HHsearch 1.5 NAME d1q1ha_ FAM FILE d1q1ha_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1q1ha_.a3m DATE Wed Mar 10 04:42:12 2010 LENG 85 match states, 85 columns in multiple alignment FILT 26 out of 30 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.4 EVD 0.4230 0.7126 SEQ >ss_dssp CCTTTTHHHHHHHTTSCSTTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEECCCCCEEEEECTHHHHC >sa_dssp EEEBDEEABEDADEECDEEBBDAACCABDDEECABCECABEEDEDEDDDADEBADDADEDDBADDDDDEEEEDCCCBECBBEEDE >ss_pred CCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEHHHCC >ss_conf 9760358999999951844799999984078724799999885898789999999998579027874038908999983076379 >Consensus mxxxedxlixxxxxixGexgxxVxxxLxxxxxExtDEeiAexxgiklNxVRkxLyxLyexxLaxyrrxrxgWxtYxWxxxxexin >d1q1ha_ MVNAEDLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRSGWFIYYWKPNIDQIN >UniRef50_A1RY32(1-85:178) Transcription factor E n=1 Tax=Thermofilum pendens Hrk 5 RepID=TFE_THEPD E=8e-18 s/c=1.08 id=34% cov=98% -MNAHEALAEIAGKMFGDNAKKVM-MVLASNVEVSDEDLAKDLKMDPPELRKLLNDLFEARLVKYRRARDeniGWYKYYWRITDEPI- >UniRef50_A0RYF4(6-87:171) Transcription factor E n=5 Tax=Thaumarchaeota RepID=TFE_CENSY E=8e-18 s/c=1.12 id=39% cov=94% ----EDPFIRIAVMIGGDEYLKVARSLL-KAEDATDEEIASSTGLRINMVRKVLYDLFGKSLISgvrVKDERKGWFVYRWRSRREEV- >UniRef50_A2BLW2(1-87:173) Transcription factor E n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=TFE_HYPBU E=7e-16 s/c=0.98 id=28% cov=92% -----EKLFTFVEKLVDSDARKVFEALYEAGEELSEADIATKTGLKLNVVRRALNSMAEKGLVVYRRQKHPQknkLVFYWRINYE--- >UniRef50_A4G0F7(3-87:175) Transcription factor E n=7 Tax=Methanococcus RepID=TFE_METM5 E=7e-15 s/c=0.96 id=34% cov=94% ----ENPLIqQVLFEIMDEDvvGFDVLSVLINTN-EVTDDEISRQLDVKLNNIRRILYKLYEARLVDYNREKdeeTNWYTYTWKPSLEKV- >UniRef50_A5UKV8(2-85:173) Transcription factor E n=2 Tax=Methanobrevibacter smithii RepID=TFE_METS3 E=9e-14 s/c=0.93 id=30% cov=93% ----DDPLVKslLTNVVEDESNLPIVQALIDGVE--TDEAIAEKTEIKLNIVRKILYKLYDMGLATYKRSKDPetqWFTYSWKFEEQEV- >UniRef50_O29501(11-89:177) Transcription factor E n=3 Tax=Archaeoglobaceae RepID=TFE_ARCFU E=2e-12 s/c=0.93 id=37% cov=88% ---------ELLNELVGRAAGEVGLILFSLGieGEFTDDQLSLELGIEINEIRKALFALYEIGLADYVRRRddeTGWMEYYWRINYDK-- >UniRef50_D2EFS9(47-128:215) Transcription factor TFIIE, alpha subunit n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EFS9_9EURY E=1e-10 s/c=0.83 id=36% cov=79% -------------DIAGEKGLEVFEFLIANG-EMEENFLAKKLKFeKANAIRKFLYKLYNKNLVSYRKVRKNnkaWYTYFWSAN----- >UniRef50_Q64DJ0(1-87:167) Transcription initiation factor IIE alpha subunit n=3 Tax=environmental samples RepID=Q64DJ0_9ARCH E=2e-16 s/c=1.00 id=29% cov=99% MIDIDDPVVhQYLVKIIGADGVEILEKLP--DGEIVDEVVAEEIEMDINVIRKTLFKLHENRLSGYRRERnpdTGWLTYHWTLYPENID >UniRef50_A8ABJ9(8-89:173) Transcription factor E n=1 Tax=Ignicoccus hospitalis KIN4/I RepID=TFE_IGNH4 E=2e-13 s/c=0.93 id=30% cov=94% -----EELLEFVRSVAGEDGVRVFKELM-RYEDISEEQLTETLGMKPNDVRRALYKLERYGLVrnyKIRNENDGTYIYYWYVDRETLN # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1955 0 0 V 2 * * * * * * * 2121 * * 1938 * * * * * 2035 1916 * * 2 0 * * * * * * 2376 0 0 N 3 * * 1077 * * * * * * * * 927 * * * * * * * * 3 0 * * * * * * 2376 0 0 A 4 927 * * * * * * 2121 * * * * * * * 2035 * * * * 4 0 * * * * * * 2376 0 0 E 5 * * 2200 927 * * 2826 * * * * 3117 * * * * * * * * 5 0 * * * * * * 3153 0 0 D 6 * * 755 1678 * * * * * * * 3399 * * * * * * * * 6 0 * * * * * * 3467 0 0 L 7 2614 * * 3408 * * * * 3321 3493 * * 1060 * * 3758 * * * * 7 0 * * * * * * 3473 0 0 F 8 * * * * 2153 * * * * 854 * * * * * * * 2173 * * 8 0 * * * * * * 3477 0 0 I 9 3402 * * * 3351 * * 1726 * 2302 * * * * * * * 1725 * * 9 256 2620 * 0 * * * 3477 1510 0 N 10 * * 4314 1743 * * * * 2863 * * 3701 * 2280 2843 * 3455 * * * 10 325 2311 * 414 2004 * * 3549 1814 0 L 11 * * * * 2494 * * 1961 * 2190 * * * * * * * 2834 * 2278 11 0 * * * * * * 3549 0 0 A 12 1318 * * * * * * * * 1509 * * * * * * 3834 2494 * * 12 0 * * * * * * 3549 0 0 K 13 * * * 3577 3904 2867 4354 * 3904 4070 * 2936 * 3373 2426 * * 3014 * * 13 0 * * * * * * 3571 0 0 S 14 * * 3279 2266 * * * * 1554 4166 4212 * * 4253 * 2927 * 4183 * * 14 0 * * * * * * 3597 0 0 L 15 * * * * * * * 1364 * 1641 2582 * * * * * * 3013 * * 15 0 * * * * * * 3629 0 0 L 16 2998 * * 4388 4063 2093 * 2360 * 4253 4435 * * * * * * 2063 * * 16 0 * * * * * * 3601 0 0 G 17 * * 2089 * * 386 * * * * * * * * * * * * * * 17 0 * * * * * * 3601 0 0 D 18 4261 * 1909 940 * * * * * * * * 4832 * 4135 3870 * * * * 18 0 * * * * * * 3612 0 0 D 19 4135 * 1623 1486 * * * * 3444 * * 4101 * * * 4556 3862 * * * 19 64 4519 * 1000 1000 * * 3612 1000 0 V 20 1803 * * * * 923 * * * * * 4556 * * * * * 4330 * 3411 20 0 * * * * * * 3612 0 0 I 21 * * * * 3152 4135 * 2171 4101 2483 3011 * * * 3870 * * 2483 * * 21 0 * * * * * * 3612 0 0 D 22 4693 * 3422 1385 * * * * 2524 * * 4417 3085 * 2768 * * * * * 22 0 * * * * * * 3612 0 0 V 23 * * * * * * * 2495 * 3718 4537 * * * * * * 507 * * 23 0 * * * * * * 3612 0 0 L 24 2953 * * * 2403 4135 * 3052 * 2189 3203 * * * * * * 2504 * * 24 87 * 4101 * * * * 3612 0 0 R 25 4762 * 4727 1520 * 4117 * * 2185 4041 * * * 4502 2758 4430 * * * * 25 0 * * * * 0 * 3533 0 1000 I 26 2052 4637 * 3965 4141 * * 3229 3461 * 4101 4537 * * 4563 4405 3364 3152 * * 26 116 * 3691 * * * * 3612 0 0 L 27 * * * * * * * * * 403 2966 * * * * * * 3108 * * 27 105 * 3830 * * 979 1021 3576 0 1407 L 28 * * * * 3134 * * 2332 * 1733 3124 * 2326 * * * * * * 3785 28 382 * 2104 * * 0 * 3612 0 1635 D 29 2752 * 2637 1256 * * * * 4243 * * 4226 3355 * * 3878 * * * * 29 141 * 3427 * * 453 1893 3324 0 2316 K 30 3789 * * * * 2693 * * 1583 4028 * 4035 4616 * 3067 3985 3416 * * * 30 237 4431 3246 1000 1000 1516 621 3574 1000 1844 G 31 4250 * 2292 * * 1564 4260 * 4804 * 4656 2691 * * * * * 4314 * 3789 31 416 4005 2411 1000 1000 984 1016 3550 1000 1908 T 32 * * * 1406 * 1634 * * 3294 * * * * 4286 * * 3882 3654 * * 32 75 * 4302 * * 0 * 3433 0 2326 E 33 * * 3117 393 * * 4429 * 4802 * * * * * * * * * * 4608 33 0 * * * * * 0 3442 0 1000 M 34 2348 * * * 4418 * * 2574 * 3933 3248 * * * 4943 * 5071 1641 * 4821 34 0 * * * * 0 * 3442 0 1000 T 35 * * * 4123 * * * * * * * * * * * 2110 596 4341 * * 35 0 * * * * * * 3400 0 0 D 36 * * 381 2108 * * * * * * * * * * * * * * * * 36 0 * * * * * * 3400 0 0 E 37 4125 * 3705 306 * * * * * * * 4123 * * * * * * * * 37 0 * * * * * * 3400 0 0 E 38 5348 * 3255 1074 4123 * 5167 * * * * * * 2262 * * * 4341 * 4242 38 0 * * * * * * 3400 0 0 I 39 * * * * * * * 886 * 1395 * * * * * * * 3667 * * 39 0 * * * * * * 3400 0 0 A 40 439 * * * * * * * * * * * * * * 2749 3135 * * * 40 0 * * * * * * 3400 0 0 N 41 * * 4242 1011 * * * * 2635 4488 * 4583 * 5087 3740 4574 4125 * * * 41 0 * * * * * * 3400 0 0 Q 42 2694 * 4398 2505 4604 * * 4127 2242 3284 * * * 3760 * 4574 4036 4935 * * 42 0 * * * * * * 3400 0 0 L 43 * * * * * * * 3510 * 1254 * * * * * 3207 1378 * * * 43 0 * * * * * * 3400 0 0 N 44 * * 3108 2980 * 877 * * 2863 * * 4583 * 4893 * * * * * * 44 0 * * * * * * 3400 0 0 I 45 * 4701 * * 4123 * * 1505 * 2130 2665 * * * * * 4548 3026 * * 45 85 4123 * 0 * * * 3400 1000 0 K 46 * * 3370 3824 * * * * 795 * 4790 3391 * * 3366 5167 * * * * 46 0 * * * * * * 3400 0 0 V 47 4123 * * * * * * 2121 * 978 * * 3206 * * * * 3370 * * 47 0 * * * * * * 3400 0 0 N 48 * * * * * * * * * * * 136 4398 * * * 4548 * * * 48 0 * * * * * * 3400 0 0 D 49 2709 * 2958 3442 4743 * * 2305 * 5087 4574 4961 * * * 3924 3594 2895 * * 49 0 * * * * * * 3400 0 0 V 50 * * * * * * * 2239 * 4398 * * * * * * * 433 * * 50 0 * * * * * * 3400 0 0 R 51 * * * * * * * * * * * * * * 0 * * * * * 51 0 * * * * * * 3400 0 0 K 52 * * * * * * 4912 * 721 * * 4935 * * 1611 * * * * * 52 0 * * * * * * 3400 0 0 K 53 2404 * * * 4123 * * 1868 4583 3270 * * * * * 5167 2172 3561 * * 53 0 * * * * * * 3400 0 0 L 54 * * * * * * * * * 0 * * * * * * * * * * 54 0 * * * * * * 3400 0 0 N 55 * * * * 2680 * * * * * * 2327 * * * * * * * 634 55 0 * * * * * * 3400 0 0 L 56 3810 * 2938 * * * * 2792 1653 3846 5147 4912 * * 4893 3384 3729 * * * 56 0 * * * * * * 3400 0 0 L 57 * * * * 4743 * * * * 202 3419 * * * * * * * * * 57 0 * * * * * * 3400 0 0 E 58 4125 * * 3283 2938 * 4341 * * * * 3958 * 4242 * * * * * 881 58 0 * * * * * * 3400 0 0 E 59 * * 2028 998 * 2879 * * * * * 4123 * * 4036 * * * * * 59 0 * * * * * * 3400 0 0 Q 60 2350 * * 5147 * * 3415 4488 2674 * 3989 2445 * 4583 4604 * * 4743 * 3135 60 0 * * * * * * 3400 0 0 G 61 * * 5264 * * 1391 3881 * 5225 * * 3419 * * 1637 3589 * * * * 61 0 * * * * * * 3400 0 0 F 62 * * * * 4583 * * 3387 * 337 4743 * * * * * * 4893 * * 62 0 * * * * * * 3400 0 0 V 63 1115 * * * * * * 3589 * * * * * * * 4341 4242 1502 * * 63 91 4036 * 1585 585 * * 3400 1000 0 S 64 5138 * 2914 3719 * 4341 * 5167 2826 * 5087 3471 * * * 2064 3436 3419 * * 64 125 3589 * 1585 585 * * 3400 1324 0 Y 65 * 4790 * * 4185 * * 4036 * * * * * * * * * 3589 * 387 65 0 * * * * * * 3400 0 0 R 66 * * * * * * * * 2361 * * 3557 * * 647 * 4743 4488 * * 66 0 * * * * * * 3400 0 0 K 67 * * 3589 * * * * 4242 2971 * * 4036 * * 660 * 4548 * * * 67 0 * * * * * * 3400 0 0 T 68 4398 * 4701 1773 * * * 3409 3940 5264 * * * 4125 4488 3171 4583 2997 4153 * 68 0 * * * * * * 3400 0 0 R 69 * * * * * * * * 1186 * * 4036 * * 1001 * * * * * 69 762 1285 * 1527 615 * * 3400 2728 0 S 70 * * 1311 * * * 4125 * 3331 * * * * * 3846 3565 1804 * * * 70 310 2369 * 1585 585 * * 3400 2211 0 G 71 * * * * * 593 * * * * * 2779 2710 4701 * * * * * * 71 239 2709 * 1585 585 * * 3400 1820 0 W 72 * * * * * * * * * * * * * 4125 * * 4036 * 182 * 72 85 4125 * 1585 585 * * 3400 1000 0 F 73 * * * * 2217 * * 4548 * 1536 4488 * * * * * * * * 1503 73 0 * * * * * * 3400 0 0 I 74 * * * 4488 * * * 3283 4398 * * * * * * 3632 998 2832 * 3584 74 0 * * * * * * 3400 0 0 Y 75 * * * * 3182 * * * * * * * * * * * * * * 168 75 0 * * * * * * 3400 0 0 Y 76 * * 4701 4242 4123 * 4341 * * 2133 * * * * 3589 5348 3035 * * 1538 76 0 * * * * * * 3400 0 0 W 77 * * * * * * * * * * * * * * * * * * 0 * 77 0 * * * * * * 3400 0 0 K 78 * * * 4935 * * * * 1750 4034 * * * 4790 1616 4123 3730 * * 3135 78 0 * * * * * * 3400 0 0 P 79 3344 * * * 2302 * * 1962 * 2508 4912 * 2943 * * 4574 * 4036 * * 79 0 * * * * * * 3400 0 0 N 80 * * 2338 2732 * * * * * * * 1545 * 4583 3691 4934 3232 * * 4301 80 0 * * * * * * 3401 0 0 I 81 * * 3945 3521 * * * 3394 * 2179 4883 * 3350 * 2500 * * * * 2163 81 0 * * * * * * 3633 0 0 D 82 * * 1390 1066 * * * * * * * * * 4376 * 3428 * * * * 82 0 * * * * * * 3633 0 0 Q 83 * * 3970 2623 * * 4440 * 2076 * * 2244 3827 3021 * * 3541 * * * 83 0 * * * * * * 3318 0 0 I 84 * * * * * * * 1281 * 2451 3333 * * * * * * 1707 * * 84 0 * * * * * * 3411 0 0 N 85 * * 2009 * * * * * * * * 412 * * * * * * * * 85 0 * * 0 * * * 2240 0 0 //