HHsearch 1.5 NAME d1nmra_ FAM FILE d1nmra_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1nmra_.a3m DATE Tue Mar 9 06:44:48 2010 LENG 85 match states, 85 columns in multiple alignment FILT 73 out of 77 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.9 EVD 0.4406 0.9174 SEQ >ss_dssp CCCCCCCCCTTHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTHHHHHHTTCCTHHHHHHHHHHHHHHTTCCCCC >sa_dssp EEEEEEEEEEEEEEEEEDEEDEDCEDCBEEADEBAEEECEEBADCACDCAECEEAAEEBEEDDEECACDCABEBAEEDDEEDEEE >ss_pred CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC >ss_conf 9867774604899984089599999984788899999787531457688724899999999669999999999999999996469 >Consensus gxxxxxqxxxxxsxlaxxxpxxQkqxLGerLypxVxxxxpxxAxKITGMLLEmxxxellxLLxsxxxLxxkVxEAxxvLxxxqxx >d1nmra_ GSSLASQGQNLSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLLEMDNGEILNLLDTPGLLDAKVQEALEVLNRHMNV >UniRef50_A0BVN1(439-516:517) Chromosome undetermined scaffold_130, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0BVN1_PARTE E=0.0005 s/c=0.59 id=20% cov=88% --------QFLQSLQAQGNEKKITAIVGAILFPLVnQQVEQKLAPQVTGILLDFENyglEDQFKMLQDATYLNEQINQAVDLIRKS--- >UniRef50_UPI000069E108(308-387:405) UPI000069E108 related cluster n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI000069E108 E=1e-22 s/c=1.34 id=35% cov=92% ------QEPLTISLLVSASPHEQKQMLGVRLFPLVQIIDKKLAEKITGILLEFDTSEIIYMLESPELLRTMANKAVTLLQGHQ-- >UniRef50_A7SCP7(48-136:346) Predicted protein n=2 Tax=Nematostella vectensis RepID=A7SCP7_NEMVE E=8e-13 s/c=0.84 id=32% cov=93% -SLLSDEKRLNERIIAAASllgdENSQRtpdlQSLGDRVYGTVQQLYPTLAERVTGMLLEMPADQLNHLLDSREGLLEHIHTAAHVL------ >UniRef50_A7TSM7(189-251:264) Putative uncharacterized protein (Fragment) n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TSM7_VANPO E=3e-11 s/c=1.11 id=34% cov=68% --------------------QKQRQALGEELYKKVSAktSDEEAAGKITGMILDLPPQEVMPLLENNELFEQHFKEAFA-------- >UniRef50_Q4TBX5(1-66:216) Chromosome undetermined SCAF7082, whole genome shotgun sequence n=2 Tax=Clupeocephala RepID=Q4TBX5_TETNG E=3e-10 s/c=1.00 id=28% cov=79% -----------------MDDHEDLETLGEKLYTILYPKHKDNAGKITGMLLELPVPVLNQMLRDEASLATAVDKALGALEGAQ-- >UniRef50_B0WJQ7(225-286:502) Putative uncharacterized protein n=1 Tax=Culex quinquefasciatus RepID=B0WJQ7_CULQU E=1e-09 s/c=1.04 id=34% cov=66% ----------------------ERRALTDRLYLVVRQLNASMAGSITAKLLELD--DLPQLMTQPVALKAKVDETVVAL------ >UniRef50_A7SCP7(274-345:346) Predicted protein n=2 Tax=Nematostella vectensis RepID=A7SCP7_NEMVE E=6e-11 s/c=0.95 id=34% cov=80% ------------TAIEGLSEPEQKEFIGEKIHDEIRKLHPGHADVITGMLLEMGVDQLLNTILNPALFSDMVQQSYSSL------ >UniRef50_A5BL38(377-432:433) Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5BL38_VITVI E=8e-13 s/c=1.34 id=33% cov=67% ----------LASTHASVASDQQRTMLGESLYPLLDQLENEMAVKVIGPFLEVDQTEGLHLFESLE------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 2233 0 0 S 2 * * 2087 2615 * * * 2908 * * * * * * * 1535 * 3021 * * 2 0 * * * * * * 2611 0 0 S 3 2251 * * * * * * * * 2652 * 2924 3488 * 3473 2229 * 3230 * * 3 0 * * * * * * 2745 0 0 L 4 * * * * * * * 1449 * 1327 * * * * * * 3299 2906 * * 4 0 * * * * * * 2951 0 0 A 5 3702 3449 * * * 2833 3969 * * * * * 2257 3493 * 1602 * * * * 5 0 * * * * * * 3048 0 0 S 6 3493 * 2391 3430 * 3029 4125 * * * * * 3452 * 4046 2800 4037 3449 * * 6 0 * * * * * * 3048 0 0 Q 7 * * * 2792 * * * * * * 3259 * 3683 570 * * * * * * 7 0 * * * * * * 2954 0 0 G 8 * * * 1795 * 1323 * * 3450 * * 2685 * * * 3942 * * * * 8 101 3888 * 0 * * * 3058 1000 0 Q 9 5057 * 3645 * * * * * * * * 4161 2239 1299 3089 4103 4636 * * * 9 0 * * * * * * 3296 0 0 N 10 3610 * 4347 4693 3532 4239 * * * 1043 * 2531 * * * 4946 * * * * 10 0 * * * * * * 3319 0 0 L 11 * * 5589 4827 4328 * * 4936 * 1366 * 3416 5190 * * * 1504 * * * 11 0 * * * * * * 3597 0 0 S 12 1482 * * 3462 4947 * * 4042 * 5215 * 5279 * 2318 * 2288 * * * * 12 0 * * * * * * 3663 0 0 T 13 2805 * * 5395 * * 5517 * * 5101 * 4212 * 4769 4404 1268 2485 4307 * * 13 50 4878 * 2000 415 * * 3837 1000 0 V 14 2349 * 5590 * * * 4910 2727 * 3401 3129 5143 * 4478 * 2930 4386 3993 * 3746 14 34 5412 * 1000 1000 * * 3831 1000 0 L 15 * * * * 5804 * 4545 2811 * 561 * * * 4535 4805 * * 4639 * * 15 0 * * * * * * 3977 0 0 A 16 754 * 3948 3650 * * * * * * * 3325 * * * 4328 * 3147 * * 16 0 * * * * * * 3940 0 0 N 17 2710 * 3398 * * 4417 4332 * 5794 4588 * 2751 * 3538 4272 2070 3805 * * * 17 0 * * * * * * 3938 0 0 L 18 1221 * * * * 3746 * * 4530 2154 3570 * 5282 * 4004 5702 * 4750 * * 18 0 * * * * * * 4015 0 0 T 19 2909 * 5124 * * * * * 5086 5778 * 3821 2705 4192 * 1560 2713 5642 * * 19 50 4885 * 2000 415 * * 4053 1000 0 P 20 5321 * 2861 2658 * * * * 4921 6268 * * 888 * 5339 4762 * * * 5008 20 0 * * * * * * 4053 0 0 E 21 2951 * 3103 1793 * 6118 3173 * 4093 * * 4943 4268 2581 * 6250 5861 * * * 21 52 5667 6006 0 * * * 4033 1000 0 Q 22 * * 3805 1585 * * 5969 * 3331 6107 6235 * * 1481 5031 4244 * 6606 * * 22 55 4743 * 2904 207 * 0 4033 1525 1000 Q 23 * * 4260 4010 * * 4634 4889 4828 * * * * 471 * 5248 * 5133 * * 23 0 * * * * 0 * 4038 0 1000 K 24 * * * * * * * * 765 4825 * 5833 6557 5207 1899 * 4238 * * * 24 67 5163 5818 2000 415 * * 4156 1000 0 N 25 4086 * 4561 2602 * * * * 5781 * 5829 3544 * 1170 3455 * 4075 5810 * * 25 37 * 5306 * * * 0 4170 0 1346 V 26 2636 * * 4419 4962 5507 * 2693 * 2607 2148 * * 4781 * 5122 4583 3884 * 5692 26 0 * * * * 0 * 4184 0 1430 L 27 * * * * * * * 2186 * 468 * * * * * * * 4130 * * 27 0 * * * * * * 4200 0 0 G 28 * * * * * 82 * * * * * * * * * 5728 4791 * * * 28 0 * * * * * * 4227 0 0 E 29 5390 * 2794 718 * * 6475 * 4094 * 5477 4068 * 5179 * 5545 * 5427 * * 29 0 * * * * * * 4227 0 0 R 30 4889 * * 6152 * * 4116 5394 3212 4501 6216 6090 4481 3145 1202 4310 4393 * * * 30 0 * * * * * * 4231 0 0 L 31 * * * * * * * 3407 * 184 * * * * * * * 5297 * * 31 0 * * * * * * 4231 0 0 Y 32 * * * * 1538 * 4582 * * 5240 5169 * * * * * * * * 837 32 0 * * * * * * 4231 0 0 N 33 5707 * 5032 3539 5805 5297 * * 4715 3626 * 6413 890 * * 3518 3981 * * * 33 0 * * * * * * 4231 0 0 H 34 * * * 5032 * * 6413 3618 1852 1420 5805 * * 4724 3354 * 5297 4793 * 6593 34 0 * * * * * * 4231 0 0 I 35 * * * * * * * 1497 * 4298 * * * * * * * 749 * * 35 50 4868 * 2694 242 * * 4231 1604 0 V 36 3722 6721 3726 2921 * 5169 3761 * 5641 * 4719 6676 * 1854 3222 4452 5478 5067 * 4157 36 0 * * * * * * 4231 0 0 A 37 2234 * * 3684 * 5734 * 4615 3867 6457 * 4231 4745 1862 3060 3887 7184 6606 * * 37 39 5224 * 1000 1000 * * 4231 1078 0 I 38 * * 6746 5623 5132 * 3739 2599 4687 1572 3852 * * 4109 6457 3415 6824 3960 * 5545 38 103 3857 * 1687 536 * * 4231 2106 0 N 39 5404 5240 3240 2677 5003 * 2914 * * 5169 * 2791 * 2543 5273 5931 * 4801 * 3294 39 33 5478 * 0 * * * 4231 1000 0 P 40 3756 * * 3920 * * 4723 * 4560 * * 3914 730 4290 * 4849 5341 * * * 40 31 5554 * 3322 152 * * 4231 1000 0 A 41 3683 * 3216 1654 5793 4121 5160 5478 3732 5690 * 3943 * 4488 * 3860 3683 5648 * * 41 0 * * * * * * 4231 0 0 A 42 4327 * * * 4965 * 2957 * 6216 1341 3423 3035 * 5240 6435 * 5073 4982 5648 4426 42 69 4413 * 1545 605 * * 4231 1704 0 A 43 255 5554 * * * * * * * * * * * * * 3990 4116 5648 * * 43 0 * * * * * * 4231 0 0 A 44 2575 * 4341 4364 * 1493 * * * * * 3419 2530 5822 * 4334 * 4985 * 6216 44 0 * * * * * * 4231 0 0 K 45 * * 5690 * * * 5073 * 350 * * * * 4435 4227 4793 * 5032 * * 45 0 * * * * * * 4231 0 0 V 46 * * * * * * * 409 * 4685 * * * * * * * 2264 * * 46 0 * * * * * * 4231 0 0 T 47 * * * * * * * 4985 * * * * * * * * 46 * * * 47 0 * * * * * * 4231 0 0 G 48 4793 5734 * * * 124 * * * * * 5169 * * * * * * * * 48 0 * * * * * * 4231 0 0 M 49 * * * * * * * 3336 4793 5169 312 * 4985 * * * * * * * 49 0 * * * * * * 4231 0 0 L 50 * * * * 4179 * * 3789 * 394 3169 * * * * * * * * * 50 0 * * * * * * 4231 0 0 L 51 * * * * * * * * * 0 * * * * * * * * * * 51 0 * * * * * * 4231 0 0 E 52 * * 2519 426 * 4278 * * * * * * * 5073 * * * * * * 52 25 5873 * 0 * * * 4231 1000 0 M 53 * * * * 3364 * 4513 3524 * 1735 1408 * * 4529 * * * 4276 * * 53 41 5169 * 1585 585 * * 4231 1000 0 D 54 6149 * 1274 3160 * 4046 * * 5404 * * 4393 1995 * * 3682 * * * * 54 53 * 4793 * * * * 4231 0 0 N 55 3790 * 5863 * * * * * 4542 * * 1540 2716 2981 5768 4695 3587 3257 * * 55 36 5352 * 1585 585 * 0 4170 1000 1000 G 56 2432 * 2785 3212 * 5514 6708 * 5361 * * 6066 4634 4382 * 2174 2858 * * 4532 56 0 * * * * 0 * 4170 0 1000 E 57 4210 * 2934 864 * * * * 5805 * * * * 2307 * * 5240 5698 * * 57 20 6149 * 0 * * * 4231 1000 0 I 58 5404 * * * 5731 4985 5160 2427 * 974 * * * 5394 * * * 2481 * * 58 33 5478 * 1585 585 * * 4231 1000 0 L 59 * * * * 3804 * * 2797 * 836 5455 4484 4793 * 5690 5160 * 4324 * 5404 59 0 * * * * * * 4231 0 0 N 60 5454 * * 3329 * * 2409 5489 4839 3921 3324 3355 5224 3145 5478 3405 4037 5160 * 5435 60 0 * * * * * * 4231 0 0 L 61 * * * * * * * 5931 * 594 2441 * * * * * 5032 4070 5073 5879 61 0 * * * * * * 4231 0 0 L 62 * * * * 4453 * * 2847 * 497 4124 * * * * * 5873 4942 * * 62 0 * * * * * * 4231 0 0 D 63 3753 5098 3195 1501 * * * * 6479 5032 * 5404 * 3411 4127 3408 3405 5805 * 6487 63 0 * * * * * * 4231 0 0 T 64 * * 1946 5240 * * 5734 * * * * 2782 * 4793 5873 1119 4790 * * * 64 0 * * * * * * 4231 0 0 P 65 4024 * 3353 1999 * * 5259 * * 4985 * 4485 1849 3646 4312 3856 6457 * * * 65 0 * * * * * * 4231 0 0 G 66 3246 * 2578 1380 5793 4711 * 6115 3670 * * 4638 6824 4440 5648 6885 4872 4793 * * 66 0 * * * * * * 4231 0 0 L 67 1830 * 6449 4521 * 5276 * * * 2317 4274 5635 * 3335 5244 3058 4139 * * 3984 67 24 5907 * 0 * * * 4192 1000 0 L 68 * * * * 3220 * * 6095 * 213 6049 * * * * * * * * * 68 0 * * * * * * 4192 0 0 D 69 3853 5984 4566 3585 * 5451 * 5907 2021 4502 * 3779 * 4569 2229 3789 5042 6904 * 5635 69 0 * * * * * * 4192 0 0 A 70 1904 * 3350 2353 * * * 5711 4710 6049 5987 4530 * 2764 * 3624 4430 4927 * * 70 0 * * * * * * 4192 0 0 K 71 3540 * * * * * 4237 * 1049 * 3777 4271 * 3515 2596 * * * * * 71 0 * * * * * * 4192 0 0 V 72 4236 5536 * * 5274 * * 1851 * 5862 * * * * * * * 756 * 6275 72 0 * * * * * * 4192 0 0 Q 73 3887 * 1856 3159 * 5112 4445 * 4129 * * 2952 * 2815 3804 5953 5244 5226 * * 73 0 * * * * * * 4192 0 0 E 74 5517 * * 631 * * * * 3430 * * * * 2585 * 5783 4192 * * * 74 0 * * * * * * 4192 0 0 A 75 170 5541 * * * 5536 * * * * * * * * * 5020 4746 * * * 75 0 * * * * * * 4192 0 0 L 76 4155 * * * 4187 * 5514 3392 * 1911 3321 5755 * 4130 5110 5050 5882 2369 * 4045 76 0 * * * * * * 4188 0 0 E 77 2812 5236 3129 2036 * 3743 5249 * 3941 * 6843 4941 * 5157 4304 3585 4527 4054 * * 77 0 * * * * * * 4188 0 0 V 78 3022 * * * * * * 3309 * 2171 5198 * * * * 4957 5187 1098 * * 78 0 * * * * * * 4177 0 0 L 79 * * * * * * * 2482 * 402 * * * * * * * * * 3959 79 0 * * * * * * 4177 0 0 N 80 * 5414 5279 3295 * * 6179 6341 2478 4708 6277 3404 * 2195 2419 * * 3438 * * 80 0 * * * * * * 3821 0 0 R 81 2607 * * 2191 * 3311 * * 3261 * 5895 4918 * 3329 3702 2430 * * * * 81 0 * * * * * * 3737 0 0 H 82 2919 * * * * * 842 * 4703 * * * * * 4528 2678 * * * 3797 82 0 * * * * * * 3482 0 0 M 83 * * * 4282 * * * * * * 2257 4663 * 515 * * * * * * 83 0 * * * * * * 3099 0 0 N 84 2279 * * * * * * * * * * 2278 * * * 1135 2918 * * * 84 0 * * * * * * 2735 0 0 V 85 * * * * * * * 1972 * * * * * * * * * 425 * * 85 0 * * 0 * * * 1771 0 0 //