HHsearch 1.5 NAME d1wyka_ FAM FILE d1wyka_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1wyka_.a3m DATE Thu Mar 11 17:16:29 2010 LENG 152 match states, 152 columns in multiple alignment FILT 6 out of 10 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.9 EVD 0.3952 -0.9615 SEQ >ss_dssp CCEEEEECTTCCEEEEEEEETTEEEEETTCCSEESSTTGGGSCCEEEGGGTEEEEECCTTTTTTSBCBCSCCCSEEEEETTEEEEEETTEEEEETTTCCT TCTTCEEECTTSCEEEEEEEEEEETTEEEEEEEEECTTCCEEEECCTTCEEC >sa_dssp EECBDACDEEDDDCAAAAABDCDABBABCBEDEBDCEDACECECDECEECBBBDBEACEEBDEDCBDBBCECEEDEBDBEDDDACCDEDDBAADEEDCCE BBAACBACBEECDAAAAABABBECEECBABAAABCCEEEECDDDDCEECDEB >ss_pred CCEEEEECCCCCEEEEEEEECCEEECEEEEEEEECCHHHHHEEEEEEEEEECCHHHHCHHHHHHHCCCCCCCCCEEECCEEEEEEEECCEEEEECCCCCC CCCCCCEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEECCCCCCCC >ss_conf 9036244057744336999746450001322443583231023310000101065503454343102411275436403010169705047862124688 8788721427983999997278877751689998857883898520145249 >Consensus xxxfxxxxeDGxixGyAxxxgxkvxkPxHVkGxidhpxLaxlkfxkssxyDlExAxxPxxMrxdafxytxexpegxYnwhhGavQxxxgrftipxgxgxx GDSGRPixDNsGrVVaIVLGGxnegxrTaLSVvxwnxKxxxxkxtxexxxeW >d1wyka_ MRLFDVKNEDGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFTIPRGVGGR GDSGRPIMDNSGRVVAIVLGGADEGTRTALSVVTWNSKGKTIKTTPEGTEEW >UniRef50_Q86925(117-267:1244) E1 envelope glycoprotein n=959 Tax=Alphavirus RepID=POLS_AURAV E=4e-72 s/c=1.79 id=76% cov=100% -RTFVGKNEDGKIMGYAVAMEGKVIKPLHVKGTIDHPALAKLKFTKSSSYDMEFAKLPTEMKSDAFGYTTEHPEVFYNWHHGAVQFSGGRFTIPTGVGGP GDSGRPILDNSGKVVAIVLGGANEVPGTALSVVTWNKKGAAIKTTHEDTVEW >UniRef50_Q80S25(123-270:1241) Structural polyprotein n=153 Tax=Alphavirus RepID=Q80S25_9VIRU E=2e-71 s/c=1.82 id=66% cov=98% --IFEVKL-DGEVTGYACLVGDKVMKPAHVKGVIQNDELAKLSFKKSSKYDLECAQIPVKMRSDASKYTHEKPEGHYNWHHGAVQYTNGRFTIPTGAGKP GDSGRPIFDNKGRVVAIVLGGANEGARTALSVVTWN-KDMVTRVTPEGSVEW >UniRef50_P36329(126-275:1255) E1 envelope glycoprotein n=477 Tax=root RepID=POLS_EEVV3 E=7e-69 s/c=1.74 id=59% cov=99% -KTFPIMLE-GKINGYACVVGGKLFRPMHVEGKIDNDVLAALKTKKASKYDLEYADVPQNMRADTFKYTHEKPQGYYSWHHGAVQYENGRFTVPKGVGAK GDSGRPILDNQGRVVAIVLGGVNEGSRTALSVVMWNEKGVTVKYTPENCEQW >UniRef50_Q8QL52(141-283:1322) E1 envelope glycoprotein n=104 Tax=Alphavirus RepID=POLS_SLDV E=1e-52 s/c=1.44 id=39% cov=94% ---------DGAISGYAVLIGSRVFKPAHVKGKFDHPELADIKFQVAEVMDLEAAAYPKCMRDQA-AEPATMMDGVYNGEYGNIQeWRTILYSMRAAEAS RGDSGRPFTDNSGKVVGIVLGGGPDGRRTRLSVIGFDKKLKAREIAYSEAIPW >UniRef50_Q993S2(1-36:661) Structural polyprotein (Fragment) n=1 Tax=Seal louse virus RepID=Q993S2_9VIRU E=9e-09 s/c=1.70 id=73% cov=24% ---------------------------------------------------------------------------------------------------- ---------------AIVLGGANEGERTALSVVTWN-KNTVVKVTPEETVEW # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1000 0 0 R 2 * * * * * * * * 1468 * * * * * 647 * * * * * 2 0 * * * * * * 1427 0 0 L 3 * * * * * * * 2010 * 2082 * * * * * * 956 * * * 3 0 * * * * * * 1525 0 0 F 4 * * * * 0 * * * * * * * * * * * * * * * 4 0 * * * * * * 1525 0 0 D 5 * * 2082 2010 * * * * * * * * 1892 * * * * 2023 * * 5 0 * * * * * * 1525 0 0 V 6 * * * * * 2023 * 1892 * * * * * * * * * 1046 * * 6 0 * * * * * * 1525 0 0 K 7 * * * * * * * * 453 * 1892 * * * * * * * * * 7 0 * * * * * * 1525 0 0 N 8 * * * * * * * * * 950 * 1052 * * * * * * * * 8 412 * 2010 * * * * 1525 0 0 E 9 * * * 0 * * * * * * * * * * * * * * * * 9 647 * 1468 * * 0 * 1427 0 1000 D 10 * * 0 * * * * * * * * * * * * * * * * * 10 0 * * * * 0 * 1752 0 1000 G 11 * * * * * 0 * * * * * * * * * * * * * * 11 0 * * * * * * 1871 0 0 D 12 1847 * 2562 2470 * * * * 1426 * * * * * * * * * * * 12 0 * * * * * * 1871 0 0 V 13 * * * * * * * 621 * * * * * * * * * 1515 * * 13 0 * * * * * * 1871 0 0 I 14 * * * * * * * 2562 * * 2503 2352 * * * 1847 2470 * * * 14 0 * * * * * * 1871 0 0 G 15 * * * * * 0 * * * * * * * * * * * * * * 15 0 * * * * * * 1871 0 0 H 16 * * * * * * 2562 * * * * * * * * * * * * 268 16 0 * * * * * * 1871 0 0 A 17 0 * * * * * * * * * * * * * * * * * * * 17 0 * * * * * * 1871 0 0 L 18 * 1410 * * * * * * * 2562 * * * * * * * 1138 * * 18 0 * * * * * * 1871 0 0 A 19 1532 * * * * * * * * 1126 * * * * * * * 2352 * * 19 0 * * * * * * 1871 0 0 M 20 * * * * * * * 1847 * * 1532 * * * * * * 1410 * * 20 0 * * * * * * 1871 0 0 E 21 * * * 1532 * 612 * * * * * * * * * * * * * * 21 0 * * * * * * 1871 0 0 G 22 * * 2470 * * 885 * * * * * * * * * 1847 * * * * 22 0 * * * * * * 1871 0 0 K 23 * * * * * * * * 470 * * * * * 1847 * * * * * 23 0 * * * * * * 1871 0 0 V 24 * * * * * * * * * 2352 * * * * * * * 315 * * 24 0 * * * * * * 1871 0 0 M 25 * * * * 1078 * * 2503 * * 1515 * * * * * * * * * 25 0 * * * * * * 1871 0 0 K 26 * * * * * * * * 315 * * * * * 2352 * * * * * 26 0 * * * * * * 1871 0 0 P 27 * * * * * * * * * * * * 0 * * * * * * * 27 0 * * * * * * 1871 0 0 L 28 1126 * * * * * * * * 1532 2352 * * * * * * * * * 28 0 * * * * * * 1871 0 0 H 29 * * * * * * 0 * * * * * * * * * * * * * 29 0 * * * * * * 1871 0 0 V 30 * * * * * * * * * * * * * * * * * 0 * * 30 0 * * * * * * 1871 0 0 K 31 * * * 2352 * * * * 315 * * * * * * * * * * * 31 0 * * * * * * 1871 0 0 G 32 * * * * * 0 * * * * * * * * * * * * * * 32 0 * * * * * * 1871 0 0 T 33 * * * * * * * * 1078 * * * * * * * 1532 2470 * * 33 0 * * * * * * 1871 0 0 I 34 * * * * 1847 * * 470 * * * * * * * * * * * * 34 0 * * * * * * 1871 0 0 D 35 * * 287 * * * * * * * * * * 2470 * * * * * * 35 0 * * * * * * 1871 0 0 H 36 * * * * * * 681 * * * * 1410 * * * * * * * * 36 0 * * * * * * 1871 0 0 P 37 * * 1410 * * * * * * * * * 681 * * * * * * * 37 0 * * * * * * 1871 0 0 V 38 2503 * * 1126 * * * * * * * * * * * * * 1453 * * 38 0 * * * * * * 1871 0 0 L 39 * * * * * * * * * 0 * * * * * * * * * * 39 0 * * * * * * 1871 0 0 S 40 268 * * * * * * * * * * * * * * 2562 * * * * 40 0 * * * * * * 1871 0 0 K 41 2352 * 1847 * * * * * 926 * * * * * * * * * * * 41 0 * * * * * * 1871 0 0 L 42 * * * * * * * 1847 * 470 * * * * * * * * * * 42 0 * * * * * * 1871 0 0 K 43 * * * * * * * * 287 * * * * * * 2470 * * * * 43 0 * * * * * * 1871 0 0 F 44 * * * * 315 * * * * * * * * * * * 2352 * * * 44 0 * * * * * * 1871 0 0 T 45 * * * * * * * * 1410 * * * * 1847 * * 1532 * * * 45 0 * * * * * * 1871 0 0 K 46 * * * * * * * * 470 * * * * * * * * 1847 * * 46 0 * * * * * * 1871 0 0 S 47 1078 * * * * * * * * * * * * * * 926 * * * * 47 0 * * * * * * 1871 0 0 S 48 * * * 1847 * * * * * * * * * * * 470 * * * * 48 0 * * * * * * 1871 0 0 A 49 2562 * * * * * * * 1410 * * * * * * 2503 * 1847 * * 49 0 * * * * * * 1871 0 0 Y 50 * * * * * * * * * * 1847 * * * * * * * * 470 50 0 * * * * * * 1871 0 0 D 51 * * 0 * * * * * * * * * * * * * * * * * 51 0 * * * * * * 1871 0 0 M 52 * * * * * * * * * 612 1532 * * * * * * * * * 52 0 * * * * * * 1871 0 0 E 53 * * * 0 * * * * * * * * * * * * * * * * 53 0 * * * * * * 1871 0 0 F 54 1847 2470 * * 1532 * * * * * * * * * * * * * * 2352 54 0 * * * * * * 1871 0 0 A 55 0 * * * * * * * * * * * * * * * * * * * 55 0 * * * * * * 1871 0 0 Q 56 1847 * 2352 * * * * * 2503 * * * * 1515 * * * * * * 56 0 * * * * * * 1871 0 0 L 57 * * * * * * * 2470 * 1532 * * * * * * * 2352 * 1847 57 0 * * * * * * 1871 0 0 P 58 * * * * * * * * * * * * 0 * * * * * * * 58 0 * * * * * * 1871 0 0 V 59 * * * * * * * * 1847 * * * * 2352 * * 2503 1515 * * 59 0 * * * * * * 1871 0 0 N 60 * 1847 * 2503 * * * * 2470 * * 1453 * * * * * * * * 60 0 * * * * * * 1871 0 0 M 61 * * * * * * * * * * 0 * * * * * * * * * 61 0 * * * * * * 1871 0 0 R 62 * * * * * * * * 2503 * * * * * 280 * * * * * 62 0 * * * * * * 1871 0 0 S 63 2352 * 1847 * * * * * * * * * * * * 926 * * * * 63 0 * * * * * * 1871 0 0 E 64 * * 855 2562 * * * * * * * * * 1847 * * * * * * 64 0 * * * * * * 1871 0 0 A 65 315 * * * * * * * * * * * * * * * 2352 * * * 65 470 * 1847 * * * * 1871 0 0 F 66 * * * * 412 * * * * * * * * * * 2010 * * * * 66 0 * * * * 0 * 1525 0 1000 T 67 1847 * * * * 2503 * * 1410 * * * * * * * 2562 * * * 67 0 * * * * * * 1871 0 0 Y 68 * * * 1847 * * * * * * * * * * * * * * * 470 68 0 * * * * * * 1871 0 0 T 69 * * * * * * * * * * * * 1847 * * * 470 * * * 69 0 * * * * * * 1871 0 0 S 70 1847 * * * * * 1410 * * * * * * * * 2562 2503 * * * 70 0 * * * * * * 1871 0 0 E 71 * * * 470 * * * * * * * * * * * * 1847 * * * 71 0 * * * * * * 1871 0 0 H 72 * * * * * * 1532 * 1410 * 1847 * * * * * * * * * 72 0 * * * * * * 1871 0 0 P 73 * * * * * * * * * * 1847 * 470 * * * * * * * 73 0 * * * * * * 1871 0 0 E 74 * * 1847 926 * * * * * * * * * 2352 * * * * * * 74 0 * * * * * * 1871 0 0 G 75 * * * * * 280 * * * * * * * * * * * 2503 * * 75 0 * * * * * * 1871 0 0 F 76 * * * * 1532 * 2470 * * * * * * * * * * 1847 * 2352 76 0 * * * * * * 1871 0 0 Y 77 * * * * * * * * * * * * * * * * * * * 0 77 0 * * * * * * 1871 0 0 N 78 * * * * * * * * * * * 315 * * * 2352 * * * * 78 0 * * * * * * 1871 0 0 W 79 * * * * * 1847 * * * * * * * * * * * * 470 * 79 0 * * * * * * 1871 0 0 H 80 * * * 1847 * * 470 * * * * * * * * * * * * * 80 0 * * * * * * 1871 0 0 H 81 * * * * * * 470 * * * * * * * * * * * * 1847 81 0 * * * * * * 1871 0 0 G 82 * * * * * 0 * * * * * * * * * * * * * * 82 0 * * * * * * 1871 0 0 A 83 470 * * * * * * * * * * 1847 * * * * * * * * 83 0 * * * * * * 1871 0 0 V 84 * * * * * * * 1847 * * * * * * * * * 470 * * 84 0 * * * * * * 1871 0 0 Q 85 * * * * * * * * * * * * * 0 * * * * * * 85 470 1847 * 0 * * * 1871 1000 0 Y 86 * * * * 2503 * * * * * * * * * * * * * 1847 874 86 0 * * * * * * 1871 0 0 S 87 * * * 2352 * * * * * * * * * * 1847 1532 2470 * * * 87 0 * * * * * * 1871 0 0 G 88 * * * * * 1532 * * * * * 1410 * * * * 1847 * * * 88 0 * * * * * * 1871 0 0 G 89 * * * * * 470 * 1847 * * * * * * * * * * * * 89 0 * * * * * * 1871 0 0 R 90 * * * * * * * * * 1847 * * * * 470 * * * * * 90 0 * * * * * * 1871 0 0 F 91 * * * * 470 * * * * * * * * * * * * * * 1847 91 0 * * * * * * 1871 0 0 T 92 * * * * * * * * * * * * * * * 1847 470 * * * 92 0 * * * * * * 1871 0 0 I 93 * * * * * * * 926 * * 1847 * * * * * * 2352 * * 93 0 * * * * * * 1871 0 0 P 94 * * * * * * * * * * * * 470 * 1847 * * * * * 94 0 * * * * * * 1871 0 0 R 95 1847 * * * * * * * 2352 * * * * * 2562 * 1487 * * * 95 0 * * * * * * 1871 0 0 G 96 1847 * * * * 470 * * * * * * * * * * * * * * 96 0 * * * * * * 1871 0 0 V 97 2470 * * 1847 * * * * * * * * * * * * * 885 * * 97 0 * * * * * * 1871 0 0 G 98 1847 * * * * 470 * * * * * * * * * * * * * * 98 0 * * * * * * 1871 0 0 G 99 2352 * * * * 1532 * * 2470 * * * * * * 1847 * * * * 99 0 * * * * * * 1871 0 0 R 100 * * * * * * * * 2352 * * * 1487 * 1161 * * * * * 100 0 * * * * * * 1871 0 0 G 101 * * * * * 0 * * * * * * * * * * * * * * 101 0 * * * * * * 1871 0 0 D 102 * * 0 * * * * * * * * * * * * * * * * * 102 0 * * * * * * 1871 0 0 S 103 * * * * * * * * * * * * * * * 0 * * * * 103 0 * * * * * * 1871 0 0 G 104 * * * * * 0 * * * * * * * * * * * * * * 104 0 * * * * * * 1871 0 0 R 105 * * * * * * * * * * * * * * 0 * * * * * 105 0 * * * * * * 1871 0 0 P 106 * * * * * * * * * * * * 0 * * * * * * * 106 0 * * * * * * 1871 0 0 I 107 * * * * 1847 * * 470 * * * * * * * * * * * * 107 0 * * * * * * 1871 0 0 M 108 * * * * 2470 * * * * 1426 2562 * * * * * 1847 * * * 108 0 * * * * * * 1871 0 0 D 109 * * 0 * * * * * * * * * * * * * * * * * 109 0 * * * * * * 1871 0 0 N 110 * * * * * * * * * * * 0 * * * * * * * * 110 0 * * * * * * 1871 0 0 S 111 * * * * * * * * 2470 * * * * 2352 * 681 * * * * 111 0 * * * * * * 1871 0 0 G 112 * * * * * 0 * * * * * * * * * * * * * * 112 0 * * * * * * 1871 0 0 R 113 * * * * * * * * 1138 * * * * * 874 * * * * * 113 0 * * * * * * 1871 0 0 V 114 * * * * * * * * * * * * * * * * * 0 * * 114 0 * * * * * * 1871 0 0 V 115 * * * * * * * * * * * * * * * * * 0 * * 115 0 * * * * * * 1871 0 0 A 116 459 * * * * 1874 * * * * * * * * * * * * * * 116 0 * * * * * * 1927 0 0 I 117 * * * * * * * 0 * * * * * * * * * * * * 117 0 * * * * * * 1927 0 0 V 118 * * * * * * * * * * * * * * * * * 0 * * 118 0 * * * * * * 1927 0 0 L 119 * * * * * * * * * 0 * * * * * * * * * * 119 0 * * * * * * 1927 0 0 G 120 * * * * * 0 * * * * * * * * * * * * * * 120 0 * * * * * * 1927 0 0 G 121 * * * * * 0 * * * * * * * * * * * * * * 121 0 * * * * * * 1927 0 0 A 122 829 * * * * 1874 * * * * * * * * * * * 2607 * * 122 0 * * * * * * 1927 0 0 D 123 * * 2871 * * * * * * * * 760 1874 * * * * * * * 123 0 * * * * * * 1927 0 0 E 124 * * 1874 459 * * * * * * * * * * * * * * * * 124 0 * * * * * * 1927 0 0 G 125 * * * * * 249 * * * * * * * * * * * 2658 * * 125 0 * * * * * * 1927 0 0 T 126 2823 * * 2981 * * * * * * * * 2658 * 1874 2607 2871 * * * 126 0 * * * * * * 1927 0 0 R 127 * * * * * 2658 * * * * * * * * 249 * * * * * 127 0 * * * * * * 1927 0 0 T 128 * * * * * * * * * * * * * * * * 0 * * * 128 0 * * * * * * 1927 0 0 A 129 459 * * * * * * * * * * * * * 1874 * * * * * 129 0 * * * * * * 1927 0 0 L 130 * * * * * * * * * 0 * * * * * * * * * * 130 0 * * * * * * 1927 0 0 S 131 * * * * * * * * * * * * * * * 0 * * * * 131 0 * * * * * * 1927 0 0 V 132 * * * * * * * * * * * * * * * * * 0 * * 132 0 * * * * * * 1927 0 0 V 133 * * * * * * * 1874 * * * * * * * * * 459 * * 133 0 * * * * * * 1927 0 0 T 134 * * * * * 1874 * * * * 2607 * * * * * 829 * * * 134 0 * * * * * * 1927 0 0 W 135 * * * * 1874 * * * * * * * * * * * * * 459 * 135 0 * * * * * * 1927 0 0 N 136 * * 1874 * * * * * * * * 459 * * * * * * * * 136 450 * 1900 * * * * 1927 0 0 S 137 * * * 2007 * * * * 902 * * * * * * 2210 * * * * 137 0 * * * * 0 * 1800 0 1144 K 138 * * * * * * * * 0 * * * * * * * * * * * 138 0 * * * * * * 1927 0 0 G 139 * * 2823 * * 1122 * * * 1874 * 2981 * * * * * * * * 139 0 * * * * * * 1927 0 0 K 140 2658 * * * * * * * 1288 * 2823 * * * * * 2981 2607 * * 140 0 * * * * * * 1927 0 0 T 141 1214 * * * * * * * * * * * * * * * 1733 1900 * * 141 0 * * * * * * 1927 0 0 I 142 * * * * * * * 1761 * * * * * * 1874 * 2823 1782 * * 142 0 * * * * * * 1927 0 0 K 143 * * * 1874 * * * * 771 * * * * * 2823 * * * * * 143 0 * * * * * * 1927 0 0 T 144 * * * * * * * 1874 * * * * * * * * 1761 1900 * 2607 144 0 * * * * * * 1927 0 0 T 145 1874 * * * * * * * * * * * * * * * 459 * * * 145 0 * * * * * * 1927 0 0 P 146 * * * * * * 2658 * * * * * 814 * * * * * * 1874 146 0 * * * * * * 1927 0 0 E 147 * * * 459 * * * * * * * * * * * 1874 * * * * 147 0 * * * * * * 1927 0 0 G 148 * * 2658 1324 * 1847 * * * * * 2607 * * * * * * * * 148 0 * * * * * * 1927 0 0 T 149 1874 2607 * * * * * * * * * * * * * 2823 1245 * * * 149 0 * * * * * * 1927 0 0 E 150 * * * 1733 * * * 1874 * * * * * * * * * 1230 * * 150 0 * * * * * * 1927 0 0 E 151 * * * 829 * * * * * * * * 1874 2607 * * * * * * 151 0 * * * * * * 1927 0 0 W 152 * * * * * * * * * * * * * * * * * * 0 * 152 0 * * 0 * * * 1927 0 0 //