HHsearch 1.5 NAME d1xyxa_ FAM FILE d1xyxa_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1xyxa_.a3m DATE Mon Mar 8 15:57:47 2010 LENG 112 match states, 112 columns in multiple alignment FILT 4 out of 8 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.8 EVD 0.4208 -0.1940 SEQ >ss_dssp CTTTTSSCEECCCCCCCCCCCSCSHHHHHHHHHGGGSCSCCEECCGGGCCCHHHHHHHHHHHHHHHHTTTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHH HHHHHHHTTCCC >sa_dssp EEEDBEEBDDBEDCEEBEBECEEEEBBECBDECCEDBCEDABBECDEEBEEDEEBBECABEBBBCBCCEDCDEEEDDBEEDADDAADEBACDBACDBBDD CBEEEEDEEEEE >ss_pred CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCHHHCCCCCCEEEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH HHHHHHCCCCCC >ss_conf 9331245787876316310368720456776677637920253320005662002433456588887730246665512578999999999998899864 335553143469 >Consensus xxxxxxxYmlGxamsrxxxHFxxxxExRyyxenxxryPnrVyYRpxxxyvxqdxFVxDCxNitvtexxixptxkgxnxtexdxkvxxkvireMCitqYrx xsxxxxxxxxxx >d1xyxa_ VVGGLGGYMLGSAMSRPMIHFGNDWEDRYYRENMYRYPNQVYYRPVDQYSNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEQMCVTQYQK ESQAYYDGRRSS >UniRef50_Q6GLY6(114-212:235) Major prion protein n=6 Tax=Xenopus RepID=Q6GLY6_XENLA E=9e-31 s/c=1.35 id=33% cov=85% -------YMLGNAVGRMNHHFDNPMESRYYNDYYNQMPDRV-YRPMyrsEEYVSEDRFVTDCYNMSVTEYIIKPSegKNGSDVNQLDTVVKSKIIREMCI TEYRRGS---------- >UniRef50_P27177(141-243:273) Major prion protein homolog n=19 Tax=Sauropsida RepID=PRIO_CHICK E=2e-29 s/c=1.26 id=39% cov=84% -------YAMGRVMSGMNYHFDSPDEYRWWSENSARYPNRVYYRDYSSPVPQDVFVADCFNITVTEYSIGPAAKkntseavaAANQTEVEMenKVVTKVI REMCVQQYRE------------ >UniRef50_P04156(21-253:253) Major prion protein n=533 Tax=Amniota RepID=PRIO_HUMAN E=2e-92 s/c=0.88 id=87% cov=101% VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYER ESQAYYQRGSSM # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * V 1 * * * * * * * * * * * * * * * * * 0 * * 1 0 * * * * * * 1091 0 0 V 2 * * * * * * * * * * * * * * * * * 0 * * 2 0 * * * * * * 1091 0 0 G 3 * * * * * 0 * * * * * * * * * * * * * * 3 0 * * * * * * 1091 0 0 G 4 * * * * * 0 * * * * * * * * * * * * * * 4 0 * * * * * * 1091 0 0 L 5 * * * * * * * * * 0 * * * * * * * * * * 5 0 * * * * * * 1091 0 0 G 6 * * * * * 0 * * * * * * * * * * * * * * 6 0 * * * * * * 1091 0 0 G 7 * * * * * 0 * * * * * * * * * * * * * * 7 0 * * * * * * 1091 0 0 Y 8 * * * * * * * * * * * * * * * * * * * 0 8 0 * * * * * * 1892 0 0 M 9 1816 * * * * * * * * * 482 * * * * * * * * * 9 0 * * * * * * 1892 0 0 L 10 * * * * * * * * * 482 1816 * * * * * * * * * 10 0 * * * * * * 1892 0 0 G 11 * * * * * 0 * * * * * * * * * * * * * * 11 0 * * * * * * 1892 0 0 S 12 * * * * * * * * * * * 1753 * * 1816 1254 * * * * 12 0 * * * * * * 1892 0 0 A 13 482 * * * * * * * * * * * * * * * * 1816 * * 13 0 * * * * * * 1892 0 0 M 14 * * * * * * * * * * 508 * * * * * * 1753 * * 14 0 * * * * * * 1892 0 0 S 15 * * * * * 1753 * * * * * * * * * 508 * * * * 15 0 * * * * * * 1892 0 0 R 16 * * * * * 1816 * * * * * * * * 482 * * * * * 16 0 * * * * * * 1892 0 0 P 17 * * * * * * * * * * 784 * 1254 * * * * * * * 17 0 * * * * * * 1892 0 0 M 18 * * * * * * * 2272 * * 2235 784 * * * * * * * * 18 0 * * * * * * 1892 0 0 I 19 * * * * * * 1753 1254 * * * * * * * * * * * 1816 19 0 * * * * * * 1892 0 0 H 20 * * * * * * 0 * * * * * * * * * * * * * 20 0 * * * * * * 1892 0 0 F 21 * * * * 0 * * * * * * * * * * * * * * * 21 0 * * * * * * 1892 0 0 G 22 * * 784 * * 1254 * * * * * * * * * * * * * * 22 0 * * * * * * 1892 0 0 N 23 * * * * * * * * * * * 974 * * * 1026 * * * * 23 0 * * * * * * 1892 0 0 D 24 * * 1254 * * * * * * * * * 784 * * * * * * * 24 0 * * * * * * 1892 0 0 W 25 * * 1816 * * * * * * * 1753 * * * * * * * 2235 2272 25 0 * * * * * * 1892 0 0 E 26 * * * 0 * * * * * * * * * * * * * * * * 26 0 * * * * * * 1892 0 0 D 27 * * 1254 * * * * * * * * * * * * 1753 * * * 1816 27 0 * * * * * * 1892 0 0 R 28 * * * * * * * * * * * * * * 0 * * * * * 28 0 * * * * * * 1892 0 0 Y 29 * * * * * * * * * * * * * * * * * * 1816 482 29 0 * * * * * * 1892 0 0 Y 30 * * * * * * * * * * * * * * * * * * 1816 482 30 0 * * * * * * 1892 0 0 R 31 * * * * * * * * * * * 1753 * * 1254 1816 * * * * 31 0 * * * * * * 1892 0 0 E 32 * * 1753 508 * * * * * * * * * * * * * * * * 32 0 * * * * * * 1892 0 0 N 33 * * * * * * * * * * * 508 * * * * * * * 1753 33 0 * * * * * * 1892 0 0 M 34 * * * * * * * * * * 1254 * * * * 1816 * * * 1753 34 0 * * * * * * 1892 0 0 Y 35 1816 * * * * * 2272 * * * * 1753 * * * * * * * 2235 35 0 * * * * * * 1892 0 0 R 36 * * * * * * * * * * * * * 1753 508 * * * * * 36 0 * * * * * * 1892 0 0 Y 37 * * * * * * * * * * 1753 * * * * * * * * 508 37 0 * * * * * * 1892 0 0 P 38 * * * * * * * * * * * * 0 * * * * * * * 38 0 * * * * * * 1892 0 0 N 39 * * 1753 * * * * * * * * 508 * * * * * * * * 39 0 * * * * * * 1892 0 0 Q 40 * * * * * * * * * * * * * 1254 784 * * * * * 40 0 * * * * * * 1892 0 0 V 41 * * * * * * * * * * * * * * * * * 0 * * 41 508 * 1753 * * * * 1892 0 0 Y 42 * * * * * * * * * * * * * * * * * * * 0 42 0 * * * * 0 * 1561 0 1000 Y 43 * * * * * * * * * * * * * * * * * * * 0 43 0 * * * * * * 1892 0 0 R 44 * * * * * * * * * * * * * * 0 * * * * * 44 0 * * * * * * 1892 0 0 P 45 * * 1816 * * * * * * * * * 482 * * * * * * * 45 0 * * * * * * 1892 0 0 V 46 * * * * * * * * * * 990 * * * * * * 2235 * 1816 46 508 1753 * 1585 585 * * 1892 1000 0 D 47 * * 1254 1753 * * * * * * * * * * * 1816 * * * * 47 0 * * * * * * 1892 0 0 Q 48 * * * 990 * * * * * * * * * 2235 * 1816 * * * * 48 0 * * * * * * 1892 0 0 Y 49 * * * * * * * * * * * * 1816 * * * * * * 482 49 0 * * * * * * 1892 0 0 S 50 * * * * * * * * * * * * * * * 1254 * 784 * * 50 0 * * * * * * 1892 0 0 N 51 * * * * * * * * * * * 1254 1816 * * 1753 * * * * 51 0 * * * * * * 1892 0 0 Q 52 * * * 1753 * * * * * * * * * 508 * * * * * * 52 0 * * * * * * 1892 0 0 N 53 * * 784 * * * * * * * * 1254 * * * * * * * * 53 0 * * * * * * 1892 0 0 N 54 * * * * * * * * * * * 1254 * * 1753 * * 1816 * * 54 0 * * * * * * 1892 0 0 F 55 * * * * 0 * * * * * * * * * * * * * * * 55 0 * * * * * * 1892 0 0 V 56 * * * * * * * * * * * * * * * * * 0 * * 56 0 * * * * * * 1892 0 0 H 57 1816 * * * * * 1254 * * * * * * * * * 1753 * * * 57 0 * * * * * * 1892 0 0 D 58 * * 0 * * * * * * * * * * * * * * * * * 58 0 * * * * * * 1892 0 0 C 59 * 0 * * * * * * * * * * * * * * * * * * 59 0 * * * * * * 1892 0 0 V 60 * * * * 1816 * * * * * * * * * * * * 1254 * 1753 60 0 * * * * * * 1892 0 0 N 61 * * * * * * * * * * * 0 * * * * * * * * 61 0 * * * * * * 1892 0 0 I 62 * * * * * * * 508 * * 1753 * * * * * * * * * 62 0 * * * * * * 1892 0 0 T 63 * * * * * * * * * * * * * * * 1753 508 * * * 63 0 * * * * * * 1892 0 0 I 64 * * * * * * * 1254 * * * * * * * * * 784 * * 64 0 * * * * * * 1892 0 0 K 65 * * * * * * * * 1254 * * * * * * * 784 * * * 65 0 * * * * * * 1892 0 0 Q 66 * * * 784 * * * * * * * * * 1254 * * * * * * 66 0 * * * * * * 1892 0 0 H 67 * * * * * * 1254 * * * * * * * * * * * * 784 67 0 * * * * * * 1892 0 0 T 68 * * * * * * * 1753 * * * * * * * 1816 1254 * * * 68 0 * * * * * * 1892 0 0 V 69 * * * * * * * 784 * * * * * * * * * 1254 * * 69 0 * * * * * * 1892 0 0 T 70 * * * * * 1816 * * 1753 * * * * * * * 1254 * * * 70 0 * * * * * * 1892 0 0 T 71 * * * * * * * * * * * * 784 * * * 1254 * * * 71 0 * * * * * * 1892 0 0 T 72 1816 * * * * * * * * * * * * * * 1753 1254 * * * 72 508 1753 * 1000 1000 * * 1892 1000 0 T 73 1816 * * * * * * * 1753 * * * * * * * 1254 * * * 73 0 * * * * * * 1892 0 0 K 74 * * * * * * * * 508 * * 1753 * * * * * * * * 74 482 1816 * 3000 193 * * 1892 1000 0 G 75 1816 * * * * 482 * * * * * * * * * * * * * * 75 0 * * * * * * 1892 0 0 E 76 1816 * * 1254 * * * * * * * * * * * 1753 * * * * 76 0 * * * * * * 1892 0 0 N 77 * * 1753 * * * * * * * * 508 * * * * * * * * 77 0 * * * * * * 1892 0 0 F 78 * * * * 1254 * * * * * * * * 1816 * * * 1753 * * 78 0 * * * * * * 1892 0 0 T 79 * * * * * * * * * * * 1753 * * * * 508 * * * 79 0 * * * * * * 1892 0 0 E 80 * * * 508 * * * * * * * * * 1753 * * * * * * 80 0 * * * * * * 1892 0 0 T 81 * * * * * * * * * 1753 * * * * * * 1254 1816 * * 81 0 * * * * * * 1892 0 0 D 82 * * 482 1816 * * * * * * * * * * * * * * * * 82 0 * * * * * * 1892 0 0 V 83 * * * * * * * * * * 1816 * * * * * 1753 1254 * * 83 482 1816 * 1000 1000 * * 1892 1000 0 K 84 * * * * * * * * 508 * * * * * * * * 1753 * * 84 0 * * * * * * 1892 0 0 M 85 * * * * * * * * * * 1254 * * * * * * 784 * * 85 0 * * * * * * 1892 0 0 M 86 * * * * * * * * 1753 * 1254 * * * * * * 1816 * * 86 0 * * * * * * 1892 0 0 E 87 * * * 1254 * * * * * * * * * * * 1753 1816 * * * 87 0 * * * * * * 1892 0 0 R 88 * * * * * * * * 784 * * * * * 1254 * * * * * 88 0 * * * * * * 1892 0 0 V 89 * * * * * * * 1753 * * * * * * * * * 508 * * 89 0 * * * * * * 1892 0 0 V 90 * * * * * * * 784 * * * * * * * * * 1254 * * 90 0 * * * * * * 1892 0 0 E 91 * * * 1254 * * * * * * * * * * 784 * * * * * 91 0 * * * * * * 1892 0 0 Q 92 * * * 784 * * * * * * * * * 1254 * * * * * * 92 0 * * * * * * 1892 0 0 M 93 * * * * * * * * * * 0 * * * * * * * * * 93 0 * * * * * * 1892 0 0 C 94 * 0 * * * * * * * * * * * * * * * * * * 94 0 * * * * * * 1892 0 0 V 95 * * * * * * * 990 * * * * * * * * * 1010 * * 95 0 * * * * * * 1892 0 0 T 96 * * * * * * * * * * * * * 1816 * * 482 * * * 96 0 * * * * * * 1892 0 0 Q 97 * * * 1753 * * * * * * * * * 508 * * * * * * 97 0 * * * * * * 1892 0 0 Y 98 * * * * * * * * * * * * * * * * * * * 0 98 0 * * * * * * 1892 0 0 Q 99 * * * 2272 * * * * * * * * * 2235 784 * * * * * 99 0 * * * * * * 1892 0 0 K 100 * * * 1816 * * * * 2235 * * * * * 990 * * * * * 100 0 * * * * * * 1892 0 0 E 101 * * * 791 * 1245 * * * * * * * * * * * * * * 101 0 * * * * * * 1602 0 0 S 102 * * * * * * * * * * * * * * * 0 * * * * 102 0 * * * * * * 1602 0 0 Q 103 * * * * * * * * * * * * * 0 * * * * * * 103 0 * * * * * * 1091 0 0 A 104 0 * * * * * * * * * * * * * * * * * * * 104 0 * * * * * * 1091 0 0 Y 105 * * * * * * * * * * * * * * * * * * * 0 105 0 * * * * * * 1091 0 0 Y 106 * * * * * * * * * * * * * * * * * * * 0 106 0 * * * * * * 1091 0 0 D 107 * * 1000 * * * * * * * * * * 1000 * * * * * * 107 0 * * * * * * 1091 0 0 G 108 * * * * * 1000 * * * * * * * * 1000 * * * * * 108 0 * * * * * * 1091 0 0 R 109 * * * * * 1000 * * * * * * * * 1000 * * * * * 109 0 * * * * * * 1091 0 0 R 110 * * * * * * * * * * * * * * 1000 1000 * * * * 110 0 * * * * * * 1091 0 0 S 111 * * * * * * * * * * * * * * * 0 * * * * 111 0 * * * * * * 1091 0 0 S 112 * * * * * * * * * * 1000 * * * * 1000 * * * * 112 0 * * 0 * * * 1091 0 0 //