HHsearch 1.5 NAME d1wija_ FAM FILE d1wija_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1wija_.a3m DATE Mon Mar 8 22:39:49 2010 LENG 127 match states, 127 columns in multiple alignment FILT 20 out of 24 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.4 EVD 0.4422 0.6750 SEQ >ss_dssp CCCCSTTSCHHHHHHHHHHHSSSSSSCTTSCCTTTCCHHHHCCCSCCHHHHHHTCCTTCCCCCCCGGGCCHHHHHHHHHHHHHHTGGGHHHHHHTTTTSS SSTTTCCSHHHHHHHHHHTTTTTCSCC >sa_dssp EDDDBEDBEEEBBDCACEDACECAEDCDEECEDEEBCCEBBBBDAECCBAEDDEBDDEECDCBEDEEECEECCCBAAABBAACDBCEDCDDACDCADEDE EBEEEBEEECCDBACCBADCBDDEEEE >ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHC >ss_conf 9678999876579999999976189777724676889789789998610044136668998988873344899999999999973539999999996425 467765677789999996305888509 >Consensus xxxxLxxLqdxtLgsllsaLmqhCxPPqRxxplxkgxpPPWWPTGxExWWxxlgxxxxxxPPyrkphdLkKawKvxvLxAviKHmsPdfxrirxxVrxSk xlqxKmtakEsxxWxxvlxxEexxxxx >d1wija_ SQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGNEEWWVKLGLPKSQSPPYRKPHDLKKMWKVGVLTAVINHMLPDIAKIKRHVRQSK CLQDKMTAKESAIWLAVLNQEESLIQQ >UniRef50_B9T4G8(141-267:476) Transcription factor, putative n=2 Tax=Ricinus communis RepID=B9T4G8_RICCO E=5e-42 s/c=1.35 id=64% cov=100% SMHLLQDLQDSTLGSLLSALMQRCVPPQRRFPLERGLAPPWWPTGNEIWWGEQGPSREHGiPPYKKPHDLKKAWKLSVLAAVIKHLSPNFDRMRRLVTQS KCLQAKMTAKESATWSKVVNQEEALLQ- >UniRef50_Q6YVT1(165-290:619) Os08g0508700 protein n=8 Tax=commelinids RepID=Q6YVT1_ORYSJ E=5e-57 s/c=1.75 id=72% cov=100% NQHSLMDLQDATLGSLLSSLMQHCSPQQRKYPLDKGVPPPWWPSGNEDWWISLGLPMGISPPYRKPHDLKKVWKVGVLTGVIKHMAPNFDKIRNCVRKSK CLQDKMTAKESLIWLGVLRREEIYFR- >UniRef50_Q711J2(206-332:621) Ethylene-insensitive 3 protein n=1 Tax=Phalaenopsis equestris RepID=Q711J2_PHAEQ E=8e-57 s/c=1.73 id=73% cov=97% ----LQELQDTTLGSLLSALMQHCDPPQRRFPLEKGIPPPWWPTGKEDWWPQVGFSNDQpPPPYKKPHDLKKAWKVGVLTSVIKHLSPDIDKIRRLVRQS KCLQDKMTAKESATWLAVVKQEEDMFR- >UniRef50_Q9FJQ5(181-307:557) ETHYLENE INSENSITIVE 3-like 5 protein n=2 Tax=Brassicaceae RepID=EIL5_ARATH E=2e-54 s/c=1.68 id=62% cov=98% ---MLHELQDTTLGSLLSALMQHCVPPQRRFPLEKGLAPPWWPNGTELWWGEQGAAAFEhgPPPYRKPHDLRKAWKVSVLAAVIKHMSPNLERVRRLARQ SKCLQDKMMAKETDTWSRVLNQEEARLNR >UniRef50_Q7XV12(174-302:445) OSJNBa0036B21.5 protein n=8 Tax=Poaceae RepID=Q7XV12_ORYSJ E=4e-46 s/c=1.43 id=56% cov=98% ----LLDIQDSTLGSLLSALIQHCEPPQRSFPLDRGLPPPWWPTGGEAWWGLQGEAQASqgPPPYRKPHDLKKAWKISLLraSAVIKHLSPRFDQIRKLV WQSKRLQHKMSARDADTWSRVITQEEALSRH >UniRef50_Q6Z4J6(100-216:465) Putative uncharacterized protein OSJNBb0002J01.22 n=4 Tax=Oryza sativa RepID=Q6Z4J6_ORYSJ E=3e-32 s/c=1.19 id=36% cov=91% -------LADHVLERMVKVLMRKCHPPQALYPLIGKSPlrPPWWPTGREQWWPELGA-GAVVPPYRPAPLLSKAEKEVAVVAMVKNLVPDFERLFMAVRM APSVTSRITDAEARAWDDGVAGER----- >UniRef50_O23115(181-306:518) ETHYLENE INSENSITIVE 3-like 2 protein n=1 Tax=Arabidopsis thaliana RepID=EIL2_ARATH E=6e-49 s/c=1.54 id=59% cov=98% ----LLELQDTTLGALLSALFPHCNPPQRRFPLEKGVTPPWWPTGKEDWWDQLSLPvdfRGVPPPYKKPHDLKKLWKIGVLIGVIRHMASDISNIPNLVR RSRSLQEKMTSREGALWLAALYREKAIVDQ >UniRef50_Q8LIR8(87-211:356) Putative uncharacterized protein OJ1118_B03.107 n=3 Tax=Oryza sativa RepID=Q8LIR8_ORYSJ E=1e-21 s/c=0.83 id=37% cov=90% ----LCRLRNGTLERMMREMAQECTPPlvarrDRKSGATPPPPPPWWPTAEEPWWGtevaaHLRGRRMATPvPFASPRRLAKAEKVAVLVAVVRHVAPDF GRLA-----AAAGRSRLTELESSIWESALRGER----- >UniRef50_C5XDD4(214-342:583) Putative uncharacterized protein Sb02g006580 n=1 Tax=Sorghum bicolor RepID=C5XDD4_SORBI E=2e-21 s/c=0.80 id=41% cov=91% ----LGKIENGALGRMISSLMPVCNPPLRQgqhHQSKTGPPPPWWPTGSEDWWATellehldsvAALSSAPVPvPFAPSYGLKKPQKVAVLVAIVKHLAP DFARIASAVRHS----GKLSISETDLWHSALNNERA---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * 2349 * * * * * * * * 2416 * * * 698 * * * * 1 0 * * * * * * 1458 0 0 Q 2 * * * * * * * * * * 2180 * * 360 * * * * * * 2 0 * * * * * * 1458 0 0 F 3 * * * * 2690 * 866 * * * * * * * * 1755 * * * * 3 0 * * * * * * 1458 0 0 V 4 3362 * * * * * * * * 2077 2153 * * * * 2114 * 2252 * * 4 0 * * * * * * 1560 0 0 L 5 * * * * * * * * * 0 * * * * * * * * * * 5 0 * * * * * * 2255 0 0 Q 6 * 2695 * * * 3019 2453 * * 2963 3413 * * 1655 * * * * * * 6 0 * * * * * * 2255 0 0 D 7 * * 1462 1477 * * * * 3019 * * * * * 2695 * * * * * 7 0 * * * * * * 2255 0 0 L 8 * * * * * * * 2310 * 325 * * * * * * * * * * 8 0 * * * * * * 2454 0 0 Q 9 2959 * * 3269 * * * * * * * * * 638 2998 * * * * * 9 0 * * * * * * 2454 0 0 D 10 * * 375 * * * * * * * * 2127 * * * * * * * * 10 0 * * * * * * 2454 0 0 A 11 2442 * * * * 1886 2959 * * * * * * * * 2852 1846 * * * 11 0 * * * * * * 2454 0 0 T 12 3269 * * * * * * * * * * * * * * * 381 2959 * * 12 0 * * * * * * 2454 0 0 L 13 * * * * * * * * * 0 * * * * * * * * * * 13 0 * * * * * * 2454 0 0 G 14 * * * 1978 * 422 * * * * * * * * * * * * * * 14 0 * * * * * * 2454 0 0 S 15 3876 * * * * * * * * * * * * * 1484 800 * * * * 15 0 * * * * * * 2454 0 0 L 16 * * * * * * * * * 638 1484 * * * * * * * * * 16 0 * * * * * * 2454 0 0 L 17 * * * * * * * 3269 * 638 2998 * * * * * * 2959 * * 17 0 * * * * * * 2454 0 0 S 18 * * * * * * * * 2959 * * * * * 2998 422 * * * * 18 0 * * * * * * 2454 0 0 S 19 1008 * * 2998 * * * * * * * * * * * 2006 * 2959 * * 19 0 * * * * * * 2454 0 0 L 20 * * * * 4687 * * * * 258 2998 * * * * * * * * * 20 0 * * * * * * 2454 0 0 M 21 2998 * * * 3876 * * 3353 * * 496 * * * * * * * * * 21 0 * * * * * * 2454 0 0 Q 22 * * * * * * * * * * * * 2541 515 2959 * * * * * 22 0 * * * * * * 2454 0 0 H 23 * * * 2998 * * 732 * 2959 * * * * * 4622 * * 3269 * * 23 0 * * * * * * 2454 0 0 C 24 * 0 * * * * * * * * * * * * * * * * * * 24 0 * * * * * * 2454 0 0 D 25 4687 * 2314 2926 * * 2959 * * * 4661 2541 * * * 3582 2998 3646 * * 25 0 * * * * * * 2454 0 0 P 26 * * * * * * * * * * * * 0 * * * * * * * 26 0 * * * * * * 2454 0 0 P 27 * * * * * * * * * * * * 126 3582 * * * * * * 27 193 2998 * 2322 322 * * 2454 1000 0 Q 28 * * 2998 * * * * * * 3269 * * * 375 * * * * * * 28 0 * * * * * * 2454 0 0 R 29 2959 * * * * * * * * * * * * * 199 * * * * * 29 0 * * * * * * 2454 0 0 K 30 * * * * * * * * 1887 2959 * * * 3269 1483 2840 * * * * 30 158 3269 * 1585 585 * * 2454 1000 0 Y 31 * * * * 1376 * 3269 * * * * * * * * 2998 * * * 1374 31 0 * * * * * * 2454 0 0 P 32 * * * * * 2998 * * * * * * 375 3269 * * * * * * 32 0 * * * * * * 2454 0 0 L 33 2998 * * * * * * * * 375 * * * * * 3269 * * * * 33 0 * * * * * * 2454 0 0 E 34 * * 2463 1117 * * * 2959 3269 * * * * * * * 2998 * * * 34 0 * * * * * * 2454 0 0 K 35 * * * * * 2959 * * 989 * * * 2998 * 2852 * 3269 * * * 35 0 * * * * * * 2454 0 0 G 36 * * * * * 422 * * 2959 * * * 2998 * * * * * * * 36 0 * * * * * * 2454 0 0 T 37 * * * * * * * 3213 * 2207 * * 2127 * * 2959 4722 1836 * * 37 0 * * * * * * 2454 0 0 P 38 2264 * * * * * * * * * * * 603 * * 3942 3876 * * * 38 199 2959 * 1000 1000 * * 2454 1000 0 P 39 * * * * * * * * * * * * 0 * * * * * * * 39 0 * * * * * * 2454 0 0 P 40 * * * * * * * * * * * * 0 * * * * * * * 40 0 * * * * * * 2454 0 0 W 41 * * * * * * * * * * * * * * * * * * 0 * 41 0 * * * * * * 2454 0 0 W 42 * * * * * * * * * * * * * * * * * * 0 * 42 0 * * * * * * 2454 0 0 P 43 * * * * * * * * * * * * 0 * * * * * * * 43 0 * * * * * * 2454 0 0 T 44 * * * * * * * * * * * 3820 * * * 3582 242 * * * 44 0 * * * * * * 2454 0 0 G 45 2998 * * * * 193 * * * * * * * * * * * * * * 45 0 * * * * * * 2454 0 0 N 46 * * 4990 2998 * 4385 * * 3284 * * 1772 * 4687 2485 3269 3666 * * * 46 0 * * * * * * 2454 0 0 E 47 * * * 0 * * * * * * * * * * * * * * * * 47 0 * * * * * * 2454 0 0 E 48 3353 * 1835 2573 * * * 4622 * 3088 * * 2998 2959 * 4582 * * * * 48 0 * * * * * * 2454 0 0 W 49 * * * * * * * * * * * * * * * * * * 0 * 49 0 * * * * * * 2454 0 0 W 50 * * * * * * * * * * * * * * * * * * 0 * 50 0 * * * * * * 2454 0 0 V 51 2866 * 3876 * * 1391 * 4582 * * * * 1729 * * * * 3837 * * 51 193 2998 * 2322 322 * * 2454 1000 0 K 52 4582 * 4687 1839 * * 2998 * 3273 4385 4321 * * 2574 * 4582 3269 * * * 52 158 3269 * 3170 170 * * 2454 1000 0 L 53 3269 * * * * * * * * 806 * * * 1965 * * 4900 4853 * * 53 0 * * * * * * 2454 0 0 G 54 3269 * * * * 508 * * * * * * * * 2998 3876 * * * * 54 0 * * * * * * 2454 0 0 L 55 2269 * 4321 4385 4853 2998 * 3831 * 1357 * * 4622 * * 4890 * * * * 55 199 * 2959 * * * * 2454 0 0 P 56 2046 * * * * * * * * * * * 1477 * 2695 2034 * * * * 56 113 3734 * 1585 585 0 * 2255 1000 1000 K 57 4670 * * * * 2959 4661 * 2488 * 4582 3918 4321 3074 2096 3269 * * * * 57 0 * * * * * * 2454 0 0 S 58 1598 * 3325 2732 4670 2203 * * * * 2998 * * * * 4722 * * * * 58 0 * * * * * * 2454 0 0 Q 59 2998 * * 3626 * * 2942 4582 * * * * 3269 1870 * 4385 * 2346 * * 59 328 2299 * 743 1312 * * 2454 1466 0 S 60 4582 * * * * 2440 * * 4900 * * * 1882 * * 3162 2998 2106 * * 60 294 2440 * 0 * * * 2454 1368 0 P 61 * * * * * * * * * * * * 0 * * * * * * * 61 375 2127 * 0 * * * 2454 1411 0 P 62 * * * * * * * * * * * * 0 * * * * * * * 62 0 * * * * * * 2454 0 0 Y 63 * * * * 2127 * * * * * * * * * * * * * * 375 63 0 * * * * * * 2454 0 0 R 64 2127 * * * * * * * 1710 * * * * * 1103 * * * * * 64 0 * * * * * * 2454 0 0 K 65 * * * * * * * * 638 * * * 2106 * * 2998 * * * * 65 0 * * * * * * 2454 0 0 P 66 2959 * * * * * * * * * * * 381 * * 3269 * * * * 66 0 * * * * * * 2454 0 0 H 67 * * * * * * 638 * * * * * 2959 * 2998 * * * * 3269 67 0 * * * * * * 2454 0 0 D 68 * * 638 * * 3269 * * * 2959 * * * * 2998 * * * * * 68 0 * * * * * * 2454 0 0 L 69 * * * * * * * * * 0 * * * * * * * * * * 69 0 * * * * * * 2454 0 0 K 70 2998 * * * * * * * 583 * * * * * 3666 2959 * * * * 70 0 * * * * * * 2454 0 0 K 71 * * * * * * * * 0 * * * * * * * * * * * 71 0 * * * * * * 2454 0 0 M 72 733 * * * * * * * * 3876 3273 * 3269 * * 4661 * 3582 * * 72 0 * * * * * * 2454 0 0 W 73 * * * 1978 * * * * * * * * * 3269 * * * * 638 * 73 0 * * * * * * 2454 0 0 K 74 * * * * * * * * 0 * * * * * * * * * * * 74 0 * * * * * * 2454 0 0 V 75 * * * 2959 * * * 2591 * 4622 * * * * * * * 589 * * 75 0 * * * * * * 2454 0 0 G 76 2127 * * * * 1639 * * * * * * * * * 1638 * 2959 * * 76 0 * * * * * * 2454 0 0 V 77 2959 * * * * * * * * 3353 * * * * * * * 371 * * 77 0 * * * * * * 2454 0 0 L 78 * * * * * * * * * 199 * * * * * * * 2959 * * 78 71 4385 * 1000 1000 * * 2454 1000 0 T 79 2660 * * * * * * 3876 * * * * * * * 3353 1652 1484 * * 79 0 * * * * * * 2454 0 0 A 80 297 * * * * 2722 * * * * * * * * * 4853 * * * * 80 0 * * * * * * 2454 0 0 V 81 * * * * * * * 2811 * * 2959 * * * * * * 456 * * 81 0 * * * * * * 2454 0 0 I 82 * * * * * * * 716 * * 4890 * * * * * * 1484 * * 82 0 * * * * * * 2454 0 0 N 83 * * * * * * * * 379 * * 4722 * * 2371 * * * * * 83 0 * * * * * * 2454 0 0 H 84 * * * * * * 199 * * * * 2959 * * * * * * * * 84 0 * * * * * * 2454 0 0 M 85 * * * * * * * * * 1315 1077 * * * * * * 3013 * * 85 0 * * * * * * 2465 0 0 L 86 1414 * * * * * * * * 4751 * * * * * 1284 4337 2972 * * 86 0 * * * * * * 2465 0 0 P 87 * * * * * * * * * * * * 100 * * 3896 * * * * 87 0 * * * * * * 2465 0 0 D 88 * * 611 * * * * * * * * 2009 * * 3369 * * * * * 88 0 * * * * * * 2465 0 0 I 89 * * * * 780 * * 1734 * 3097 * * * * * * * * * * 89 0 * * * * * * 2465 0 0 A 90 2287 * 1725 2336 * 2618 * * * * * * 5000 * * 3316 * * * * 90 0 * * * * * * 2465 0 0 K 91 * * * * * * * * 1621 * * 3896 * 3369 969 * * * * * 91 0 * * * * * * 2465 0 0 I 92 * * * * * * * 883 * 1993 2958 * * * * * * 3685 * * 92 0 * * * * * * 2465 0 0 K 93 2141 * * * 2972 * * * 4751 * * * 3896 * 885 * * * * * 93 191 * 3013 * * * * 2465 0 0 R 94 * * * * * * * * 2503 * 2639 2516 * * 1479 2949 * * * * 94 0 * * * * * 0 2274 0 1000 H 95 1785 4483 * * * * 3541 * * 902 * * * * 4508 * * * * * 95 0 * * * * * 0 2274 0 1000 V 96 3542 * * * * * * * * * * * * * * * * 129 * * 96 0 * * * * * 0 2274 0 1000 R 97 * * * * * * * * * * * * * * 234 * 4496 * 3244 * 97 0 * * * * * 0 2274 0 1000 Q 98 * * * * * * 2949 * 3328 * 2639 * * 902 3734 * * * * * 98 0 * * * * 0 * 2274 0 1000 S 99 1993 * * * * * * * * * * * * * * 418 * * * * 99 156 * 3283 * * * * 2465 0 0 K 100 2718 * * * * * * * 684 * * * 2739 * 3719 * * * * * 100 0 * * * * * 0 2326 0 1000 C 101 2718 1078 * * * * * * * * * * * * 3233 1900 * * * * 101 0 * * * * * 0 2326 0 1000 L 102 * * * * * 2718 * * * 518 * * * * * * * 2739 * * 102 0 * * * * * 0 2326 0 1000 Q 103 * * * * * * * * * * * * * 518 2718 * 2739 * * * 103 0 * * * * 0 * 2326 0 1000 D 104 4643 * 1178 3896 * 3283 3369 * * * * * * * * 1993 * * * * 104 0 * * * * * * 2465 0 0 K 105 * * * * * * * * 418 * * * * * 1993 * * * * * 105 0 * * * * * * 2465 0 0 M 106 * * * * * * * 2972 * 2141 631 * * * * * * * * * 106 0 * * * * * * 2465 0 0 T 107 * * * * * * * * * * 3685 * * * * 2325 469 * * * 107 0 * * * * * * 2465 0 0 A 108 789 * 2972 3013 * * * 3283 * * * * * * * 3896 * * * * 108 0 * * * * * * 2465 0 0 K 109 2972 * * * * * * * 1053 3013 * * * * 2608 3283 * * * * 109 0 * * * * * * 2465 0 0 E 110 * * 3369 147 * * * * * * * * * * * * * * * * 110 0 * * * * * * 2465 0 0 S 111 2157 * * * * 3896 * 4969 * * * * * * * 1130 2187 * * * 111 0 * * * * * * 2465 0 0 A 112 1858 * 1850 * * * * * * 3450 * * * * 2972 2405 4674 * * * 112 0 * * * * * * 2465 0 0 I 113 2499 * * * * * * 1659 * 2557 * * * * * * 1572 * * * 113 0 * * * * * * 2465 0 0 W 114 * * * * * * * * * * * * * * * * * * 0 * 114 0 * * * * * * 2465 0 0 L 115 * * 2972 3013 * * 3283 * * 1350 * * * * * 1979 * * * * 115 0 * * * * * * 2465 0 0 A 116 1892 * 2972 * * 3026 * * 2958 * * * * * 2999 2141 * * * * 116 0 * * * * * * 2465 0 0 V 117 1767 * * * * 2972 * 3938 * * * * * * * * * 961 * * 117 0 * * * * * * 2465 0 0 L 118 * * * * * * * 2625 * 825 * * * * * * * 1870 * * 118 0 * * * * * * 2465 0 0 N 119 2972 * * * * * * * 3901 * * 1466 * 4308 2600 3961 3369 * * 3896 119 0 * * * * * * 2465 0 0 Q 120 * * * * * 1993 * * * * * 3283 * 1138 2384 * * * * * 120 0 * * * * * * 2465 0 0 E 121 * * * 0 * * * * * * * * * * * * * * * * 121 0 * * * * * * 2465 0 0 E 122 * * * 789 * * * * 3896 * * * * * 1498 * * * * * 122 0 * * * * * * 2465 0 0 S 123 806 * 4464 4592 * * * 4243 4262 * * * * * * 2799 * 4576 * 4296 123 0 * * * * * * 2015 0 0 L 124 * * * * * * * 2642 * 859 4213 * * * 4083 3991 * 4329 * 3994 124 0 * * * * * * 1758 0 0 I 125 3103 * 3579 * 2917 * * 3062 * 1894 * * * * * 3660 * 2324 * * 125 0 * * * * * * 1773 0 0 Q 126 * * 3003 * * * 5468 * * * * 3430 * 2166 897 * * * * * 126 0 * * * * * * 1759 0 0 Q 127 * * * 3441 * * 3138 * 3433 * * * * 1223 1871 * * * * * 127 0 * * 0 * * * 1719 0 0 //