HHsearch 1.5 NAME d1r5pa_ FAM FILE d1r5pa_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1r5pa_.a3m DATE Tue Mar 9 03:01:30 2010 LENG 90 match states, 90 columns in multiple alignment FILT 58 out of 62 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.4588 1.7022 SEQ >ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHHHHHHTTSEEEEEEETTTSCSCCTTCCCBCHHHHGGGSCHHHHHHHHHHHHTSCCEEEEEEEECC >sa_dssp CDBAAAAADBDCEDADECBEDADECADEDCEDECCCDDBBCEEEDEDDEECDDDDBEECBEEBBECADEBACCACEECEBBDAABCCECE >ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHCCEEEEEHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCC >ss_conf 969999982899669999999999999753994599999813586677656936701124208998527972048978999960855579 >Consensus tyxLxLyVxGxtxxSxxaixnlxxicexxlxgxyxLeVIDvxxxPxlAexxxIvATPtLikxxPxPxrrliGDLsdxxxVLxxLxlxpxx >d1r5pa_ TYVLKLYVAGNTPNSVRALKTLKNILEQEFQGIYALKVIDVLKNPQLAEEDKILATPTLSKILPPPVRKIIGDLSDRERVLIGLDLLYEE >UniRef50_A3IWD4(4-91:98) Circadian clock protein KaiB n=2 Tax=Cyanothece RepID=A3IWD4_9CHRO E=5e-10 s/c=0.74 id=41% cov=98% TYSLKLYIASNTVNSELAMNTLTEICHDDLNDDCQIEIIDILENFEEAETEKIVAIPTlLLESAYSSQRRLVGNLSDRKQVLQEIKML--- >UniRef50_D2L710(5-89:90) Circadian clock protein KaiB n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L710_9DELT E=9e-20 s/c=1.15 id=40% cov=93% ---LTLYLSGTDPGSRRMTAALRAWCERELGGDYRLNVLDISDWPKRAENLPILATPALV--LESPGRITVGDLSDIPKTMAALGLAP-- >UniRef50_B5IIP9(21-84:413) PAS fold family n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IIP9_9CHRO E=1e-10 s/c=1.05 id=31% cov=72% -WIWTLFICGGAPASAAALCRLRHLCDQEGSTRVELRVVDVSSDPEPALRAGVRAIPSLVAD-PLP------------------------ >UniRef50_O27167(9-84:84) Conserved protein n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O27167_METTH E=1e-14 s/c=1.06 id=42% cov=86% -----LYVTGDSL-SERALENLMDVIDD----RVELEVVNVLEKPWLARERGIIAIPTLERLNPGPERRVIGDLSDADALRRFLGI---- >UniRef50_Q21SH6(135-216:229) Response regulator receiver domain protein n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21SH6_RHOFD E=2e-13 s/c=0.94 id=37% cov=91% ---LTLYVVSVNPEIQKVVDQLSNVLAATYrAGFWVLNVVEVLGMPEKALEKDVFATPMLVREVPEPVLKLLGDLSRMHSVLSAI------ >UniRef50_D0LT55(147-233:237) Response regulator receiver protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LT55_HALO1 E=5e-12 s/c=0.83 id=36% cov=93% ---LCLYLHSGTSASAAAETNLQNALADFDTTRLQLESIDLARSPRAAhPEDKVVFTPTLVRRGPGSRLALVGDLGDRallDSVLLAAGL---- >UniRef50_A0YQ75(25-110:110) Thiol-disulfide isomerase n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YQ75_9CYAN E=2e-25 s/c=1.35 id=40% cov=97% -YTLRLYIAGTGLQSIVALKNLQKICDEYLPGKHELEVIDIYEQPERLQTENIVAIPTLLKVFPKPYQRIIGNFSDKQKVLTALGLI--- >UniRef50_UPI0001C16E4E(26-94:175) Adaptive-response sensory-kinase sasA n=1 Tax=Raphidiopsis brookii D9 RepID=UPI0001C16E4E E=4e-13 s/c=1.10 id=36% cov=77% ---LLLFVDGR-PKSRQQVQRICAYLQDlEVDYSFDLQIIDVREEPYLAEHFRLVATPALVKIHPEPQQTLAG------------------ >UniRef50_Q7U871(14-82:383) Adaptive-response sensory-kinase sasA n=26 Tax=Cyanobacteria RepID=SASA_SYNPX E=1e-09 s/c=0.93 id=29% cov=76% -----LLVAARHHLSGPDLRSVVHYLERDDVGfQVTLQLADPSQQPELLELHRLVITPALIKLSPAPKQVFAG------------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * 3036 188 * * * 1 0 * * * * * * 2807 0 0 Y 2 * * * * 3924 * 3948 4565 * * * * * * * * * 4315 3226 578 2 0 * * * * * * 3396 0 0 V 3 * 5113 * * * * 3506 3282 4976 2347 * * * 5411 * 4214 5000 1173 * * 3 0 * * * * * * 3495 0 0 L 4 * * * * 3868 * * * * 154 * * * * * * * * 4944 * 4 0 * * * * * * 4122 0 0 K 5 * 4578 * * * 5969 5923 * 2749 3039 * * * 5778 1254 * 2450 5921 * 5769 5 0 * * * * * * 4122 0 0 L 6 * * * * * * * * * 0 * * * * * * * * * * 6 0 * * * * * * 4295 0 0 Y 7 * * 5442 * 1645 * * * * 4687 * * * * * * * * * 693 7 0 * * * * * * 4295 0 0 V 8 * * * * 5302 * * 2198 * 3467 * * * * * * * 586 * * 8 0 * * * * * * 4295 0 0 A 9 1302 4381 2741 * * * 4802 5696 * 5691 * * * 5092 5794 3232 3231 4012 * * 9 84 * 4152 * * * * 4295 0 0 G 10 4599 * 4534 * * 448 * * 4952 * * * * 5951 * 2898 * * * * 10 0 * * * * 0 * 4243 0 1397 N 11 4389 * 2829 4221 * 3966 3715 5969 5302 6559 5037 2731 * 3828 2933 5154 3074 4771 * * 11 67 * 4468 * * * * 4295 0 0 T 12 3786 * 4932 * * 4936 4631 * * * * 3373 * * 3432 2089 1331 * * * 12 0 * * * * 0 * 4277 0 1285 P 13 4886 * 6114 * 6132 5967 4176 * 5068 2787 * * 1103 5118 * 3605 5353 3468 * * 13 28 * 5688 * * * * 4373 0 0 N 14 2867 * * 4278 * 4079 5162 5690 2177 4077 * 2758 * 5923 2556 4473 6035 5066 * * 14 0 * * * * 0 * 4364 0 1000 S 15 3937 * * * * * * 4806 5385 * * * * * * 304 3941 * * * 15 0 * * * * * * 4380 0 0 V 16 3374 * * 2557 * 4227 * 4093 4925 3679 4682 5685 * 2715 2555 6370 4087 4089 * * 16 0 * * * * * * 4380 0 0 R 17 3238 * 5371 4215 * * 4014 5862 4126 5192 5989 3985 4705 3166 1706 * 4293 4267 6139 * 17 17 * 6421 * * * * 4380 0 0 A 18 732 * 4050 * * * * 3254 * * 4979 * * 4072 * 4651 4396 4206 * * 18 0 * * * * * 0 4386 0 1000 L 19 * * * 4918 5215 * * 1437 * 1704 4584 * * * * * 4979 2393 * * 19 36 * 5360 * * * 0 4386 0 1000 K 20 2835 5390 4717 2373 5967 * * 4921 3226 * * 3686 * 3146 2459 5347 4266 * * * 20 0 * * * * 0 * 4356 0 1371 T 21 3646 * * 4149 * * * * 5985 * 6216 1212 * 2998 3760 3316 3470 6238 * * 21 0 * * * * * * 4380 0 0 L 22 5076 * * * * * * 2025 * 921 * * * * 5211 * * 2561 * * 22 0 * * * * * * 4380 0 0 K 23 * 5820 5743 3871 * 5371 4010 * 2231 5211 5725 * * 3069 1861 4067 5192 4227 * 6031 23 37 5311 * 2000 415 * * 4380 1000 0 N 24 3503 * 3766 4049 * * 3062 * 2912 * * 3030 * 3499 2144 3503 * * * * 24 0 * * * * * * 4380 0 0 I 25 4926 5371 * * 4956 * 5796 1209 * 2207 * * * * * * * 3483 4986 3030 25 27 * 5743 * * * * 4380 0 0 L 26 * 883 * * 6056 * * 4547 * 1424 5192 * * * * * * * * * 26 40 * 5176 * * 0 * 4363 0 1000 E 27 2800 * 2831 993 * * 5175 * * * * * * 3798 4736 4292 5300 * * * 27 59 6259 5217 1000 1000 0 * 4382 1000 1317 Q 28 3478 * 2770 2151 * * 5715 * 5278 5499 * 4101 * 3027 2614 4000 3949 * * * 28 159 4118 4425 0 * * 0 4347 2083 1000 E 29 3961 * 2941 2358 4831 * 2999 * 4785 3925 * 6035 * * 4996 4016 4747 5033 * 2539 29 26 5785 * 1585 585 1585 585 4256 1000 1998 F 30 4804 * 3776 * 3196 5112 * 6191 4630 736 * * * * * * * 5754 * 3643 30 54 4769 * 0 * 956 1045 4276 1000 1650 Q 31 2651 * 3944 6406 * 2732 * * 3803 * * 3297 2313 4307 5300 4177 4219 4211 * * 31 0 * * * * * 0 4364 0 1000 G 32 6170 * 2720 6197 * 832 4425 * * * * 4719 5684 * * 5000 4135 4349 * 5801 32 156 3288 * 251 2645 0 * 4364 2163 1000 I 33 * * 3245 4223 4826 5260 3455 6697 4102 4422 5730 4794 3389 2904 2069 5854 * 4863 * * 33 35 5393 * 0 * * * 4391 1000 0 Y 34 * 2521 * * 4173 * 4212 4056 * 4931 * * * * * * * 3261 4826 1047 34 84 4148 * 1000 1000 * * 4391 1774 0 A 35 4739 * 2268 2002 * 5337 * * * * * 6042 * 2761 4347 4523 2501 4365 * * 35 0 * * * * * * 4391 0 0 L 36 * * * * * * * 2679 * 352 * * * * * * * 4043 * * 36 0 * * * * * * 4391 0 0 K 37 * * * 884 * * 5409 * 3191 * * 3918 * 2381 4746 5081 * * * * 37 0 * * * * * * 4391 0 0 V 38 * * * * * * * 1321 * 4731 * * * * * 4931 * 918 * * 38 0 * * * * * * 4391 0 0 I 39 4731 * * * * * * 862 * 4193 * * * * * * 6097 1626 * 5730 39 0 * * * * * * 4391 0 0 D 40 * * 263 3519 * * * * * * * 4731 5806 5393 * * * * * * 40 0 * * * * * * 4391 0 0 V 41 * * * * * * * 1555 * 2561 * * 4731 * * * * 1144 * * 41 0 * * * * * * 4391 0 0 L 42 4275 5724 5081 5806 6001 6193 6154 4227 6236 1916 6189 5337 * * 4125 2569 4069 * * 2448 42 0 * * * * * * 4391 0 0 K 43 5260 * 3871 1979 * 4826 * * 2497 4980 * 5337 * 1823 4006 4714 * * * * 43 0 * * * * * * 4391 0 0 N 44 * * 3360 5115 * * 2443 * 4636 * 4826 2743 * 1652 4833 3628 * * 5017 * 44 0 * * * * * * 4391 0 0 P 45 6101 * * * 5254 * * * 4394 * * * 209 * 5823 6112 * 6097 * * 45 0 * * * * * * 4391 0 0 Q 46 4915 * 4014 1606 * 6112 4258 6506 5017 * 6154 * * 2246 4440 4755 5823 6075 5735 3202 46 0 * * * * * * 4391 0 0 L 47 4417 * * 3594 6075 * * 4876 3888 982 5890 * 5432 4063 3408 * 5081 6235 * 6506 47 0 * * * * * * 4391 0 0 A 48 371 * * * * * * * * 3534 * 5823 * * * 6075 * 3213 * * 48 48 4931 * 0 * * * 4391 1000 0 E 49 5286 * * 659 * 6112 * 6246 4651 4097 * * 4309 5963 3507 * 6101 4440 * * 49 0 * * * * * * 4391 0 0 E 50 4072 * 3735 2138 * 6189 3150 4954 4529 4249 * 3633 * 4443 2796 6147 4141 * * 4560 50 0 * * * * * * 4391 0 0 D 51 4001 * 1953 2236 3065 6506 3664 * 4826 5017 * 5033 * 4313 5735 6092 * * * 3696 51 0 * * * * * * 4391 0 0 K 52 5081 * 4826 * * 3002 4925 * 2305 5823 * 3772 5017 2276 2181 5241 * * * * 52 0 * * * * * * 4391 0 0 I 53 * * * * * * * 970 * 2111 * * * * * * * 1954 * * 53 0 * * * * * * 4391 0 0 L 54 * * * * 3701 * * 3711 * 1832 6042 * * 5944 5432 4010 * 1155 * * 54 0 * * * * * * 4391 0 0 A 55 219 * * * 4204 * * 4731 * * * * * * * * * 4354 * * 55 0 * * * * * * 4391 0 0 T 56 3213 * * * * * * 2991 * 4503 * * * * * * 525 5201 * * 56 0 * * * * * * 4391 0 0 P 57 * * * * * * * * * * * * 0 * * * * * * * 57 0 * * * * * * 4398 0 0 T 58 2160 * * * * * * 5255 * 4933 4829 * * * * 4416 699 5695 * * 58 38 5257 * 0 * * * 4398 1000 0 L 59 * * * * * * * 6896 * 41 * * * * * * * 5695 * * 59 0 * * * * * * 4398 0 0 S 60 4645 * * 5742 * * * 1396 * 3492 5075 * * * * 4482 5895 1391 * * 60 45 * 5019 * * * * 4398 0 0 K 61 5417 * 5214 5202 * * * 5682 785 * * * * * 1631 * * * * * 61 44 * 5052 * * * 0 4350 0 1000 I 62 5740 * 4465 2459 * * * 2519 3117 2609 * * * 4857 3667 5147 6184 2783 * * 62 35 * 5376 * * 965 1036 4305 0 1513 L 63 3803 * 6160 4137 5914 3810 4506 * * 1540 * 5689 * 4408 5352 2531 * 4747 4380 4942 63 0 * * * * 932 1072 4317 0 1580 P 64 * * * 4123 * * * * * * * * 195 * * 6080 5204 * * 5200 64 0 * * * * * 0 4354 0 1000 P 65 3611 * 5284 2515 * 2806 6027 * 5938 2555 * * 2427 4962 5091 4085 4672 5201 * * 65 0 * * * * 0 * 4354 0 1000 P 66 * * * * * 5085 * * * * * * 204 * * 3289 * * * * 66 0 * * * * * * 4398 0 0 V 67 4403 * * 3643 * 5013 * 4557 3208 2896 6132 * 4441 4155 2600 5068 5041 2524 * 4598 67 0 * * * * * * 4363 0 0 R 68 * * * * * * 4249 * 4045 3823 5724 * * 1923 958 * 5730 * * * 68 0 * * * * * * 4363 0 0 K 69 4232 * * * * * * 3204 2530 * * * * * 1030 * 3734 3321 * * 69 0 * * * * * * 4363 0 0 I 70 * * * * 3255 * * 1553 * 1106 * * * * * * 5013 4088 * * 70 0 * * * * * * 4363 0 0 I 71 2114 * * * * * * 1075 * 4290 * * * * * 4928 6004 2359 * * 71 0 * * * * * * 4363 0 0 G 72 * * * * * 0 * * * * * * * * * * * * * * 72 67 4459 * 0 * * * 4363 1529 0 D 73 * * 272 3975 * * * * * * * 3951 * 5367 * 5707 * * * * 73 0 * * * * * * 3998 0 0 L 74 * * * * 3704 * * 4959 * 375 3059 * * * * * * * * * 74 34 5428 * 1000 1000 * * 3998 1000 0 S 75 3677 * 4477 * * 4640 * 5316 * 5750 * 4596 * * * 545 3911 * * * 75 0 * * * * * * 3998 0 0 D 76 * * 598 5498 * 6617 4459 4825 * * * 3255 * 5000 3892 5444 * * * * 76 0 * * * * * * 4004 0 0 R 77 5137 * * 3395 * * 4654 3716 2997 5498 4384 * * 6235 2200 4247 2397 3865 5412 * 77 68 4446 * 1585 585 * * 3899 1000 0 E 78 3972 * 2569 1449 * 5636 4384 * 3931 * * * 3277 3610 4135 * * * * 5274 78 0 * * * * * * 3899 0 0 R 79 5137 * * 4757 * * * * 1567 * * 5498 * 2931 1785 3140 5634 5633 * * 79 0 * * * * * * 3899 0 0 V 80 4757 * * * * * * 3135 * 3379 * * * * * * 4551 493 * * 80 0 * * * * * * 3899 0 0 L 81 5388 5217 * * * * * 4131 5329 367 3983 * * * 5119 * * * * * 81 0 * * * * * * 3861 0 0 I 82 3427 * 5574 3749 * * * 2686 * 3335 5307 4076 * 3514 2790 3811 5502 2973 * 5655 82 0 * * * * * * 3826 0 0 G 83 1982 5301 5583 4758 5066 1236 * 3816 * 4156 5332 5742 * * * * * * * 4693 83 0 * * * * * * 3826 0 0 L 84 4420 * * * * * * 3540 * 248 5307 * * * * * * * * * 84 37 * 5304 * * * * 3826 0 0 D 85 5427 * 1499 3801 * 1694 * * 4033 * * 2870 * 5859 * 5214 * * * * 85 0 * * * * 0 * 3643 0 1000 L 86 * * * * * * * 1501 * 1042 3536 * * * * * * 4455 * 5090 86 0 * * * * * * 3603 0 0 L 87 1850 * * * 4133 * * 4299 * 1900 4261 4190 * 4336 4721 * * 2714 * * 87 0 * * * * * * 3194 0 0 Y 88 * * * 3710 * * 3854 * * * * * 465 * * * * * * 2947 88 0 * * * * * * 2915 0 0 E 89 * * 1296 1478 * * * * * * * 2959 * 3247 * * * * * * 89 0 * * * * * * 2493 0 0 E 90 * * 1887 1084 * * * * 1955 * * * * * * * * * * * 90 0 * * 0 * * * 1827 0 0 //