HHsearch 1.5 NAME d1y0ua_ FAM FILE d1y0ua_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1y0ua_.a3m DATE Tue Mar 9 20:39:04 2010 LENG 89 match states, 89 columns in multiple alignment FILT 15 out of 19 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.9 EVD 0.4045 0.0366 SEQ >ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECTTTCCC >sa_dssp EEEDEDEEDEDDDEEDDDDDEEDCDDABECEDADDABDBBDEEDDCEDACEDCEBDEEDADDBBEBADDADAAEDEEEEBDBCEDADDE >ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHEECCCCCEEEECCCCCCC >ss_conf 95429998521323566999999999953988999999601743289999981898067999999753011032568677876366139 >Consensus xxxxxexwxxxxxxexsxExhkxyxxAlsnpiRRkIlrxLxexkSxxELxxelxlssxqlxfHLkxLexgfxxxxxGxkxxlTdxGxxx >d1y0ua_ GHXSLEEWIKADSLEKADEYHKRYNYAVTNPVRRKILRXLDKGRSEEEIXQTLSLSKKQLDYHLKVLEAGFCIERVGERWVVTDAGKIV >UniRef50_C8S7H9(3-87:97) Arsenical resistance operon repressor, putative n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S7H9_FERPL E=2e-15 s/c=0.98 id=42% cov=96% ----FEEWISAKSTEEAEEYRKRFKMAISNSIRRRILALLNESeKSLEELKKELKIDEKLLKFHLDTLEKASCI-TVGDKISLTDEGRVL >UniRef50_Q974D2(8-67:391) Putative uncharacterized protein ST0720 n=1 Tax=Sulfolobus tokodaii RepID=Q974D2_SULTO E=1e-14 s/c=1.34 id=34% cov=69% --------------------------AISNEVRRKILKSLQVPKSFSELLEELDIESPALAFHLKKLDGLISKNNEG-KYTLTEEGK-- >UniRef50_A0B7B9(36-109:119) Putative uncharacterized protein n=1 Tax=Methanosaeta thermophila PT RepID=A0B7B9_METTP E=8e-14 s/c=1.06 id=39% cov=83% ---------------ESAEDHKFALEVLQLPLRRKMLRFIGlKARSRDEIEREFGLSEEQARYHLAMLEKGLVVEKVGESYRPTITGRL- >UniRef50_A3DLF3(2-74:433) Regulatory protein, ArsR n=1 Tax=Staphylothermus marinus F1 RepID=A3DLF3_STAMF E=7e-10 s/c=0.89 id=29% cov=58% ----------------SNENIENYLKALAHRVRRDIIRALAEKKhlSYTELMRITGVeDSGTFAFHLKML---------------------- >UniRef50_A1RY91(1-78:280) Putative uncharacterized protein n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RY91_THEPD E=8e-05 s/c=0.62 id=34% cov=87% --------MRGDVSTDALEYEKVY-EILGNPLKRSILRILGERgeASFTELKSSLKTSTGNLYYNLDGME-GFVTKNEKRRYTLTEKG--- >UniRef50_O29984(11-80:87) Uncharacterized protein AF_0255 n=3 Tax=Archaeoglobaceae RepID=Y255_ARCFU E=3e-09 s/c=0.90 id=33% cov=78% -----------------REHHERLFKASMSPIRRQIVAAIGvQGKTREELKKELELSDFQFKFNLDwLIREGFVKEEDG-KLKLTDDG--- >UniRef50_Q12YU5(17-103:115) Putative uncharacterized protein n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=Q12YU5_METBU E=0.0002 s/c=0.54 id=31% cov=55% ---------------------------LQNPTRRKIIEFMKDgPKSLDQIKDKYDLNNMQARLNLDMLEDSFYIAK-------------- >UniRef50_Q8THN4(3-72:501) Predicted protein n=1 Tax=Methanosarcina acetivorans RepID=Q8THN4_METAC E=7e-08 s/c=0.83 id=31% cov=47% ---------------------------LSNPIRATIVKKLyDDSLTFTHLMQLTGCKTGQLSFHLKKLD--------------------- >UniRef50_O28728(35-122:131) Transcriptional regulatory protein, ArsR family n=4 Tax=Euryarchaeota RepID=O28728_ARCFU E=6e-07 s/c=0.63 id=38% cov=51% --------------------------ALQHRVRREIIKFIGYGKrSFEEIAEKFNLSEAQARMHLDLLEEA------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 H 2 * * * * * * 0 * * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 X 3 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 3 * * * * * * * 1000 0 0 S 4 * * * * * * * * * * * * * * * 0 * * * * 4 0 * * * * * * 1000 0 0 L 5 * * * * 983 * * * * 1017 * * * * * * * * * * 5 0 * * * * * * 1455 0 0 E 6 * * * 0 * * * * * * * * * * * * * * * * 6 0 * * * * * * 1732 0 0 E 7 * * * 589 * * * * * * * * * * * 1576 * * * * 7 0 * * * * * * 1732 0 0 W 8 * * * * * * * * * * * * * * * * * * 0 * 8 0 * * * * * * 1732 0 0 I 9 * * * * * * * 1089 * * 1815 * * * * 2025 * * * * 9 0 * * * * * * 2174 0 0 K 10 * * * 2025 * * * * 2163 * * * * * 1815 2019 * * * * 10 407 2025 * 0 * * * 2174 1000 0 A 11 1089 * * * * 1815 * * * * * * * * * 2025 * * * * 11 0 * * * * * * 2174 0 0 D 12 * * 979 2025 * * * * 2019 * * * * * * * * * * * 12 0 * * * * * * 2174 0 0 S 13 * * * * * * * * * * * * * * * 482 * 1815 * * 13 0 * * * * * * 2174 0 0 L 14 * * * * * * * * * 2163 * * * * * 1815 2019 2025 * * 14 0 * * * * * * 2174 0 0 E 15 * * * 482 * * * * * * * * * * * * 1815 * * * 15 0 * * * * * * 2174 0 0 K 16 * * 2166 1248 * * * * 1489 * * * * * * * * * * * 16 0 * * * * * * 2392 0 0 A 17 1029 * * * * * * * * * * * * * * 972 * * * * 17 0 * * * * * * 2641 0 0 D 18 2699 * 3079 2889 * * * * * 2672 * 2675 * * 1840 * * * * * 18 0 * * * * * * 2843 0 0 E 19 * * * 0 * * * * * * * * * * * * * * * * 19 0 * * * * * * 2843 0 0 Y 20 * * 2699 * * * 2681 * * * * 2675 * * * * * * * 906 20 0 * * * * * * 2843 0 0 H 21 * * * 2672 * * 858 2675 * * * * * * 2889 * * * * * 21 0 * * * * * * 2843 0 0 K 22 * * * 1678 * * * * 541 * * * * * * * * * * * 22 0 * * * * * * 2843 0 0 R 23 * * * * 2699 * * * * * * 2675 * * 909 * * 2672 * * 23 0 * * * * * * 2843 0 0 Y 24 2699 * * * 2889 * * * * 2681 * * * * * * * * * 849 24 246 * 2672 * * * * 2843 0 0 N 25 * * * * 2454 * 2810 * 2623 1431 * 2818 * * * * * * * * 25 0 * * * * 0 * 2615 0 1000 Y 26 * * * 1685 * * * 3020 1678 * 2889 * * * * * * * * 3079 26 0 * * * * * * 2843 0 0 A 27 350 * * * * * * 3088 * * * * * * * * * 3354 * * 27 0 * * * * * * 3178 0 0 V 28 * * * * * * * 2621 * 792 * * * * * 3539 * 2523 * * 28 0 * * * * * * 3469 0 0 T 29 3264 * * * * 3397 * * * * 3539 4096 * 2118 * 1452 4043 * * * 29 0 * * * * * * 3469 0 0 N 30 * * * * * * 2128 * * 3682 * 720 * * * 3539 * * * * 30 0 * * * * * * 3469 0 0 P 31 * * * 2641 * * * * 4096 * * * 718 * 3104 4130 * * * * 31 0 * * * * * * 3469 0 0 V 32 * * * * * * * 1584 * 2533 * * * * * * 2243 1824 * * 32 0 * * * * * * 3469 0 0 R 33 * * * * * * * * 3397 * * * * * 144 * * * * * 33 0 * * * * * * 3469 0 0 R 34 3547 * * * * * * * * * * * * * 129 * * * * * 34 0 * * * * * * 3469 0 0 K 35 * 4002 4210 4005 * * * * 1188 * * * * 3539 3111 3397 3547 * * * 35 0 * * * * * * 3469 0 0 I 36 * * * * * * * 117 * * 3682 * * * * * * * * * 36 0 * * * * * * 3469 0 0 L 37 * * * * * * * 1916 * 998 * * * * * * * 2095 * * 37 0 * * * * * * 3469 0 0 R 38 2804 * * 3471 * * * * 1721 * * 4190 * 4094 1515 * * * * * 38 0 * * * * * * 3469 0 0 X 39 2753 * * * 2024 * * 3321 3464 2469 4084 * * * * 3181 * 3937 * * 39 0 * * * * * * 3417 0 0 L 40 * * * * * * * 1812 * 678 3471 * * * * * * * * * 40 129 3547 * 0 * * * 3469 1000 0 D 41 4210 * 2773 3254 * 1382 * * 2750 * * 4130 * 4414 * 4094 * * * * 41 258 2608 * 0 * * * 3469 1616 0 K 42 * * 2508 1407 * * * * 2851 * * * * 3539 * * 3141 4414 * 4005 42 218 2834 * 0 * * * 3469 1643 0 G 43 3682 * * * * 1903 * * 3102 * * * 1734 * 3397 2809 * * * * 43 238 2718 * 625 1508 * * 3469 1584 0 R 44 3397 * * 4002 * * * * 815 3547 * * * * 2406 * * * * * 44 284 2484 * 760 1288 * * 3469 1747 0 S 45 * * * * * * * * * * * * * * * 377 2119 * * * 45 0 * * * * * * 3469 0 0 E 46 * * * 4043 1311 * * * * 2763 * * * * 2608 * * * * 2152 46 0 * * * * * * 3469 0 0 E 47 4002 * 2142 1910 * * * * * * * * * * * 2249 2092 * * * 47 0 * * * * * * 3469 0 0 E 48 * * * 279 * * 3547 * * * * * * 3471 * * * * * * 48 0 * * * * * * 3469 0 0 I 49 * * * * * * * 1516 * 620 * * * * * * * * * * 49 0 * * * * * * 3469 0 0 X 50 2974 4084 * 3561 * * * * 1522 3125 1909 * * * * * * * * * 50 0 * * * * * * 3417 0 0 Q 51 * * 3471 1876 * * * * 2804 * * 4094 * 2261 2922 3397 * * * * 51 0 * * * * * * 3469 0 0 T 52 * * * 1007 * * * 4210 2713 3547 * * * * 4190 3397 4043 * * * 52 0 * * * * * * 3469 0 0 L 53 * 4002 * * 2834 * * * * 817 * * * * * * 2840 * * 3471 53 0 * * * * * * 3469 0 0 S 54 * * 2867 3539 * 1161 * * 2718 * * 3095 * * * 4043 * * * * 54 0 * * * * * * 3469 0 0 L 55 * 3547 * * * * * 2622 * 1028 * * * * * * 3397 2586 * * 55 179 3102 * 0 * * * 3469 1265 0 S 56 * * 1825 3298 * * * * 3547 * * 3471 * * * 1183 * * * * 56 0 * * * * * * 3469 0 0 K 57 * * 3539 1967 * * * * 4043 * * 3471 * * * 1614 2470 * * * 57 0 * * * * * * 3469 0 0 K 58 4005 * * 2874 3539 1752 * * 3086 * 3471 * 2685 * * 4190 * * * * 58 0 * * * * * * 3469 0 0 Q 59 3298 * 4096 * * * * * * 4130 * 3397 * 1112 * 4094 2586 * * * 59 0 * * * * * * 3469 0 0 L 60 2118 * * * 1938 * * * * 975 * * * * * * * * * * 60 0 * * * * * * 3469 0 0 D 61 1898 * 4043 4096 * * * * 2804 * * * * * 2118 2794 * * * 3397 61 0 * * * * * * 3469 0 0 Y 62 * * * * 848 * * * * 3471 4005 * * * * * * * * 1776 62 0 * * * * * * 3469 0 0 H 63 * * * * * * 456 * * * * 1883 * * * * * * * * 63 0 * * * * * * 3469 0 0 L 64 * * * * * * * 4320 * 74 * * * * * * * * * * 64 0 * * * * * * 3469 0 0 K 65 3682 * 1356 * * * * * 1285 * * * * * 3047 * * * * * 65 130 3539 * 0 * * * 3469 1000 0 V 66 * * * * * 3397 * 4096 1757 2753 2170 * * * 4002 * 4130 4043 * * 66 0 * * * * * * 3469 0 0 L 67 * * * * * * * 3539 * 288 3397 * * * * * * * * * 67 0 * * * * * * 3469 0 0 E 68 * * 2231 891 * 3859 * * * * * * * 3571 3398 * * * * * 68 203 * 2931 * * * * 3454 0 0 A 69 3286 * 2913 2074 * 2221 * * 2221 * * * * * * * * * 3349 * 69 0 * * * * 0 * 2975 0 1000 G 70 2587 * * * * 948 * * * 2336 * * * * * 3094 * * * * 70 0 * * * * * * 3246 0 0 F 71 * * * * 798 * * 3328 * 3116 * * * * * 3401 * 3118 * * 71 0 * * * * * * 3222 0 0 C 72 * 1838 * * * * * * * * * * * * * 3328 3118 1424 * 2911 72 0 * * * * * * 3222 0 0 I 73 * * * * * * * 1277 1554 * * * * * * * 2928 3116 * * 73 143 * 3401 * * * * 3222 0 0 E 74 2816 * * 1452 * * * * 2818 * * 2038 * * * * * 3221 * * 74 0 * * * * 0 * 3156 0 1000 R 75 * * * 2991 * 3118 * * 2010 * * 2114 * * 2434 * 3401 * * * 75 0 * * * * * * 3222 0 0 V 76 * * 1448 1936 * * * * * * * * * * * * * 1426 * * 76 0 * * * * * * 2920 0 0 G 77 * * * * * 239 * * 2709 * * * * * * * * * * * 77 652 * 1460 * * * * 2920 0 0 E 78 * * 2296 1366 * * * * 2430 * * * * * 2166 * * * * * 78 0 * * * * 0 * 2392 0 1842 R 79 * * * * * * * * 1121 * * * * * 1912 2747 2993 * * * 79 0 * * * * * * 2920 0 0 W 80 * * * * * * * 3182 * 2053 * * * * * * * * 3147 900 80 0 * * * * * * 2920 0 0 V 81 * * * 3164 * * * * 2949 * * * * * 1865 3182 1936 3147 * * 81 0 * * * * * * 2920 0 0 V 82 * * * * * * * * * 438 * * 2747 * * * * 3147 * * 82 0 * * * * * * 2920 0 0 T 83 * * * * * * * * * * * * * * * * 0 * * * 83 0 * * * * * * 2920 0 0 D 84 * * 1065 1936 * * * 2747 3164 * * * * * * * * * * * 84 0 * * * * * * 2920 0 0 A 85 3147 * 1971 1599 * * * * 2709 * * * * * * * 2747 * * * 85 0 * * * * * * 2920 0 0 G 86 * * * * * 0 * * * * * * * * * * * * * * 86 0 * * * * * * 2920 0 0 K 87 * * * 2463 * * * * 1356 * * * * * 1224 * * * * * 87 0 * * * * * * 2337 0 0 I 88 * * * * * * * 2145 * 1844 * * * * * * * 1013 * * 88 0 * * * * * * 2090 0 0 V 89 * * * * * * * * * 1538 * * * * * * * 609 * * 89 0 * * 0 * * * 1732 0 0 //