 C 18 4560 170 * * * 4867 * * * * * * * * * * * 4867 * * 18 32 * 5499 * * * * 5587 0 0 L 19 5581 5015 5383 3240 4609 * * 4423 4569 994 5463 * * 3453 5560 * * * * 4281 19 85 4884 5425 1000 1000 0 * 5555 1000 1000 E 20 2813 * 4143 1349 * * * * 5448 * * * * 2691 3837 4809 5676 3243 * * 20 49 * 4907 * * * 0 5572 0 1000 K 21 2681 * 4385 4772 * 4398 5454 * 2736 2544 * 5733 * 5588 2473 2977 5573 * * * 21 48 5688 6258 2322 322 * 0 5519 1000 1627 I 22 3731 * * * 5137 * * 2449 3362 2410 2433 4063 * 4267 5515 3947 * 5591 * 5424 22 28 * 5683 * * 488 1801 5508 0 1898 Q 23 3422 * 5414 2544 * * 5205 * 3413 4745 5707 3065 * 2877 2464 4679 * 4096 * * 23 99 * 3916 * * * 0 5589 0 1515 R 24 3522 3813 * 3375 * 4371 * * 2822 3209 * 4431 * 4561 2701 2824 3969 * * * 24 29 * 5671 * * 1963 428 5575 0 2431 A 25 3201 3716 4648 2467 5366 * 3655 5900 * 3102 * 5262 * 3867 5593 2865 5497 4851 * 4377 25 68 5272 5617 1000 1000 * 0 5571 1000 2227 N 26 4393 5366 3518 4165 * 5637 * 4162 5255 * * 2456 2217 4067 5253 3196 3843 5580 * * 26 44 5060 * 0 * 1255 784 5563 1000 2501 E 27 4860 5165 5214 2221 * * * 5376 * 4436 * 5279 2146 3069 5761 3223 3904 5174 * 4832 27 148 5467 3737 0 * * 0 5748 1000 2049 L 28 4802 * 3151 4210 5446 5635 * 3719 4497 2054 4778 * 4010 * * 2773 3497 5067 * 5047 28 143 * 3405 * * * 0 5707 0 3092 M 29 3482 * 4864 4192 * 4259 * 3879 * 2445 4015 * 5267 3755 5275 2236 5098 4234 * 4828 29 111 * 3754 * * 1512 623 5652 0 3582 G 30 4227 * 3248 5214 * 2124 * 5577 2831 4404 4598 3155 * 3649 4717 5401 3620 * * * 30 182 5129 3475 1000 1000 1403 685 5633 1000 3489 F 31 5436 * 5448 3814 4077 5179 * 3675 5221 3724 5104 4444 2809 5457 5504 2545 4668 5022 5427 3506 31 38 * 5256 * * 3157 172 5615 0 3353 N 32 * * 3380 2422 5380 2519 * * 4936 * * 2200 2969 * 5519 4003 5053 * * 5246 32 137 * 3468 * * 2214 350 5601 0 3341 D 33 4243 * 2039 3070 * 3332 4257 5003 5372 6131 * 2798 5440 5171 * 4310 4184 * * 3978 33 36 * 5343 * * 1856 467 5548 0 3654 S 34 4030 * 3563 * * 3014 4956 4751 5496 5492 * 3276 3874 3365 4880 2212 3348 * * * 34 75 * 4299 * * * 0 5609 0 3504 S 35 4235 * 6164 3483 * 2845 4482 * 3752 4183 5463 3682 6247 3783 5368 2508 4216 3473 * * 35 32 5506 * 1000 1000 1282 764 5522 1000 3715 P 36 3782 * 5383 5462 4592 4645 * 5244 4481 2065 * 6113 1970 4333 3533 * 3951 5730 * * 36 69 5068 5911 1000 1000 514 1738 5117 1000 3123 G 37 4064 * * 3774 3905 1455 4088 * * * 4965 * * 5545 4370 4265 * 4527 4856 2784 37 109 3779 * 1948 433 541 1678 4205 2509 2006 C 38 * 0 * * * * * * * * * * * * * * * * * * 38 0 * * * * 0 * 4342 0 1000 P 39 5044 * * 4435 6573 4648 6512 5930 5992 4346 6061 1951 1592 6802 4271 3749 4634 * * * 39 0 * * * * * * 4350 0 0 G 40 2996 * * 5738 6768 2775 * 5706 5831 5937 * * 2473 5591 2359 4085 3296 4093 4952 * 40 0 * * * * * * 4350 0 0 M 41 3868 * 5015 2672 5841 * 5792 4014 * 5705 4136 5685 * 5764 4701 3404 1703 4022 * 5025 41 0 * * * * * * 4350 0 0 W 42 * * * * 1693 * 4815 6508 * 6543 * 5792 * * * 6691 * 6617 800 5542 42 0 * * * * * * 4350 0 0 D 43 * * 45 5024 * * * * * * * * * * * * * * * * 43 10 * 7149 * * * * 4350 0 0 N 44 4623 * 4380 4923 * 1233 6437 * 4060 5252 5655 3049 * 5710 5030 3507 3869 6878 * * 44 0 * * * * 0 * 4354 0 1000 I 45 6158 * * * 4766 * * 1971 6409 2560 6437 * * 5553 * 4959 * 2547 2367 3592 45 47 4971 * 0 * * * 4350 1407 0 T 46 3251 * * * * * * 3398 * 1822 5901 4118 * 6700 5236 3177 2162 4610 * 4978 46 0 * * * * * * 4350 0 0 C 47 * 0 * * * * * * * * * * * * * * * * * * 47 0 * * * * * * 4358 0 0 W 48 * * * * 5013 * * * * * * * * * * * * * 94 4965 48 0 * * * * * * 4358 0 0 K 49 4887 * 3147 4873 * * * * 6548 6004 5243 6562 555 5113 5953 5873 * 6244 * * 49 0 * * * * * * 4358 0 0 P 50 3285 * 2603 4523 * 5030 4553 * 5320 6448 * 6499 2469 5717 2771 2671 5188 * * 4719 50 0 * * * * * * 4358 0 0 A 51 1750 * * * * 4160 * 4830 * * 5934 * * 5679 * 2937 1207 6384 * * 51 0 * * * * * * 4358 0 0 H 52 2517 * 5830 3722 6317 5689 4969 * 3751 3987 * 5852 1692 4908 5100 3476 4940 5711 * * 52 0 * * * * * * 4358 0 0 V 53 1292 * * * * 3734 * 4803 * 5620 * * 2380 * 5183 3763 * 2582 * * 53 0 * * * * * * 4361 0 0 G 54 6038 * * 5289 * 279 * * * * * 3400 * * * 4640 * * * * 54 74 * 4318 * * * * 4361 0 0 E 55 4009 * 5082 2335 * * 5095 6645 3906 5509 * 5550 * 3180 5026 3357 1905 4509 * 6459 55 33 * 5479 * * 0 * 4334 0 2149 M 56 * * * 5454 5879 * * 4106 5457 2068 4158 5792 * 4784 4933 4332 2342 2115 5649 * 56 0 * * * * 0 * 4350 0 1488 V 57 1846 * * 5470 * * 5933 4951 * 4931 5555 * * * * 3676 4770 1054 * * 57 0 * * * * * * 4361 0 0 L 58 4705 * * 3105 5383 * 4398 5921 4601 5283 6315 3537 * 4907 3646 2817 3121 3293 6516 3198 58 0 * * * * * * 4361 0 0 V 59 4108 * * 5831 * 6566 * 3602 3838 2194 4509 4755 * 2907 3243 * 6622 2231 * * 59 0 * * * * * * 4361 0 0 S 60 3786 * 5555 6603 5882 * 5505 * 6889 4250 5590 4482 1287 4021 5303 2591 * 4813 6762 5447 60 0 * * * * * * 4361 0 0 C 61 * 0 * * * * * * * * * * * * * * * * * * 61 0 * * * * * * 4361 0 0 P 62 5168 * * * 4132 * * * * * 5777 * 185 * * 5852 * * * * 62 13 * 6802 * * * * 4515 0 0 E 63 3592 * 2627 2428 4391 4557 6050 * 3748 4540 * 4147 4580 6688 4830 2773 * 6549 4420 * 63 40 * 5208 * * * 0 5207 0 1000 L 64 5663 * * 3359 2294 5613 * 4475 6069 3443 * 5992 * * * 4196 5343 4631 6308 1479 64 23 * 5990 * * 1532 612 5445 0 1784 F 65 5443 * * * 1454 * 6113 2998 * 1956 5207 * 4873 * 6269 * * 3236 * 4858 65 147 4568 4199 2000 415 * 0 5234 1458 1826 R 66 5497 * * 3264 4804 6404 4224 * 4179 4900 * 3609 2300 3675 5000 3295 6498 5336 * 2721 66 0 * * * * 2518 277 5175 0 2921 I 67 * * 2827 5344 3484 1486 3392 4046 * 6107 4692 4910 * * 5912 5377 * * 3250 * 67 50 * 4872 * * 2223 348 5201 0 2713 F 68 6175 4434 * * 967 5344 5227 3300 * 3668 5018 5371 * * * * * 3509 6214 4632 68 99 * 3917 * * 1229 802 5184 0 2784 N 69 5943 * 2244 4184 5546 5444 5986 * 3088 4658 * 2756 * 5563 5095 2243 3464 * * * 69 226 * 2788 * * 899 1109 5224 0 3005 P 70 3917 * 5872 4038 * 3132 2730 * 5194 * 5597 4637 3013 4530 6119 2562 4204 * * 3356 70 100 * 3895 * * 1625 565 5154 0 3580 D 71 4963 * 3195 3301 5652 6190 * 3453 5986 5719 * 5339 4183 4473 2751 2948 * 3540 * 3202 71 301 6342 2507 3322 152 670 1429 5180 1000 3359 Q 72 6082 * 2834 2976 * 4815 5021 * 2891 * * 2448 5784 3964 3332 3522 4401 * * 5826 72 154 * 3308 * * 1487 636 5215 0 3408 D 73 5007 4116 3793 5616 * 3232 * 3645 3972 * 6280 5789 4644 3081 * 2662 2483 4549 * * 73 394 3916 2532 3432 140 1580 588 5206 1904 3447 M 74 3753 * 5046 4888 6092 * 3609 6293 3097 4933 4850 3020 4919 4610 4294 2893 2647 * * 5281 74 133 4940 4169 3536 130 1114 894 5146 1359 3721 G 75 4828 * 5678 3813 5011 1045 4120 5986 4767 5721 * 5656 6338 * 2923 * 5799 * * 4393 75 0 * * * * 717 1352 5142 0 3318 V 76 5034 * * * 2326 * 4851 * 6146 2676 4559 1814 * * 5429 4404 5907 3948 4875 4268 76 0 * * * * 0 * 5271 0 2245 V 77 1325 * * * * * * 3491 * 3680 * * * * * 3784 5939 1535 * * 77 0 * * * * * * 5280 0 0 S 78 * * * * 3404 5989 3754 5434 5217 6157 6536 6543 * 4004 6508 1860 2542 6286 * 2344 78 0 * * * * * * 5275 0 0 R 79 * * * * * * * * 1894 * * * * * 452 * * * * * 79 0 * * * * * * 5275 0 0 N 80 6478 * 4121 3388 3948 * 4922 4675 4714 5758 * 2314 * 3872 4061 4660 3140 4476 4299 3958 80 0 * * * * * * 5250 0 0 C 81 * 0 * * * * * * * * * * * * * * * * * * 81 0 * * * * * * 5250 0 0 T 82 * * 3358 4765 4693 3690 3635 * * 3420 5554 3431 * 6233 5459 5758 1464 * * 4488 82 0 * * * * * * 5250 0 0 E 83 3022 * 6183 1539 6146 5379 * 5181 5078 3867 6553 * 3742 4056 6481 2867 5400 4731 * * 83 0 * * * * * * 5250 0 0 D 84 4192 * 1977 4004 6193 * 5195 * 5626 * 5348 1273 * 5392 * 3834 5788 5844 * * 84 0 * * * * * * 5250 0 0 G 85 5364 * * * * 35 * * * * * * * * * * * * * * 85 688 1398 * 528 1706 * * 5250 3964 0 W 86 * * * 5151 * * * * * * * * * * * 5293 3718 * 200 * 86 0 * * * * * * 4655 0 0 S 87 3191 * * * * * * * * 3964 * 5398 * 4514 * 910 3551 * 2821 * 87 0 * * * * * * 4541 0 0 E 88 * * 2340 1124 * 4672 5166 * 5138 4635 * 4453 3559 * * * 4289 5252 * * 88 0 * * * * * * 4456 0 0 P 89 4638 * * * * * 3733 4292 4563 3329 3589 * 1634 * * * 2559 3100 * * 89 43 5103 * 0 * * * 4266 1000 0 F 90 * * * 4748 1759 * * * * 4082 * * * 4292 * 1973 * 4765 4697 2138 90 88 4082 * 2000 415 * * 4055 1000 0 P 91 * * * * * * * 4093 * * * * 488 * * 3641 3573 3955 * * 91 152 3319 * 0 * * * 4055 1557 0 H 92 * * 2118 * * * 2807 * * * * 3450 1621 * 3343 4554 4918 4800 * * 92 0 * * * * * * 3964 0 0 Y 93 * * 3825 * 5080 * * * * * 4150 * 4631 * * * * 4770 * 384 93 213 * 2864 * * * * 3897 0 0 F 94 2651 * * 4683 4929 * 4290 * * 3982 * 4551 2207 4472 * 3252 3790 3644 * 3425 94 0 * * * * 0 * 3584 0 1364 D 95 4859 * 1827 3412 * 4768 * 2664 * 3666 * * * * 3735 4315 * 2703 * 4733 95 0 * * * * * * 3823 0 0 A 96 586 * 3887 3735 * * * * * * * 4733 * * 3415 * 4066 * * * 96 0 * * * * * * 3823 0 0 C 97 * 0 * * * * * * * * * * * * * * * * * * 97 0 * * * * * * 3823 0 0 G 98 4143 * * * 4047 784 * * * * 4297 * * 3254 * 3946 * * 3614 * 98 0 * * * * * * 3482 0 0 F 99 * * * * 1784 * 4208 * * 4115 * * * 4047 3254 3614 4297 3067 * 2468 99 84 4143 * 1585 585 * * 3482 1000 0 D 100 * * 422 * * 4208 * * * * * 4200 * * * 2785 * * * * 100 0 * * * * * * 3482 0 0 E 101 * * 2913 1787 4557 * * * 3203 4133 * 3906 3285 * * * 3444 3206 * * 101 0 * * * * * * 3418 0 0 Y 102 3203 * 3842 * * 4037 * 3544 * * * 1133 3207 * * 3906 * * * 4503 102 0 * * * * * * 3418 0 0 E 103 * * 1307 2301 * * * 4200 * * * 4472 * * * 2936 2618 * * * 103 0 * * * * * * 3418 0 0 S 104 * * 4188 3754 * * * * * * 3103 * * * * 1395 1417 * * * 104 0 * * * * * * 3348 0 0 E 105 * * * 481 * * * * 2360 * * * 3493 * * * * * * * 105 0 * * * * * * 3049 0 0 T 106 * * * * * * * * * * * * * * * 2366 311 * * * 106 0 * * 0 * * * 2136 0 0 //