HHsearch 1.5 NAME d1ufwa_ FAM FILE d1ufwa_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1ufwa_.a3m DATE Tue Mar 9 00:28:26 2010 LENG 95 match states, 95 columns in multiple alignment FILT 13 out of 17 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.9 EVD 0.4192 0.5454 SEQ >ss_dssp CCSHHHHSCCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHHGGGSEETTEEEEEECCCCC >sa_dssp EEEEEDEEEEEEDEDACBBADBEECDEDBEEDBBEEBCECABEDABEDCEDDEDECDEDDACABADDCDABECADEDBDCEBEEDCAEBDDDEEE >ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCHHHHHHHHCCCEEECCEEEEEEECCCC >ss_conf 95221332013799847999960788665778898789999997305587899999787199998155356767401683733748998525899 >Consensus xxxxxxxxxxqGPpDgTIvVxixsxxxxexxxfdexxxxxLlxxlxxxGeVvlvRxxxxxxwVtFxdgxSALaALxldgxxvxGxxlxIxxxxxx >d1ufwa_ GSSGSSGSSFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKVKGRAVKISGPSSG >UniRef50_O43426(887-967:1573) Synaptojanin-1 n=78 Tax=Eumetazoa RepID=SYNJ1_HUMAN E=2e-27 s/c=1.52 id=39% cov=86% --------AVQGPPDGTVLVSIKS-SLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELLNRTITIA----- >UniRef50_C1DYV2(81-136:226) Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1DYV2_9CHLO E=0.0008 s/c=0.81 id=31% cov=54% --------------------------------------------FGNDGEVVGVRINASNCWIEFAEAAGAISALAKDGTESGGHHLRVSASKT- >UniRef50_B7PK64(787-865:921) Synaptojanin, putative n=1 Tax=Ixodes scapularis RepID=B7PK64_IXOSC E=2e-22 s/c=1.35 id=34% cov=80% -----------GPPDGTVVVRVD----EEGGSFDDHFLSALVHAFSSFGEVVLIRFVAEMLWVTFSEGQSALAAIQLSGTEVDGHRVAVT----- >UniRef50_Q4SFY5(726-810:1191) Chromosome 7 SCAF14601, whole genome shotgun sequence n=1 Tax=Tetraodon nigroviridis RepID=Q4SFY5_TETNG E=4e-20 s/c=1.16 id=34% cov=91% --------ALQGPPDGTIMVSLCSSGPED--YFDDALIDELLDKCTEFGEVILIRFVEEKMWVTFLEGYSALAALSLSASTVLGKVIDIRLKSPG >UniRef50_Q5U0V7(885-970:1218) Synaptojanin, isoform A n=8 Tax=Endopterygota RepID=Q5U0V7_DROME E=4e-19 s/c=1.12 id=35% cov=78% -----------GPPDSTIVVHVleSSATGDEDGPtiYDENVMSALITELSKMGEVTLVRYVEDTMWVTFRDGESALNASSKKSIQVCG----------- >UniRef50_UPI00017929AE(872-949:1027) PREDICTED: similar to synaptojanin CG6562-PB n=1 Tax=Acyrthosiphon pisum RepID=UPI00017929AE E=7e-19 s/c=1.22 id=21% cov=82% -----------GPIDGVILVHIENTDFPLN---DESFKNIMLQGLGSFGKILNARYFTDHAEITYENGRSAANALKIKQISIYNYTLILTA---- >UniRef50_C1N3B1(14-86:235) Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N3B1_9CHLO E=0.0003 s/c=0.64 id=28% cov=48% --------------------------------------------FSQQGPVVAVRVHARSAWVEFADDASTMAALNLDGVTTGGHNLRV------ >UniRef50_A7SQQ5(929-1005:1553) Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SQQ5_NEMVE E=1e-16 s/c=1.14 id=41% cov=78% -----------GPADPTVVVSSD-----QTGDGDEGIdVSELLEVLEPCGDAVLVRVVDEEIIVTFDDGRSALKALELDGKKISGKTAKI------ >UniRef50_Q9GT42(857-936:1119) Protein JC8.10b, partially confirmed by transcript evidence n=5 Tax=Caenorhabditis RepID=Q9GT42_CAEEL E=1e-16 s/c=1.09 id=28% cov=73% -----------GPPDGTIIVSIAG-----KPRFPPQMFPPIHEKLKELGaQVQLSKFDDGDLWIVLNSGEMALAALSMDGLKIGG----------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * 612 * 1533 * * * * * * * * * * * * * * 1 0 * * * * * * 1154 0 0 S 2 * * * * * * * * 1577 * * * * * 1647 1533 * * * * 2 0 * * * * * * 1154 0 0 S 3 * * * * * * * 1577 * * * * * * * 1533 * 1647 * * 3 0 * * * * * * 1154 0 0 G 4 * * * * 612 1533 * * * * * * * * * * * * * * 4 0 * * * * * * 1154 0 0 S 5 * * * * * * * * * * * * * 612 * 1533 * * * * 5 0 * * * * * * 1154 0 0 S 6 * * * 612 * * * * * * * * * * * 1533 * * * * 6 0 * * * * * * 1154 0 0 G 7 * * * * * 1533 * * * * * * * * * * * 612 * * 7 0 * * * * * * 1154 0 0 S 8 * * * * * * * * * * * * * * * 0 * * * * 8 0 * * * * * * 1154 0 0 S 9 981 * * * * * * * * * * * * * * 1019 * * * * 9 0 * * * * * * 1756 0 0 F 10 * * * * 1019 * * * * 1956 * * * * * * * 2007 * * 10 0 * * * * * * 1756 0 0 Q 11 * * * * * * * * * * * * * 0 * * * * * * 11 0 * * * * * * 1756 0 0 G 12 * * * * * 0 * * * * * * * * * * * * * * 12 0 * * * * * * 2981 0 0 P 13 * * * * * * * * * * * * 0 * * * * * * * 13 0 * * * * * * 2981 0 0 L 14 3209 * * * * * * 2686 * 2308 * * 904 * * * * * * * 14 0 * * * * * * 2981 0 0 D 15 * * 0 * * * * * * * * * * * * * * * * * 15 0 * * * * * * 2981 0 0 A 16 2308 * * * * 804 * * * * * * 3209 * * 3092 * * * * 16 0 * * * * * * 2981 0 0 T 17 * * * * * * * * * * * * * * * * 244 2686 * * 17 0 * * * * * * 2981 0 0 V 18 * * * * * * * 976 * * * * * * * * * 1024 * * 18 0 * * * * * * 2981 0 0 V 19 * * * * * * * 2835 * 2041 3386 * * * * * * 940 * * 19 0 * * * * * * 2981 0 0 V 20 * * * * * * * * * * * * * * * * * 0 * * 20 0 * * * * * * 2981 0 0 N 21 * * * * * * 1875 * * * * 2308 * * 3415 1212 * * * * 21 0 * * * * * * 2981 0 0 L 22 * * * * * * * 1384 * 1749 * * * * * 3209 * 2244 * * 22 180 3092 * 1000 1000 * * 2981 1000 0 Q 23 2835 3386 2308 2686 * * * * 3511 * * * * 2308 * 3092 * * * * 23 325 * 2308 * * * * 2981 0 0 S 24 * * * * * 2580 * * * * * 2468 * * * 617 * * * * 24 479 * 1822 * * * 0 2722 0 1510 P 25 2280 * * * * * * * * * * * 1548 * * 2291 2014 * * * 25 0 * * * * 1916 444 2369 0 2116 T 26 * * 2190 * * 2711 * * * * * * * * * 2858 1028 * * * 26 0 * * * * * 0 2428 0 1910 L 27 * * * * 2190 2430 * * * 1176 * * 2711 * * * * * * * 27 0 * * * * 1595 580 2428 0 1910 E 28 * * 2696 919 * * * * * * * * 1659 * * * * * * * 28 0 * * * * 1000 1000 2553 0 1587 E 29 * * 3150 784 * * * * * 2453 * * * 3012 * * * * * * 29 172 * 3150 * * 0 * 2727 0 1000 K 30 * * 2949 * * 3213 * * 1430 * * 1860 * * * * 3107 * * * 30 263 * 2585 * * * 0 2902 0 1000 N 31 * * * * * 1254 * * * * * 1320 2473 * * * * * * * 31 0 * * * * 982 1018 2567 0 1678 E 32 * * 3012 2083 3173 * * * * * * * 2820 * 2579 3219 * * * 3150 32 220 2820 * 1000 1000 * 0 2653 1000 1000 F 33 * * * * 445 3012 * * * * * * * * * * * * * 2820 33 0 * * * * 0 * 2653 0 1000 P 34 * * 604 * * * * * * * * * 1548 * * * * * * * 34 0 * * * * * * 2981 0 0 E 35 * * 1851 779 * * * * * * * * 2835 * * * * * * * 35 0 * * * * * * 2981 0 0 D 36 2447 * 2308 * * 3209 3415 * * * * 3092 * 2835 * 2686 * * * * 36 0 * * * * * * 2981 0 0 L 37 * * * * 2005 * * 3209 * 1376 2835 * * * * * * 3092 * * 37 165 3209 * 0 * * * 2981 1000 0 R 38 * * * * 2835 * * 2447 2686 3415 3092 * * * 2308 * * 3209 * * 38 0 * * * * * * 2981 0 0 T 39 * * 2447 * * * * * * * * 2686 2835 * * 1647 2308 * * * 39 0 * * * * * * 2981 0 0 E 40 2244 * * 1019 * * * 2686 * * * * 2835 * * * * * * * 40 0 * * * * * * 2981 0 0 L 41 * * * * * * * 2835 * 505 2686 * * * * * * * * * 41 0 * * * * * * 2981 0 0 M 42 * * * * * * 2835 3092 * 1162 2308 * * * * * * 3415 * * 42 0 * * * * * * 2981 0 0 Q 43 * * 3386 1653 * * 3415 * * * * * * 1414 * * 3092 * * * 43 0 * * * * * * 2981 0 0 T 44 3415 * * 3092 * 2686 * * 2085 * * * * 3511 * * 2308 3209 * * 44 0 * * * * * * 2981 0 0 L 45 * 3843 * * 1403 * * * * 857 * * * * * * * * * * 45 0 * * * * * * 3386 0 0 G 46 3858 * * 3545 * 1268 * * 3077 * * * * * * 2048 3843 * * * 46 0 * * * * * * 3386 0 0 S 47 * * * 2410 * * * * 3662 * * 2347 3545 3363 * 1501 * * * * 47 0 * * * * * * 3386 0 0 Y 48 * 3545 2773 * 1402 * * * * 3077 3662 * * 3363 * * * * * 3399 48 0 * * * * * * 3386 0 0 G 49 * * * * * 0 * * * * * * * * * * * * * * 49 182 3077 * 0 * * * 3386 1000 0 T 50 * * 3545 1219 * * * * 3013 * * * 3363 3077 * * 2786 * * * 50 0 * * * * * * 3386 0 0 I 51 3545 * * * * * * 1895 * * * * * * * * * 632 * * 51 0 * * * * * * 3386 0 0 V 52 * * * * 3705 * * 2851 * 3013 * * * 3077 * * 3662 1110 * * 52 0 * * * * * * 3386 0 0 L 53 3363 * * * * 2773 * * * 661 * 3013 * * * * * * * * 53 0 * * * * * * 3386 0 0 V 54 3013 * * * * * * 2291 * * * * * * * 3077 * 854 * * 54 0 * * * * * * 3386 0 0 R 55 * * * * * * * * 3077 * * * * * 182 * * * * * 55 0 * * * * * * 3386 0 0 I 56 * * * * 1631 * * 1779 * * * * * * * * * 2451 * 2301 56 0 * * * * * * 3386 0 0 N 57 * * 3077 * 3013 * 3363 * * * * 1779 * * * * * 1438 * * 57 0 * * * * * * 3386 0 0 Q 58 2104 * 2292 2200 * 3705 * * * * * * * 2786 * * 3013 * * * 58 0 * * * * * * 3386 0 0 G 59 * * 1879 2177 * 1924 * * * * * * * 3705 3363 3843 * * * * 59 0 * * * * * * 3386 0 0 Q 60 * * 3077 3545 * * 3013 * 2851 * 3928 2773 * 2786 * 3363 3662 * * * 60 0 * * * * * * 3386 0 0 M 61 2177 2773 * * * * * 3545 * 2440 1463 * * * * * * * * * 61 0 * * * * * * 3386 0 0 L 62 * * * 3013 * * * 3545 * 3399 4317 * * * * * * * 632 * 62 0 * * * * * * 3386 0 0 V 63 * * * * * * * 1363 * * * * * * * * * 710 * * 63 0 * * * * * * 3386 0 0 T 64 * * * 2038 * * * * * * * * * * * * 648 3077 * * 64 0 * * * * * * 3386 0 0 F 65 * * * * 401 * * * * 3077 * * * * * * * * * 3013 65 0 * * * * * * 3386 0 0 A 66 1364 * 3545 3013 * * * * * 2851 * 3077 * * 3662 3928 * * * * 66 0 * * * * * * 3386 0 0 D 67 * * 1048 1868 * * * * * * * 3013 * * * 3077 * * * * 67 0 * * * * * * 3386 0 0 S 68 3843 * 3363 * * 710 * * * * * * * * * 2786 * 3705 * * 68 0 * * * * * * 3386 0 0 H 69 2038 * * 2340 * * 3399 * * * * * * 3928 1945 3858 * * * 3843 69 0 * * * * * * 3386 0 0 S 70 * * * * * 2773 * * * * 3077 * * * * 444 * * * * 70 0 * * * * * * 3386 0 0 A 71 147 * * * * * * * * * * * * * * * 3363 * * * 71 0 * * * * * * 3386 0 0 L 72 3013 * * * * * * 3843 * 661 2524 * * * * * * * * * 72 0 * * * * * * 3386 0 0 S 73 1510 * * * * * * * 3545 * * 1879 * * * 1779 * * * * 73 0 * * * * * * 3386 0 0 V 74 347 * * * * * * * * * * * * * * * * 2225 * * 74 0 * * * * * * 3386 0 0 L 75 * * * * * * * 3928 * 226 * * * * * 3662 * * * * 75 0 * * * * * * 3386 0 0 D 76 3843 * 3399 3545 * 4317 * * 3013 * * 3363 * 3928 3705 1573 * * * * 76 0 * * * * * * 3386 0 0 V 77 * * * * * * * 3013 2150 1369 3077 * * * * * * 2786 * * 77 0 * * * * * * 3386 0 0 D 78 * * 755 * * * * * 2301 * * 3858 * * * 2885 * * * * 78 0 * * * * * * 3386 0 0 G 79 3843 * * * * 620 * * * * * 3705 * 3013 * 3662 * * * * 79 0 * * * * * * 3386 0 0 M 80 * * * * * * * 2301 2693 3077 2786 * * * * 3843 2238 3363 * * 80 0 * * * * * * 3386 0 0 K 81 * * * 1831 * * * * 1518 * * * * 3662 * 3013 2583 * * * 81 0 * * * * * * 3386 0 0 V 82 * * * * * * * 1608 * 3858 * * * * * 2773 3363 1476 * * 82 0 * * * * * * 3386 0 0 K 83 * 3662 3928 * * 1466 * * 2786 2851 * * * * * 3545 * * * 3013 83 0 * * * * * * 3386 0 0 G 84 * * * * * 309 * * * * * 2374 * * * * * * * * 84 0 * * * * * * 3386 0 0 R 85 * * * * * * 1410 * 2329 * * * * * 1929 * * * * 2625 85 0 * * * * * * 3169 0 0 A 86 2503 * * * * * 2518 * * * * 3167 * * 3468 * 1502 3406 * * 86 0 * * * * * * 3169 0 0 V 87 3257 * * * * * * 2469 * 1159 * * * * * * * 1906 * * 87 0 * * * * * * 3169 0 0 K 88 3468 * 3406 * * * * 2625 1831 * * * * * 1807 * 3535 * * * 88 0 * * * * * * 3169 0 0 I 89 * * * * * * * 856 * 2625 * * * * * * * 1809 * * 89 0 * * * * * * 3169 0 0 S 90 3169 * * * * * * * * * * * * * 1854 1732 1684 * * * 90 0 * * * * * * 2868 0 0 G 91 1116 * * * * 3212 * * * 2199 * * 2231 * * * * * * * 91 0 * * * * * * 2625 0 0 P 92 * * * * * * * * 814 * * * 2749 * * 1825 * * * * 92 0 * * * * * * 2140 0 0 S 93 * * * * * * * * 1825 * * * * * * 1212 1806 * * * 93 0 * * * * * * 2140 0 0 S 94 * * * * * * * * 2835 * * * 1822 * * 2749 1223 * * * 94 0 * * * * * * 2140 0 0 G 95 * * 1286 * * 761 * * * * * * * * * * * * * * 95 0 * * 0 * * * 1608 0 0 //