HHsearch 1.5 NAME d1mwpa_ FAM FILE d1mwpa_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1mwpa_.a3m DATE Tue Mar 9 02:47:32 2010 LENG 96 match states, 96 columns in multiple alignment FILT 29 out of 33 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.6 EVD 0.3848 -1.0756 SEQ >ss_dssp CCCCCEEECCTTSBCEEECTTTCCEEECTTSCCBCCCSHHHHHHHHHHHSTTSCEEEEEECSSCEEECCEEEGGGEEEECCCEEECCEEEEECCCC >sa_dssp EEDDBBAACDEEBBAABBCCEDDECDBADDADDDCCEDDEBACEAADDBBEEDDBDDADECEEDCEADDABDEEDDDDEEEDCECDACCACEBEEE >ss_pred CCCCCEEEEECCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCEEEEEEECCCCCC >ss_conf 976760656427753034245674214688766465798999999998678884000564487535110242636626578517854660388749 >Consensus xxxePqVAxxCgkxxxhxxxxtGxWxxDxxxxxxCxxxkxxILxYCxkxYPxlxItnVveasxxvxixxWCxxgxxxCxxxxhxVxPyRCLvGeFv >d1mwpa_ LLAEPQIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRGRKQCKTHPHFVIPYRCLVGEFV >UniRef50_UPI0001925F55(31-121:629) PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001925F55 E=2e-18 s/c=1.03 id=41% cov=96% ---EPRVAINCGKVPFYVDLETGSWIADSNGVAVCDADKDEVKRYCQKTYPKLNISNVVEANTAVKFKNWCQPGIQQCSVTKR-VVPFRCLVNEY- >UniRef50_UPI0001555F86(98-190:425) PREDICTED: similar to amyloid precursor-like protein 1 n=1 Tax=Ornithorhynchus anatinus RepID=UPI0001555F86 E=2e-16 s/c=0.94 id=40% cov=98% -VGDPQVALGCGTLSLHRDLRTGQWQPDPQRSHGCFRGPHQVLAYCQQMYPELRVGR-VEAAEPIPMARWC-RGAPGERCPHHVIVPYRCLPGEFV >UniRef50_A8PZK5(42-130:740) Amyloid A4 extracellular domain containing protein n=1 Tax=Brugia malayi RepID=A8PZK5_BRUMA E=9e-16 s/c=0.95 id=44% cov=94% ----PLVAFQCGFRNRFMS-EDGAWLSDPSTLATCFSGKLDILKYCRKSYPKLDVTNIVEYSHEVEIPGWCREQGSSCR-WTHTVRPYQCIVGEF- >UniRef50_Q06BR2(31-121:612) Amyloid protein n=1 Tax=Loligo pealei RepID=Q06BR2_LOLPE E=8e-14 s/c=0.86 id=45% cov=95% ---EPMVAFICNKPAMH-RVPSG-WVPDDDPAKSCVKQPEEILEYCKKLYPDHDITNVLQASYKVTIPNWCGFNVTHCHKHgNHTVRPFRCLVGPF- >UniRef50_Q4ZHV6(27-125:747) Amyloid protein n=2 Tax=Neoptera RepID=Q4ZHV6_MANSE E=3e-11 s/c=0.70 id=42% cov=97% --AEPQVAVLCeagSTYHPQYMSAAGRWTPDlTTKPHNCLKDKMEILDYCKKVYPSHDITNIVEASHYVKVSNWCKLGTSnaaKCKV-TRWVKPFRCLEG PF- >UniRef50_C0JV68(46-134:740) Amyloid beta (A4) protein n=3 Tax=Echinoida RepID=C0JV68_PARLI E=8e-10 s/c=0.73 id=39% cov=94% ---ELRVALRDGYYSKYADIISGQWLTDMSAEYTS-DTKE-ILNYCRKKYPNPEINNIVDSSQPTLIEQWCPVNGEEC-TSSATVTYYRCLAGPF- >UniRef50_B3RTK7(31-119:512) Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RTK7_TRIAD E=2e-06 s/c=0.60 id=31% cov=94% -----RVTFNCNKVPKYYDLVSKDFVDDKSGIAQCPKNKTEILDYCRKVYKDYDIVNIVHENMYQHFNNWCDNERKMCYFSGTSRV-YRCVVGLF- >UniRef50_C3XR12(1-92:666) Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3XR12_BRAFL E=9e-32 s/c=1.49 id=46% cov=96% ----PMVAMVKDKMNQHINLDSGKWETDPTGKHGFKDKPQDILDYCKMMYPNLEITNIEEHTKEIKIENWCKPGSTaPCGGHPHKVRPFRCLVGRF- >UniRef50_C4QB47(24-113:696) Alzheimer's disease beta-amyloid related n=1 Tax=Schistosoma mansoni RepID=C4QB47_SCHMA E=2e-19 s/c=1.07 id=35% cov=88% ------VAFECGKPAIYLN--NEFWVTDLT--QGCLEDELSILNYCKKVYSERNITAVVSAPPiDVVLSDWCEFAHKklaKCQSigdKRHEIKPFICLDN --- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * * * 0 * * * * * * * * * * 1 0 * * * * * * 1199 0 0 L 2 3752 * * * * * * * * 1892 * * * * * * * 608 * * 2 0 * * * * * * 1908 0 0 A 3 413 * * * * 2868 * * * * * * * * * 3161 * * * * 3 0 * * * * * * 2285 0 0 E 4 * * 2967 308 * * * * * * * * * 3957 * * * * * * 4 0 * * * * * * 3126 0 0 P 5 * * * * * * * * * 3743 * * 112 * * * * * * * 5 0 * * * * * * 3347 0 0 Q 6 * * * * * * * * * 3381 2555 * * 885 2378 * * * * * 6 0 * * * * * * 3600 0 0 I 7 * * * * * * * 2199 * 4788 * * * * * * * 423 * * 7 0 * * * * * * 3740 0 0 A 8 165 * * * * * * * * * * * * * * 4776 3807 * * * 8 0 * * * * * * 3740 0 0 M 9 * * * * 1924 3892 * 4418 * 2525 1746 * * * * * 5154 3029 * * 9 0 * * * * * * 3740 0 0 F 10 * * * 3710 1933 4648 * 4740 * 2080 * 3080 * 4540 4078 4829 * 4483 4396 * 10 0 * * * * * * 3740 0 0 C 11 * 158 4078 * * * * * 4483 * * * * * * * * * * * 11 164 3216 * 1391 693 * * 3740 1568 0 G 12 * * 4483 4021 * 552 * * * * * 3199 * 4776 4891 4936 * * * * 12 41 5154 * 2000 415 * * 3740 1000 0 R 13 4899 * * * 4540 * 4891 * 1182 4707 * * * * 2481 * 3197 * * 3030 13 0 * * * * * * 3740 0 0 L 14 * * * * * 4899 * 4702 * 1782 4483 * 3135 3831 3678 * * 2308 * 2961 14 0 * * * * * * 3740 0 0 N 15 2817 * * * * * 3854 * * 4966 4707 1457 2695 4899 * 3335 3892 * * * 15 0 * * * * * * 3740 0 0 M 16 * * * * 4418 * * 3185 2936 2226 2375 4702 3854 2685 4540 * * * * * 16 0 * * * * * * 3740 0 0 H 17 * * * * 4540 * 924 * * * * * * 3216 * * * * * 1632 17 55 * 4740 * * * * 3740 0 0 M 18 4034 * * * 4733 * * 3935 * 3661 1780 * * 4859 3167 * * 2548 * 2747 18 54 * 4761 * * 0 * 3697 0 1000 N 19 * * 1400 * * 5094 * * * 3698 4867 1487 4845 * 4673 4326 * * * * 19 258 4845 2957 1585 585 0 * 3723 1000 1000 V 20 4482 * * 4968 * * * 2099 * 1384 * * * * * 3097 3573 3242 * * 20 0 * * * * 1172 846 3562 0 1664 Q 21 4848 * 4420 1769 * * * 3997 * * * 4302 4592 2052 3122 * 4676 3729 * * 21 44 * 5047 * * 0 * 3600 0 1096 N 22 4863 * 4500 3175 * 4628 * * * * * 2885 * * * 1896 1449 * * * 22 0 * * * * 0 * 3738 0 1000 G 23 * * * 3710 * 297 * * 3807 * * * * 4702 * * * * * * 23 55 * 4740 * * * * 3740 0 0 K 24 4480 * 3765 4359 3661 * * * 2437 * * * * 2234 1880 3558 * * * * 24 0 * * * * 0 * 3697 0 1000 W 25 * * * * 3807 * * * * * * * * * * * * * 107 * 25 0 * * * * * * 3740 0 0 D 26 4396 * 5665 1735 * * * 4418 4829 2853 * * * 4648 * * 3854 1722 * * 26 0 * * * * * * 3740 0 0 S 27 3537 * 3807 * * * * * * * * * 1452 * * 2449 1768 * * * 27 41 * 5154 * * * * 3740 0 0 D 28 * * 0 * * * * * * * * * * * * * * * * * 28 50 4863 * 0 * 0 * 3738 1000 1000 P 29 * * 3784 4396 * * * 4666 3807 3224 4078 * 1185 * * 3171 4270 * * * 29 0 * * * * * * 3740 0 0 S 30 * * 3721 4829 * * * * * * * 3407 * 2494 4788 1635 1949 * * * 30 173 4776 3710 1585 585 * * 3740 1000 0 G 31 3997 * 5047 * * 966 * * 3798 * * * 3021 * 2691 * 4465 * * * 31 0 * * * * * 0 3600 0 1096 T 32 4592 * * 3997 * 4655 4302 3126 2678 4465 * * 4848 * 3717 3122 2560 4204 * 4645 32 0 * * * * 0 * 3600 0 1096 K 33 2090 * * * * * 3092 * 2300 * * 5814 4788 2769 3892 3573 4899 * * 4078 33 49 4899 * 1585 585 * * 3740 1000 0 T 34 * * 4666 * * 2381 * * 5659 * 4396 4936 * 3807 3892 2323 2030 3553 * * 34 0 * * * * * * 3740 0 0 C 35 * 158 * * 4483 * * * * * * * * * * 4078 * * * * 35 88 * 4078 * * * * 3740 0 0 I 36 * * 4357 * 1829 * * 3354 4292 1942 5057 * 3726 * * 3460 * 3961 * * 36 57 4693 * 0 * 0 * 3628 1000 1000 D 37 4418 * 2617 4127 * 3674 * * 2196 * * * * * 2348 2918 3217 * * * 37 0 * * * * * * 3740 0 0 T 38 * * 1329 * * 3083 * * 4483 * * 3807 * 3849 * 3579 2220 * * * 38 0 * * * * * * 3740 0 0 K 39 * * * 3710 * * * * 698 * * * 2175 * * 4707 4396 * * * 39 0 * * * * * * 3740 0 0 E 40 * * 3592 1988 * * 3677 * 4396 2461 3284 * * 3157 * 4966 3807 4666 * * 40 88 * 4078 * * * * 3740 0 0 G 41 * * 2263 1356 * 3592 * * 4894 * * * * 3439 3818 3042 * * * * 41 0 * * * * 0 * 3628 0 1000 I 42 * * * * * * * 670 * 3836 * * * * * * * 1730 * * 42 0 * * * * * * 3740 0 0 L 43 * * * * * * * * 4418 69 * * * * * * * * * * 43 0 * * * * * * 3740 0 0 Q 44 4648 * 2192 2545 * * 5788 * 2627 * * 2882 * 3065 3953 3831 * * * * 44 0 * * * * * * 3740 0 0 Y 45 * * * * * * * * * * * * * * * * * * * 0 45 0 * * * * * * 3740 0 0 C 46 * 0 * * * * * * * * * * * * * * * * * * 46 0 * * * * * * 3740 0 0 Q 47 * * * * * * * * 1789 * * * * 1475 1511 * * * * * 47 0 * * * * * * 3740 0 0 E 48 * * * 1933 * * 4396 * 893 * 4483 * * 3221 * * * * * * 48 0 * * * * * * 3740 0 0 V 49 3369 * * * * * * 4788 4078 4740 1717 * * * * 4540 4418 1409 * * 49 0 * * * * * * 3740 0 0 Y 50 * * * * * * * * * * * * * * * * * * * 0 50 0 * * * * * * 3740 0 0 P 51 * * * * * * * * 3807 * * * 262 * * 3403 * * * * 51 0 * * * * * * 3740 0 0 E 52 4707 * 2619 1826 * 3212 * * 2295 * * 2863 * * * 3882 * * * * 52 0 * * * * * * 3740 0 0 L 53 * * * * 5463 * 3835 * * 920 4829 * 4078 * 2231 * * * * 3807 53 0 * * * * * * 3740 0 0 Q 54 * * 1639 3266 * * * * * * * 2280 * 1781 4648 * 4707 * * * 54 0 * * * * * * 3740 0 0 I 55 * * * * * * * 202 * * * * * * * * * 2939 * * 55 0 * * * * * * 3740 0 0 T 56 3892 * * * * 4648 * * * * * 4078 * * 4702 2603 839 3807 * * 56 0 * * * * * * 3740 0 0 N 57 4756 * * * * 4788 3831 * * * * 494 * * 3221 * 4666 * * * 57 59 * 4648 * * * * 3740 0 0 V 58 * * * * * * * 1202 * * * * * * * * * 823 * * 58 0 * * * * 0 * 3697 0 1000 V 59 4788 * * 2455 * * * * * 4740 4643 * * * * * * 506 * * 59 0 * * * * * * 3740 0 0 E 60 * * 4078 539 * * 3807 * * * * * * 3254 * 3710 * * * * 60 0 * * * * * * 3740 0 0 A 61 807 * * 3807 * * 4483 * * * * * * * * 2095 * * * 3678 61 0 * * * * * * 3740 0 0 N 62 3716 * 5463 * * * * * 4707 * * 1744 3710 * * 1411 3157 * * * 62 0 * * * * * * 3740 0 0 Q 63 * * * 4067 * * 2259 * 3590 * 3071 * 3710 1745 4702 4966 4418 * * 4740 63 115 3710 * 0 * * * 3740 1096 0 P 64 3131 * 3710 3025 * * * * 4740 * * 4396 1653 5463 5628 * * * * 2055 64 0 * * * * * * 3740 0 0 V 65 4966 * * * 4707 * * 2377 * * * * * 2821 * * 4078 1005 * 4702 65 0 * * * * * * 3740 0 0 T 66 * * * 4540 * * 3186 * 2365 4078 * * 3221 * 4300 2939 2127 3710 * * 66 0 * * * * * * 3740 0 0 I 67 * * * * 3080 * * 881 * 3710 3221 * * * * * * 2688 * * 67 0 * * * * * * 3740 0 0 Q 68 4648 * 3112 2366 * 3836 4707 * 3407 * * 3807 3637 3515 * 2537 4788 * * * 68 0 * * * * * * 3740 0 0 N 69 4707 * 3164 * * 2241 * * * * * 1236 * 4078 3221 * 4396 * * * 69 0 * * * * * * 3740 0 0 W 70 * * * * * * * * * * * * * * * * * * 0 * 70 0 * * * * * * 3740 0 0 C 71 * 0 * * * * * * * * * * * * * * * * * * 71 59 * 4648 * * * * 3740 0 0 K 72 * * 3026 3682 * 3108 * * 1554 * * * 4031 3544 2352 * * * * * 72 0 * * * * 0 * 3697 0 1000 R 73 * * * 3678 3135 3892 * * 2944 4936 5798 3216 2581 3836 3087 * * 3356 * * 73 33 * 5463 * * * * 3740 0 0 G 74 3794 * 4564 3209 * 956 * * 4373 * * 3338 * 3637 * 4859 * * * * 74 106 3817 * 1585 585 0 * 3746 1136 1000 R 75 3186 * * * * 2864 4756 4418 3323 * * 3524 * 4702 1951 4483 4936 4740 3831 * 75 108 3794 * 636 1488 * * 3740 1581 0 K 76 3836 * * 4078 * 3928 * * 2024 * * * 4648 4418 4148 1952 3181 4396 * * 76 241 2701 * 1123 887 * * 3740 1937 0 Q 77 5463 * * 3390 * 3765 3849 * 2271 * 3807 4396 3645 2478 3796 3619 * * * * 77 0 * * * * * * 3740 0 0 C 78 * 110 * 4648 * * * * * * * * * * * 4892 * * * * 78 88 * 4078 * * * * 3740 0 0 K 79 4817 4820 * * * 4292 4638 * 1468 * * 4328 * 2695 2758 4357 * * * 3726 79 158 * 3271 * * 0 * 3628 0 1000 T 80 3492 4461 * * 3680 1735 4799 * 4574 4979 * * * * * 2962 2630 3510 * * 80 459 3594 2397 1585 585 689 1397 3667 1096 1679 H 81 4265 * * 4441 * * 1386 * 4515 * * * 3512 * 4699 2349 4135 * 3375 * 81 70 4395 * 0 * 223 2802 3624 1000 2221 P 82 5394 * * * * 3801 3205 * 4401 * * 4719 2665 3765 3680 2581 2093 * * * 82 0 * * * * 0 * 3747 0 1000 H 83 4078 * * * 3831 * 903 * 4396 5706 * * * * 2338 * 3807 * * * 83 69 * 4418 * * * * 3740 0 0 F 84 * * * 3611 4580 * 4839 2222 4441 * * * * 4833 * 3153 2360 4014 2500 * 84 51 4839 * 0 * 0 * 3687 1000 1000 V 85 * * * * * * * 2424 * * * * * * 3807 * * 430 * * 85 0 * * * * * * 3740 0 0 I 86 * * * * * * * 5665 2026 3543 5706 * * * 2641 * 3654 1358 * * 86 107 * 3807 * * * * 3740 0 0 P 87 * * * * * * * * * * * * 95 * * * * * * 3974 87 0 * * * * 0 * 3594 0 1000 Y 88 * * * * 1143 * * * * * * * * * * * * * * 869 88 0 * * * * * * 3740 0 0 R 89 * * * * * * 3809 3710 3323 * * * * 4540 496 * * * * * 89 0 * * * * * * 3740 0 0 C 90 * 0 * * * * * * * * * * * * * * * * * * 90 0 * * * * * * 3740 0 0 L 91 * * * * * * * 3678 * 234 * * * * * * * 3807 * * 91 0 * * * * * * 3740 0 0 V 92 4078 * 3164 2563 * * * * * * * * 3221 * * 4707 * 959 * * 92 0 * * * * * * 3740 0 0 G 93 * * * * * 190 * * * * * 3021 * * * * * * * * 93 0 * * * * * * 3740 0 0 E 94 * * 4571 891 * * * * 4302 3729 * * 2024 * 4420 * * * * * 94 0 * * * * * * 3600 0 0 F 95 * * * * 201 * * * * * * * * * * * * * * 2940 95 0 * * * * * * 3600 0 0 V 96 * * * * * * * 3216 * * * * * * * * * 164 * * 96 0 * * 0 * * * 2205 0 0 //