HHsearch 1.5 NAME d1p9ga_ FAM FILE d1p9ga_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1p9ga_.a3m DATE Wed Mar 10 21:40:55 2010 LENG 40 match states, 40 columns in multiple alignment FILT 2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.3 EVD 0.5138 3.0586 SEQ >ss_dssp CGGGGTTCCSCTTCEEETTSCEECSHHHHSTTTEEECTTC >sa_dssp EADEDDEEBBEEDDAABDEBECBDDEEDCCEEDBECBDEC >ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEECC >ss_conf 9644277731155200310102586000368764002069 >Consensus tcaxrcxxpcxxgxccsxxxxcgxgxxycgagncxxqcrg >d1p9ga_ TCASRCPRPCNAGLCCSIYGYCGSGAAYCGAGNCRCQCRG >UniRef50_C9SDM9(61-97:891) Oviduct-specific glycoprotein n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SDM9_VERA1 E=7e-11 s/c=1.85 id=57% cov=92% --ALRCDDgPCIDGSCCSKEKICGYGPSYCGAGNCTSQC-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * * 0 * * * 1 0 * * * * * * 1000 0 0 C 2 * 0 * * * * * * * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 A 3 0 * * * * * * * * * * * * * * * * * * * 3 0 * * * * * * 1335 0 0 S 4 * * * * * * * * * 1000 * * * * * 1000 * * * * 4 0 * * * * * * 1335 0 0 R 5 * * * * * * * * * * * * * * 0 * * * * * 5 0 * * * * * * 1335 0 0 C 6 * 0 * * * * * * * * * * * * * * * * * * 6 0 * * * * * * 1335 0 0 P 7 * * 1000 * * * * * * * * * 1000 * * * * * * * 7 0 * * * * * * 1335 0 0 R 8 * * 1000 * * * * * * * * * * * 1000 * * * * * 8 1000 1000 * 0 * * * 1335 1000 0 P 9 * * * * * * * * * * * * 0 * * * * * * * 9 0 * * * * * * 1335 0 0 C 10 * 0 * * * * * * * * * * * * * * * * * * 10 0 * * * * * * 1335 0 0 N 11 * * * * * * * 1000 * * * 1000 * * * * * * * * 11 0 * * * * * * 1335 0 0 A 12 1000 * 1000 * * * * * * * * * * * * * * * * * 12 0 * * * * * * 1335 0 0 G 13 * * * * * 0 * * * * * * * * * * * * * * 13 0 * * * * * * 1335 0 0 L 14 * * * * * * * * * 1000 * * * * * 1000 * * * * 14 0 * * * * * * 1335 0 0 C 15 * 0 * * * * * * * * * * * * * * * * * * 15 0 * * * * * * 1335 0 0 C 16 * 0 * * * * * * * * * * * * * * * * * * 16 0 * * * * * * 1335 0 0 S 17 * * * * * * * * * * * * * * * 0 * * * * 17 0 * * * * * * 1335 0 0 I 18 * * * * * * * 1000 1000 * * * * * * * * * * * 18 0 * * * * * * 1335 0 0 Y 19 * * * 1000 * * * * * * * * * * * * * * * 1000 19 0 * * * * * * 1335 0 0 G 20 * * * * * 1000 * * 1000 * * * * * * * * * * * 20 0 * * * * * * 1335 0 0 Y 21 * * * * * * * 1000 * * * * * * * * * * * 1000 21 0 * * * * * * 1335 0 0 C 22 * 0 * * * * * * * * * * * * * * * * * * 22 0 * * * * * * 1335 0 0 G 23 * * * * * 0 * * * * * * * * * * * * * * 23 0 * * * * * * 1335 0 0 S 24 * * * * * * * * * * * * * * * 1000 * * * 1000 24 0 * * * * * * 1335 0 0 G 25 * * * * * 0 * * * * * * * * * * * * * * 25 0 * * * * * * 1335 0 0 A 26 1000 * * * * * * * * * * * 1000 * * * * * * * 26 0 * * * * * * 1335 0 0 A 27 1000 * * * * * * * * * * * * * * 1000 * * * * 27 0 * * * * * * 1335 0 0 Y 28 * * * * * * * * * * * * * * * * * * * 0 28 0 * * * * * * 1335 0 0 C 29 * 0 * * * * * * * * * * * * * * * * * * 29 0 * * * * * * 1335 0 0 G 30 * * * * * 0 * * * * * * * * * * * * * * 30 0 * * * * * * 1335 0 0 A 31 0 * * * * * * * * * * * * * * * * * * * 31 0 * * * * * * 1335 0 0 G 32 * * * * * 0 * * * * * * * * * * * * * * 32 0 * * * * * * 1335 0 0 N 33 * * * * * * * * * * * 0 * * * * * * * * 33 0 * * * * * * 1335 0 0 C 34 * 0 * * * * * * * * * * * * * * * * * * 34 0 * * * * * * 1335 0 0 R 35 * * * * * * * * * * * * * * 1000 * 1000 * * * 35 0 * * * * * * 1335 0 0 C 36 * 1000 * * * * * * * * * * * * * 1000 * * * * 36 0 * * * * * * 1335 0 0 Q 37 * * * * * * * * * * * * * 0 * * * * * * 37 0 * * * * * * 1335 0 0 C 38 * 0 * * * * * * * * * * * * * * * * * * 38 0 * * * * * * 1335 0 0 R 39 * * * * * * * * * * * * * * 0 * * * * * 39 0 * * * * * * 1000 0 0 G 40 * * * * * 0 * * * * * * * * * * * * * * 40 0 * * 0 * * * 1000 0 0 //