HHsearch 1.5 NAME d1wjua_ FAM FILE d1wjua_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1wjua_.a3m DATE Tue Mar 9 00:18:14 2010 LENG 100 match states, 100 columns in multiple alignment FILT 104 out of 484 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.9 EVD 0.3926 -1.2275 SEQ >ss_dssp CCCCCCCCSSSCCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCCCCCSCCC >sa_dssp EEEEEEEEEEEEEDDACACACCCEEDEEEEDCDBEBDCECDAEDACCDAAEDCECECEEACACBEEEDAECEDDAEECDBDDECEADADDDEEEEEEEEE >ss_pred CCCCCCCCEEEEECCEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEECCCEECCCCEEEEEEECCCCEEEEEEECCCCCCCCC >ss_conf 9876667513341342899997057887728999945242189999999977489953556464170615884245466168988999982688899999 >Consensus xxxxxxxxxxxxxgxatlxvxlxxrxxxxrxxxlevxxxxTVxxLKxxIxxxxgixxxxxrLiyxGKxLxdxxtLxxygIxxxsxIxvixxxxxxxpxsg >d1wjua_ GSSGSSGDNYRTTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQSSGPSSG >UniRef50_A9RPN9(10-106:1091) Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RPN9_PHYPA E=7e-06 s/c=0.53 id=21% cov=97% GSSGSGAVPESEAGVGeTVEIRI--KTLDSQSYTLRVDKNVAVPALKEQLATVSGVPVENQRLICRGKVLKDDQLLSAYNVEDGHTLHLV--ARQPPPSS G >UniRef50_UPI00006A500D(6-90:527) PREDICTED: similar to ubiquilin 1 n=1 Tax=Ciona intestinalis RepID=UPI00006A500D E=1e-17 s/c=1.07 id=14% cov=72% -----------QTTITSEETIKITLKTPKEKQEFTVSPKISVKDLKAEVSKKFNATTEQLVLIFSGKILKDAETIDHHMIKN------------------ >UniRef50_A2FER2(125-192:378) Ubiquitin family protein n=3 Tax=Trichomonas vaginalis RepID=A2FER2_TRIVA E=5e-06 s/c=0.77 id=16% cov=69% ---------------ANIDVLL---SSGKRWRFDDIDLNTSVENFKSIVHEKTDIPIENLGMISAGQLMRNDHTLKEYKIQNDSTI-------------- >UniRef50_P34675(9-90:1620) Uncharacterized protein ZK688.5 n=2 Tax=Caenorhabditis elegans RepID=YO25_CAEEL E=5e-05 s/c=0.60 id=17% cov=54% ----------------------------DREATVTIGLQDTIQSLIDLGRREMNIQSGFQRVIAGGRVLNSTQTVQAAGIS------------------- >UniRef50_Q8WUN7(128-230:234) Ubiquitin domain-containing protein 2 n=61 Tax=Eukaryota RepID=UBTD2_HUMAN E=2e-05 s/c=0.49 id=11% cov=46% --------------------------------------------MKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVI----------- >UniRef50_A0DWV1(1-76:331) Chromosome undetermined scaffold_67, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0DWV1_PARTE E=1e-06 s/c=0.72 id=19% cov=47% -------------------------------------------NIKEKIEQNKQFEIAQQKLLRKGTLLQNEQTVAELGLQEKDFLVVM----------- >UniRef50_Q6TH22(3-87:411) Protein DDI1 homolog 2 n=5 Tax=Euteleostomi RepID=DDI2_DANRE E=5e-06 s/c=0.61 id=20% cov=54% -----------------LTVFCAPRDRSETTFALDVSPELELRDFLALCELESGIPAGEIQIIYAEQPLQ------------------------------ >UniRef50_A5AW52(9-72:284) Putative uncharacterized protein n=2 Tax=Vitis vinifera RepID=A5AW52_VITVI E=5e-05 s/c=0.76 id=15% cov=47% -------------------------------------------EIKEKVQKYHGIPASRQTLFFNGHLLQDNRDIPSMQMFYNCRIQMI----------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1692 0 0 S 2 * * * * * * * * * * * * * * * 0 * * * * 2 0 * * * * * * 1692 0 0 S 3 * * * * * * * * * * * * * * * 0 * * * * 3 0 * * * * * * 2232 0 0 G 4 * * * * * 0 * * * * * * * * * * * * * * 4 0 * * * * * * 2232 0 0 S 5 * * * * * * * * * * * * * 2011 * 411 * * * * 5 0 * * * * * * 2768 0 0 S 6 2835 * * * * 782 * * * * * * * * * 1845 * * * * 6 0 * * * * * * 3570 0 0 G 7 3161 * * * * 3267 * * 2380 * * 1064 * * 3136 * * * * * 7 0 * * * * * * 4123 0 0 D 8 * * 2291 * * * * * 1064 * 3136 3448 * * * * * 3161 * * 8 0 * * * * * * 4123 0 0 N 9 * * * 2411 * * 3448 * 3218 * * 3267 3161 * 1676 * * 3569 * * 9 0 * * * * * * 4123 0 0 Y 10 * * * 3256 707 * * 3237 * * * * * * * * * * * 2500 10 0 * * * * * * 4250 0 0 R 11 * * * * * * * * 1954 * * * * 1886 1837 2384 * * * * 11 0 * * * * * * 4250 0 0 T 12 3855 * * 1791 * * * * * * 3782 * * 2569 3665 3700 2029 * * * 12 0 * * * * * * 4663 0 0 T 13 3632 * * * * * 3594 * * 3782 * * * 3669 * 2254 1360 3540 * * 13 0 * * * * * * 4663 0 0 G 14 3972 * 3679 * 3901 659 * * 3735 * * * * * * * 3594 * * * 14 0 * * * * * * 4724 0 0 I 15 * * * 4052 * 2846 * 1372 * 2828 * * 3901 * * * 3829 2876 * * 15 0 * * * * * * 4724 0 0 A 16 594 * * * * 3143 * * * * 4040 * * * * 3280 4050 * * * 16 87 4092 * 0 * * * 5199 1000 0 T 17 3973 4040 * * * * * * * * * 4061 4127 4195 * 2576 900 * * * 17 0 * * * * * * 5199 0 0 I 18 * * * 4373 * * * 2142 4459 1158 2882 * * * * * * 3383 * * 18 0 * * * * * * 5694 0 0 E 19 * * 3518 1901 * * * * 3349 * * 4276 3137 3263 2901 4723 4030 4493 * * 19 0 * * * * * * 5922 0 0 V 20 * * * * * * * 2302 * 2633 4297 * * * * * 4472 889 * * 20 76 4276 * 3170 170 * * 5922 1000 0 F 21 * * * * 2014 * 3616 3503 2440 3548 * * * * 2465 4351 4427 * * 4788 21 0 * * * * * * 5922 0 0 L 22 4525 4068 * * 4340 * 4719 2693 4579 1247 * * * * 4233 4658 * 3335 * * 22 359 * 2183 * * * * 6013 0 0 P 23 3085 * * * * * * 4255 3944 4204 * * 1955 * * 3156 2937 2252 * * 23 74 * 4314 * * * 0 5667 0 3111 P 24 * * * 3301 3872 2654 4097 * 4203 3859 * * 2351 * 4114 3812 3152 4258 * * 24 0 * * * * 879 1132 5596 0 3226 R 25 * * * 3408 * * * * 2408 4864 * * 4676 3688 1289 3824 4251 4875 * * 25 0 * * * * 604 1548 6005 0 2234 L 26 * * 3489 4796 * 4962 3625 4980 2598 3218 4787 2970 * * * 2973 2588 * * * 26 0 * * * * 0 * 6199 0 1000 K 27 4674 * 3162 5127 * 3264 * 4733 3969 4244 * 3486 4903 * 3247 2266 3327 5233 * * 27 40 * 5176 * * * * 6311 0 0 K 28 3982 * 5116 3694 * 3270 5074 3917 2183 5034 * * 3700 * 3441 2940 3627 * * * 28 54 4775 * 0 * * 0 6260 1000 1000 D 29 3512 * 2024 4068 * 2638 * * 2167 * * 4286 5283 5764 5104 4367 4309 * * * 29 0 * * * * 0 * 6407 0 1000 R 30 * * 5810 3181 * 5220 * * 1762 * * * * 3392 1453 * 3480 * * * 30 61 4601 * 1000 1000 * * 6509 1594 0 K 31 * * 5342 3565 * * 5099 * 1928 5764 3576 * * 4413 3934 2838 3105 4394 5303 4180 31 44 5069 * 0 * * * 6509 1000 0 N 32 4066 * * 3921 2369 5423 3096 3736 4257 4393 5552 5253 * 5919 4516 3630 4636 3465 * 4435 32 0 * * * * * * 6509 0 0 L 33 3986 5510 4386 3705 3788 * * 5161 3587 2905 * 4721 4524 4262 5382 5462 2291 4264 5557 6011 33 0 * * * * * * 6526 0 0 L 34 * * 5690 * 4564 * * 3772 4791 839 4257 * * * * 5514 * 2928 * 3953 34 0 * * * * * * 6481 0 0 E 35 5831 * 2922 1477 * * 4773 * 3280 * 5866 4354 5514 3569 4924 4202 3438 * * * 35 48 5874 5974 0 * * * 6481 1000 0 T 36 5785 4875 * * 6161 6016 * 2576 * 3095 5609 * * * * 5689 3666 957 * * 36 0 * * * * * 0 6461 0 1000 R 37 5768 * 3051 3250 * 4481 5334 * 2927 5886 5693 3980 4731 3703 2656 3139 3866 * * * 37 0 * * * * * 0 6461 0 1000 L 38 4839 * 5651 4411 * 4975 * * 3888 1578 4413 * 2136 4801 4965 4457 4128 5736 * * 38 25 5853 * 1000 1000 * 0 6477 1000 1000 H 39 * * 1733 3774 * * 4206 * 4450 * * 2705 * 5294 * 2250 3023 * 6167 * 39 0 * * * * * 0 6346 0 1000 I 40 3731 * 2050 3464 * 5560 * 2418 * 3442 6463 4577 * 3950 * 3386 3960 6126 * * 40 0 * * * * * 0 6346 0 1000 T 41 6220 * 4459 5079 * 6335 * 5908 5452 4585 * * 6168 * 6429 2868 671 5182 * * 41 0 * * * * * 0 6448 0 1000 G 42 4676 * * * * 2645 * 2376 * 4598 * * * * * 6033 5995 899 * * 42 0 * * * * * 0 6435 0 1000 R 43 2399 * 4068 2794 * 4186 6431 * 2895 3864 * 5196 6520 4025 2947 3217 * * * * 43 0 * * * * * 0 6445 0 1000 E 44 5540 * 2484 1805 * 5397 4554 * 4522 * 5418 3514 * 3319 6715 3124 5176 4613 * * 44 0 * * * * 0 * 6625 0 1000 L 45 5976 * * * 3175 * * 2651 * 852 * * * * * * * 2642 * * 45 0 * * * * * * 6689 0 0 R 46 * 6453 * * * * * 4781 455 5354 5353 * * 4972 2962 * * * * 6230 46 0 * * * * * * 6689 0 0 S 47 2577 * 4252 2221 5476 6706 6077 5975 3151 6542 6367 4900 * 3256 3767 3568 5224 5629 * 5364 47 0 * * * * * * 6689 0 0 K 48 5019 5618 * 3615 5908 * 7186 4552 1761 3030 4516 6226 * 2705 3566 4531 5963 5095 * * 48 0 * * * * * * 6689 0 0 I 49 5593 5773 * * 6411 6132 * 1315 * 2315 5517 * * * * * 6744 1803 * 6126 49 0 * * * * * * 6761 0 0 A 50 1833 6395 * 2942 4255 3885 4936 * * * 4949 5719 * 3516 4340 2669 * 6251 6990 4101 50 14 6688 * 1000 1000 * * 6761 1000 0 E 51 3659 7417 3101 2340 * 5614 * 5280 2610 4294 5749 6355 5936 3471 5271 3188 5036 5911 * 5644 51 0 * * * * * * 6761 0 0 T 52 5951 * 5940 2956 6797 * 5798 3894 2002 3523 5953 4595 * 4020 3076 6126 5112 3561 * 4570 52 21 * 6126 * * * * 6761 0 0 F 53 * 6348 6675 2712 2675 * 6513 3391 3905 2977 5079 5743 * 4363 * 3980 2870 4337 * 5496 53 16 6479 * 2000 415 0 * 6738 1000 1000 G 54 6688 6168 3652 4342 * 1039 4186 * 4699 * * 3171 6311 5321 6395 3394 6423 * * * 54 25 5864 * 520 1725 * * 6761 1601 0 L 55 4518 5244 5424 6126 5707 6478 * 1703 6415 2708 5187 6566 * 6424 * 4768 4525 2251 6374 4709 55 29 5651 * 0 * * * 6761 1000 0 Q 56 4615 * 3268 3221 6634 6254 5621 4817 4480 * * 4144 1472 3874 4551 3954 4973 * * * 56 31 6361 6810 1000 1000 * * 6761 1000 0 E 57 2461 6574 6532 5031 6430 6417 * 3018 4699 5746 * * 1642 * 4869 3710 5229 3355 * 7105 57 13 6819 * 1000 1000 * 0 6680 1000 1000 N 58 3806 * 2372 2061 6336 4159 6819 7307 5055 * * 2896 6899 4726 4917 2751 6963 6392 * * 58 0 * * * * 0 * 6680 0 1000 Y 59 5282 4803 3330 3264 4167 6761 5651 * 3335 4074 6210 3733 * 2633 3040 4028 5857 5501 * 5678 59 0 * * * * * * 6761 0 0 I 60 * * * * 4643 * 6142 2099 6166 3008 3993 * * 1406 * * 5663 3308 * 6255 60 0 * * * * * * 6764 0 0 K 61 5548 6095 6818 6487 * 5872 6131 4518 1870 5194 * 5412 * 4612 1530 6119 4781 3566 5494 * 61 0 * * * * * * 6769 0 0 I 62 * 5667 * * 4960 * * 3207 * 594 4641 * * * * * * 3367 4632 * 62 0 * * * * * * 6789 0 0 V 63 6727 5734 * * 4267 * * 1150 * 2611 4765 6769 * 6329 * 6401 4324 2710 * 4941 63 0 * * * * * * 6789 0 0 I 64 4889 3968 * * 1779 * 4197 4959 * 6368 * * * * 6641 4541 * 5606 6361 1229 64 13 * 6830 * * * * 6789 0 0 N 65 3100 4511 * 4430 * 3614 5468 * 2519 5588 5723 2660 6198 3224 3703 3210 6506 * * * 65 0 * * * * 0 * 6783 0 1000 K 66 5432 * 4706 6698 * 359 6146 * 4959 * 6961 5897 * * 4835 4886 6739 * * * 66 0 * * * * * * 6789 0 0 K 67 5565 * 6285 6877 * 6527 5675 6716 928 5740 * 6201 * 3172 2205 6368 5661 * * * 67 0 * * * * * * 6789 0 0 Q 68 6264 6114 * 2659 6938 6402 6560 2889 4625 3089 5469 6125 4019 2836 6699 5642 * 2170 * * 68 0 * * * * * * 6789 0 0 L 69 5520 * * * * * * 4062 * 388 3373 * 6353 * 5294 * * 5667 * * 69 24 5908 * 0 * * * 6789 1720 0 Q 70 5399 * 3522 2182 * 4927 6902 6175 2453 6704 * 5306 6141 2573 4566 3282 4390 5548 * * 70 19 6247 * 0 * * * 6789 1000 0 L 71 5148 * 808 4670 * 4820 * * 5339 6515 6141 2459 5711 7255 5958 4631 6363 * * * 71 33 6625 6340 0 * * * 6760 1000 0 G 72 4331 * 1983 2739 * 2767 4281 * 5596 * * 3326 5029 6051 * 3481 4417 4420 * * 72 0 * * * * 0 * 6758 0 1000 K 73 4292 5819 3783 3571 5349 6658 4261 4791 2625 4917 5217 5780 * 3276 3540 4381 3191 5657 * 4477 73 0 * * * * * * 6760 0 0 T 74 6169 * 4720 6109 * * * 4610 4859 3668 5398 4886 3514 5457 5665 3298 1140 5352 * 6368 74 0 * * * * * * 6760 0 0 L 75 * * * * 4731 * * 3125 * 588 3428 * * * * * * 3480 * * 75 11 * 7080 * * * * 6760 0 0 E 76 3013 5465 3289 2394 5405 4329 5329 * 3424 6428 * 6583 * 3722 4507 2389 5424 * * 6210 76 0 * * * * 0 * 6758 0 1000 E 77 3779 * 2269 1966 * 5304 4664 * 4681 * 5542 4845 * 3692 * 2437 5936 * * 5309 77 0 * * * * * * 6761 0 0 Q 78 4236 2773 * * 5308 * 4724 4647 5936 3688 * 6017 * 3275 6360 6482 * 4799 * 1232 78 0 * * * * * * 6761 0 0 G 79 * * 3867 4877 * 1040 5549 * 3517 * 6754 2530 6070 4059 5550 6435 6356 * * * 79 11 * 6998 * * * * 6729 0 0 V 80 * * * * 6394 * * 977 * 2254 6285 * * * * 7879 * 2055 * 6302 80 0 * * * * 0 * 6730 0 1000 A 81 4235 6382 5377 3524 6796 4040 5769 * 1961 5161 * 6928 4431 3131 3683 3537 3367 5543 * * 81 0 * * * * * * 6692 0 0 H 82 5503 * 2467 2661 6033 4625 4268 * 4466 5801 * 2195 4332 4730 5351 3277 6666 * * 5333 82 0 * * * * * * 6668 0 0 N 83 6491 * 3847 4323 * 1617 6123 * 3754 6237 5780 1749 * 4824 4713 4655 * * * 6285 83 0 * * * * * * 6607 0 0 V 84 3851 5480 2897 5979 5275 6067 4508 5853 6048 6291 5407 5617 * 3921 * 1343 4317 3755 * * 84 0 * * * * * * 6567 0 0 K 85 5392 * * 5883 4053 * 5938 3734 2957 6271 4509 * * 3833 3408 6549 1569 3188 * * 85 0 * * * * * * 6573 0 0 A 86 5086 * * * 4914 * 5445 1269 * 2225 * * * * * * * 1808 * * 86 79 4238 * 0 * * * 6573 2402 0 M 87 6316 * * * 4739 * 2361 3422 * 2815 2842 4382 * 3953 5886 5605 5480 3254 * 3276 87 56 4727 * 0 * * * 6483 2211 0 V 88 3823 5265 * * 4864 * * 3265 * 2203 3718 * * * * * * 1123 * 6313 88 0 * * * * * * 6484 0 0 L 89 6442 * * 4426 4855 * * 2244 * 1833 2757 * * 5934 * 5531 * 2122 * * 89 21 * 6084 * * * * 6401 0 0 E 90 4408 * * 2911 * 4561 5135 * 2984 4266 * * 5703 5611 1522 * 5720 2889 * 5117 90 31 5575 * 0 * * 0 6071 1000 1000 L 91 * * * 5105 4207 * * 4119 2990 2806 3701 4876 3154 3829 2891 3761 4166 4952 * * 91 0 * * * * 0 * 6062 0 1000 K 92 4291 * 5050 * * * 6177 5713 1509 4797 * 4195 2994 4066 2969 3258 5243 * * * 92 44 * 5051 * * * * 5981 0 0 Q 93 4966 * 5159 2772 * 4013 * * 2068 * * * 3116 2938 2609 3583 * * * * 93 0 * * * * * 0 5916 0 1000 S 94 4054 * 3473 * * 3100 * * 3935 4638 4972 4221 2506 5100 4713 2542 2976 * * * 94 0 * * * * 0 * 5680 0 1000 S 95 3314 * 4709 3682 * 3194 * * 4926 * * 4910 2332 4066 * 1701 4577 * * * 95 77 4270 * 1585 585 * * 5580 1000 0 G 96 2371 * * * * 1216 * * * 3609 * 3821 4610 * 3536 4557 4214 * * * 96 0 * * * * * * 5075 0 0 P 97 3203 * * * * 2704 * * * * * * 520 4621 * * * * * * 97 0 * * * * * * 4932 0 0 S 98 3016 * * 4127 * * * 3242 * * * 4126 3940 * * 1835 2498 2903 * * 98 0 * * * * * * 4603 0 0 S 99 * * 3615 * * 4055 * * * * * * * * * 590 2909 4045 * * 99 0 * * * * * * 4474 0 0 G 100 * * * * * 318 * * * * * * * * * 2339 * * * * 100 0 * * 0 * * * 3912 0 0 //