HHsearch 1.5 NAME d1lmia_ FAM FILE d1lmia_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1lmia_.a3m DATE Mon Mar 8 16:32:43 2010 LENG 131 match states, 131 columns in multiple alignment FILT 13 out of 17 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.7 EVD 0.4245 0.0200 SEQ >ss_dssp CCCCEEEETTCEEEEEETTTTEEEEEEEEEEEECCCCCCSSCCCSEEEEEEEEEEEEESCBCCCGGGEEEECTTCCEEEBCCSSSCTTBCCCCCBCTTCE EEEEEEEEECSSCCCEEEEECSSSEEEEEEC >sa_dssp EEDDDDBECDDDBDBEDEEDDCCBAADABECDDBECEBDEDEDEDDBBBACACACADDCEBEBDBDCABACBEEDDDBDABEDEDCDECBDDDEBDEEED CEBCAAABBEDEEBDBAAACDEEDCBACADE >ss_pred CCCCCCCCCCCHHHCCCCCCCEEEEEEECCEECCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCC CCCEEEEEEECCCCCEEEECCCCCCEEEECC >ss_conf 9876512148643304556753533553120116650677022780787466654204612442122022236886034687136878878341366533 4416999953699875897489851673449 >Consensus AxxpxxxxfGxxxxLxdxxGxvvqxwTVsdLkxSxxxiPgYxxxGxlweAtaTxxAvxGtvTPxvxnfnArxaxGxxYxvlxqvaxpxGlxpxtlxqGxx stGkiYFDVtGxxPxxVVYndGxxdxlxWxx >d1lmia_ SAYPITGKLGSELTMTDTVGQVVLGWKVSDLKSSTAVIPGYPVAGQVWEATATVNAIRGSVTPAVSQFNARTADGINYRVLWQAAGPDTISGATIPQGEQ STGKIYFDVTGPSPTIVAMNNGMEDLLIWEP >UniRef50_A0QJ23(30-155:190) Putative uncharacterized protein n=4 Tax=Mycobacterium RepID=A0QJ23_MYCA1 E=1e-36 s/c=1.21 id=43% cov=97% -AAPNIQGFGVSEQLVD--GPLVTDYTVSNLQPSNVSIPGYTPKGTLYQADISVRSDGGVVTPMVHDFIARGPNGQNYRVIDNVAVPNGLSPAPIPQGTE STGTLYFDVTGAPPNGVVYNDGMQDVLMW-- >UniRef50_A1UCZ7(28-157:202) Putative uncharacterized protein n=4 Tax=Mycobacterium RepID=A1UCZ7_MYCSK E=1e-42 s/c=1.33 id=47% cov=99% AEMPCPHKLGSAQRLVDAAGAVVQEWTVTDLRPSADPAPGYPLAGRLWEATATVNAVTGTVTPVIPNLRAVGAGKESYPVLWQIASPAGIPAATLAQGQS SSGKLYFDVTGTDPASVVYgSAGSKPLMMW-- >UniRef50_A0R3B5(4-160:346) Immunogenic protein MPT63 n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R3B5_MYCS2 E=3e-31 s/c=1.09 id=53% cov=98% ASAVTTSTLGSAAKLNN--GDVVQAWTVTDLKPSSDTIP-YEVRGKLWEVTATDEAVQGNVTPIVSNFNVRAADGTNYRALFQVATPQGVNPSTIPQGEK ASGKIYFDVTGPEPTTVVYNAGGKDLLVWD- >UniRef50_B1MJG0(19-150:310) Putative uncharacterized protein n=1 Tax=Mycobacterium abscessus ATCC 19977 RepID=B1MJG0_MYCA9 E=1e-29 s/c=1.24 id=49% cov=98% ALMPTAGadtTLGQQGRLTN--GDVVQAWTISDLKVSTDQLP-YQPKGTLWEATATDEAIQGSVIPIVANFNAKANDGETYRVLYGVASAQGVNPGTLSQ GEKTTGKIYFDVTGANPETVTYTSGDEDLLTWK- >UniRef50_B1MBL6(9-150:151) Putative uncharacterized protein n=3 Tax=Mycobacterium RepID=B1MBL6_MYCA9 E=2e-14 s/c=0.48 id=32% cov=92% AD-PEDLDFGQKAEIPSPGGAI--DYTVSTLEPSGH-------NDGVWYSDVTARAVSGSPTPNIADFNARAVNSSTYAVM-KGDKPDGLPNQPLTAGSQ TTGRIYFDVRgGTAPDSVVYRDaGGTDKVVWK- >UniRef50_A4T1X8(1-127:158) Putative uncharacterized protein n=1 Tax=Mycobacterium gilvum PYR-GCK RepID=A4T1X8_MYCGI E=9e-41 s/c=1.35 id=44% cov=98% --MPCGHQFGSPQQLTDAGGAVVQEWVISDLRESSVALPGYTARGQVWEASATVRAVTGTVTPIIPNLYTVTAAGQRYPVLWQIASPQGLPATTLGEGQA SSGAIYFDAVGPQPMAVVYDNGTPTQLFW-- >UniRef50_B1MGM7(1-155:213) Putative uncharacterized protein n=1 Tax=Mycobacterium abscessus ATCC 19977 RepID=B1MGM7_MYCA9 E=5e-38 s/c=1.06 id=42% cov=97% AAGSCPHRFGAAQQLADAGGS--QEWTVTGLKKSAAVLPGYAPAGQLWEASATVRAERGTITPLIPNLAAH-AMGGHYPVLWQVATDQGLPATTLAEGQS SSGTIYFDVTGPDPVAVVYTVGaGAPAMMW-- >UniRef50_B2HJN6(1-149:153) Conserved hypothetical membrane protein n=2 Tax=Mycobacterium RepID=B2HJN6_MYCMM E=2e-36 s/c=1.12 id=39% cov=98% AAPPTIQGFGTSERLVD--GPMVTSYTVGNLQLSDVTIAGYLPQGQLYSADVTARSVTGTITPLVSSFNARAANGDTYGVVNEVPAPGGLNPAPILQGNS QSGVLYFDVTGPPPNGVVYNDGVQDVLIW-- >UniRef50_A0R3W3(1-152:158) Immunogenic protein MPT63 n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R3W3_MYCS2 E=2e-32 s/c=0.91 id=35% cov=95% AE--TEAGFGEAQDLVAPTGDTASV-TVTDIALSSDQIPT-EVEGQLYEATATIEAKEGTVTPVLSNFNARTADGQSYQAVYEVPASEG-NPEPLTEGAS TTGKVYFDVKGEAPDSVVYSDVGSDEVIW-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 378 * * * * * * * * * * * * * * 2117 * * * * 1 0 * * * * * * 2626 0 0 A 2 1194 * 3101 2317 * * * * * 3500 * * 3688 * * 3648 * * * * 2 366 * 2157 * * * * 2653 0 0 Y 3 2456 * * * * 2430 * * * * 1676 * 2302 * * * * * * 3100 3 0 * * * * 1070 933 2416 0 1480 P 4 * * * * * * * * * * * * 269 * * 3490 * 3619 * * 4 0 * * * * 0 * 2610 0 1000 I 5 3941 1995 * 3196 * * * 3404 * * * 2791 * * * * 1573 * * * 5 0 * * * * * * 2720 0 0 T 6 3655 * 3196 3305 * 3455 * 2138 * * * * 2647 * * * 2580 3941 * * 6 0 * * * * * * 2720 0 0 G 7 3305 * * * * 2524 1663 * * 3196 * * * 2138 * 3780 * * * * 7 119 3655 * 1585 585 * * 2720 1000 0 K 8 * * 3196 3941 * 1607 * * 2531 * * * * 3455 3625 * 2716 * * * 8 0 * * * * * * 2720 0 0 L 9 * * * * 774 * * 4061 * 1493 * * * * * * * * * * 9 0 * * * * * * 2699 0 0 G 10 * * * * * 0 * * * * * * * * * * * * * * 10 0 * * * * * * 2699 0 0 S 11 3685 * * 3384 * * * * * * * * * 2091 * 1424 2745 3840 * * 11 0 * * * * * * 2699 0 0 E 12 1677 * * 3450 * * * * 3257 * * * 3512 2439 * 2191 * * * * 12 0 * * * * * * 2699 0 0 L 13 1816 * * 2191 * 3832 * * * 3450 * * * 1577 * * * * * * 13 0 * * * * * * 2699 0 0 T 14 * * 2683 3257 * * * * 3940 * * * * 1715 1845 * 3450 * * * 14 0 * * * * * * 2699 0 0 M 15 * * * * * * * 3257 * 315 3450 * * * * * * * * * 15 0 * * * * * * 2699 0 0 T 16 3685 * * 4202 * * * * * * * 3940 3257 * * * 2004 1156 * * 16 0 * * * * * * 2699 0 0 D 17 3384 * 863 * * * * * * * * 2002 * * * 3257 * * * * 17 912 * 1093 * * * * 2699 0 0 T 18 1170 * * * * * * * * * * * 1408 * * * 2484 * * * 18 0 * * * * * 0 2349 0 1948 V 19 2818 * * * * 1021 * * * * * * * * * * 2423 2484 * * 19 0 * * * * 0 * 2349 0 1948 G 20 * * * * * 0 * * * * * * * * * * * * * * 20 0 * * * * * * 2699 0 0 Q 21 1575 * 1809 * * * * * * * * * 2740 3450 * 2860 * * * * 21 117 * 3685 * * * * 2699 0 0 V 22 * * * * * * * 3191 * 2757 3549 * * * * * 3315 845 * * 22 167 * 3191 * * * 0 2650 0 1000 V 23 3133 * * * * * * 3567 * * * * * * * * * 319 * * 23 0 * * * * 913 1093 2487 0 1516 L 24 * * * * * * * * * 3293 * * * 882 * 3206 2018 * * * 24 0 * * * * 0 * 2539 0 1000 G 25 2398 * 2519 2062 * 2724 * * * * * 3850 * * * 3647 * 3384 * * 25 145 * 3384 * * * * 2699 0 0 W 26 * * * * * * * * * * * * * * * * * * 645 1471 26 0 * * * * 0 * 2594 0 1000 K 27 * * * * * * * * 3450 * * * * * * * 285 3512 * * 27 0 * * * * * * 2699 0 0 V 28 * * * * * * * 2237 * * * * * * * * * 344 * * 28 0 * * * * * * 2699 0 0 S 29 * * * * * 3647 * * * * * * * * * 869 1424 * * * 29 0 * * * * * * 2699 0 0 D 30 * * 740 * * 3685 * * * * * 2191 * * * * 3257 * * * 30 0 * * * * * * 2699 0 0 L 31 * * * * * * * 3384 * 145 * * * * * * * * * * 31 0 * * * * * * 2699 0 0 K 32 3384 * * 3257 * * * * 1255 * * * * 2191 2629 * * * * * 32 0 * * * * * * 2699 0 0 S 33 4061 * * 3512 * * * * 3685 2510 * * 1193 * * 3450 * 3832 * * 33 0 * * * * * * 2699 0 0 S 34 * * * * * * * * * * * * * * * 0 * * * * 34 0 * * * * * * 2699 0 0 T 35 2720 * 3647 * * 3257 * * * * * 2845 * * * 1723 2174 * * * 35 0 * * * * * * 2699 0 0 A 36 2563 * 1254 * * * 3257 * * * * * * * * * * 1705 * * 36 159 * 3257 * * * * 2699 0 0 V 37 3370 * * * * * * * * * * * 2802 2430 * 3686 1695 2413 * * 37 0 * * * * * 0 2539 0 1000 I 38 3598 * * * * * * 604 * 1946 * * * * * * * * * * 38 0 * * * * * 0 2539 0 1000 P 39 3470 * * * * * * * * * * * 136 * * * * * * * 39 469 * 1848 * * * 0 2539 0 1000 G 40 * * * * * 241 * * * * * * * * * * 2703 * * * 40 241 * 2703 * * 482 1817 2409 0 1777 Y 41 * * * * * * * * * * * * * * * * * * * 0 41 0 * * * * 933 1070 2412 0 1480 P 42 2228 * * 2465 * * * * * 3470 * * 2438 3696 * * 1981 * * * 42 0 * * * * * 0 2539 0 1000 V 43 3370 * * * * * * * * 3598 * * 1287 * * * * 1283 * * 43 0 * * * * 0 * 2539 0 1000 A 44 2039 * * 3384 * * * * 2256 * * 3257 * 2898 2233 * * * * * 44 0 * * * * * * 2699 0 0 G 45 * * 3257 * * 159 * * * * * * * * * * * * * * 45 0 * * * * * * 2699 0 0 Q 46 * * * * * 3257 * * 3940 * * * * 1209 3756 * 1628 * * * 46 0 * * * * * * 2699 0 0 V 47 * * * * * * * * * 482 * * * * * * * 1817 * * 47 0 * * * * * * 2699 0 0 W 48 * * * * * * * * * * * * * * * * * * 545 1668 48 0 * * * * * * 2699 0 0 E 49 * * * 564 * * * * * * * * * 2845 * 3647 * * * 3257 49 0 * * * * * * 2699 0 0 A 50 268 * * * * * * * * * * * * * * 3257 * 3940 * * 50 0 * * * * * * 2699 0 0 T 51 * * 1627 * * * * * * * * * * * * 2596 969 * * * 51 0 * * * * * * 2699 0 0 A 52 564 * * * * * * 2845 * * * * * * * * * 2438 * * 52 0 * * * * * * 2699 0 0 T 53 * * * * * * * * * * * * * * * 2845 216 * * * 53 0 * * * * * * 2699 0 0 V 54 1978 * 2002 * * * * 3384 * * * * * * * * * 1319 * * 54 0 * * * * * * 2699 0 0 N 55 * * * 1534 * * * * * * * 2595 * * 1032 * * * * * 55 0 * * * * * * 2699 0 0 A 56 357 * * * * * * * * * * * * * * 2191 * * * * 56 0 * * * * * * 2699 0 0 I 57 * * 3840 2765 * * * 2174 3384 * * * * * * * * 1103 * * 57 0 * * * * * * 2699 0 0 R 58 3850 * * 3384 * 3840 * * * * * * * 2356 2563 2653 2050 * * * 58 0 * * * * * * 2699 0 0 G 59 * * * * * 0 * * * * * * * * * * * * * * 59 0 * * * * * * 2699 0 0 S 60 4061 * * * * * * * * 3850 * 3940 * * * 1641 1269 3840 * * 60 0 * * * * * * 2699 0 0 V 61 4061 * * * * * * 2666 * * * * 3257 * * * * 561 * * 61 0 * * * * * * 2699 0 0 T 62 * * * * * * * 3005 * * * * * * * * 192 * * * 62 0 * * * * * * 2699 0 0 P 63 * * * * * * * * * * * * 0 * * * * * * * 63 0 * * * * * * 2699 0 0 A 64 3450 * * * * * * 1568 * 2666 2845 3257 * * * * * 2558 * * 64 0 * * * * * * 2699 0 0 V 65 * * * * * * * 1539 * 3384 * * * * * * * 836 * * 65 0 * * * * * * 2699 0 0 S 66 2516 * * * * * 3840 * * * * 3850 2062 * * 1163 * * * * 66 0 * * * * * * 2699 0 0 Q 67 * * 2036 * * * * * * * * 774 * 3450 * 3647 * * * * 67 0 * * * * * * 2699 0 0 F 68 * * * * 502 * * * * 1767 * * * * * * * * * * 68 0 * * * * * * 2699 0 0 N 69 3685 * * * * * * 2845 * * * 687 * * 3756 * * * * 3512 69 0 * * * * * * 2699 0 0 A 70 239 * * * * * * * * * * * * * * * 3512 3940 * * 70 0 * * * * * * 2699 0 0 R 71 * * * * * * 3685 * 3832 * * * * * 535 * * 2629 * * 71 117 * 3685 * * * * 2699 0 0 T 72 1101 * * * * 2089 * * * * * * * * * * 1742 * * * 72 0 * * * * 0 * 2650 0 1000 A 73 676 * * * * * * * * * * 3832 2845 * 4061 * * 3257 * * 73 0 * * * * * * 2699 0 0 D 74 3512 * 1632 * * 3756 * * * * 3685 1191 * * * * * * * * 74 0 * * * * * * 2699 0 0 G 75 * * * * * 284 * * 3756 * * * * * * 3257 * * * * 75 0 * * * * * * 2699 0 0 I 76 * * 3647 1952 * 3685 * 3450 * * * * * 1632 * 3257 3940 * * * 76 0 * * * * * * 2699 0 0 N 77 * * * * * * 3685 * * * * 1514 * * 3512 2558 1668 * * * 77 0 * * * * * * 2699 0 0 Y 78 * * * * * * * * * * * * * * * * * * * 0 78 0 * * * * * * 2699 0 0 R 79 3257 * * * * 3647 * * * * * * 2062 3384 1058 * * * * * 79 0 * * * * * * 2699 0 0 V 80 2179 * * * * * * * * * * * * * * * * 360 * * 80 0 * * * * * * 2699 0 0 L 81 * * * * * * * 2845 * 784 3257 * * * * * * 2510 * * 81 159 * 3257 * * * * 2699 0 0 W 82 * * 2675 * 2904 * * * * * * 3470 * * * * * * 1204 2430 82 0 * * * * 0 * 2539 0 1000 Q 83 * * * 2510 * 3832 * * 2523 * * 3840 * 970 * * * * * * 83 0 * * * * * * 2699 0 0 A 84 3450 * * * * 3257 * 2629 * * * * * * * * * 639 * * 84 0 * * * * * * 2699 0 0 A 85 621 * 3257 * * 3850 * * * * * * 2510 * * * * * * * 85 0 * * * * * * 2699 0 0 G 86 2510 * * * * 3450 * * 3257 * * * * * * 2108 1615 3840 * * 86 0 * * * * * * 2699 0 0 P 87 2942 * 3685 * * * * * * * * * 522 * * 3384 * * * * 87 0 * * * * * * 2699 0 0 D 88 3756 * 2350 3384 * 3647 * * * * * 2845 * 1269 * * * * * * 88 0 * * * * * * 2699 0 0 T 89 * * * * * 138 * * * * * * * * * * 3450 * * * 89 145 * 3384 * * * * 2699 0 0 I 90 * * * * * * * 2464 * 888 * * * * * * * 1844 * * 90 0 * * * * 0 * 2594 0 1000 S 91 * * * * * * * * * * * 1234 1539 * * 2116 * * * * 91 0 * * * * * * 2699 0 0 G 92 2062 * * * * 3450 * * * * * 3257 825 * * * * * * * 92 0 * * * * * * 2699 0 0 A 93 1379 * * 3384 * 3832 * * * * * * * 3257 * 2479 2596 * * * 93 0 * * * * * * 2699 0 0 T 94 * * * * * * * * * * * * 1254 * * * 784 * * * 94 0 * * * * * * 2699 0 0 I 95 * * * * * * * 1412 * 680 * * * * * * * * * * 95 0 * * * * * * 2699 0 0 P 96 2278 * * * * 2760 * * * 3647 * * 1757 * * 3832 2319 * * * 96 0 * * * * * * 2699 0 0 Q 97 3257 * * 1937 * * * * * * * * 4202 786 * * * * * * 97 0 * * * * * * 2699 0 0 G 98 * * * * * 0 * * * * * * * * * * * * * * 98 0 * * * * * * 2699 0 0 E 99 3384 * * 2140 * * * * * * * 3647 * 1499 * 2523 3840 * * * 99 0 * * * * * * 2699 0 0 Q 100 3512 * * 2328 * * * * 2398 * * * * 2350 * 1611 * * * * 100 0 * * * * * * 2699 0 0 S 101 3940 * * * * * * * * * * * * 3647 * 1089 1378 * * * 101 0 * * * * * * 2699 0 0 T 102 * * * * * * * * * * * * * * * 1379 700 * * * 102 0 * * * * * * 2699 0 0 G 103 * * * * * 0 * * * * * * * * * * * * * * 103 0 * * * * * * 2699 0 0 K 104 3512 * * * * * * * 969 * * * * * 3257 * 2205 3647 * * 104 0 * * * * * * 2699 0 0 I 105 * * * * * * * 1009 * 1502 * * * * * * * 2736 * * 105 0 * * * * * * 2699 0 0 Y 106 * * * * * * * * * * * * * * * * * * * 0 106 0 * * * * * * 2699 0 0 F 107 * * * * 0 * * * * * * * * * * * * * * * 107 0 * * * * * * 2699 0 0 D 108 * * 0 * * * * * * * * * * * * * * * * * 108 0 * * * * * * 2699 0 0 V 109 3512 * * * * * * * * * * * * * * * * 132 * * 109 0 * * * * * * 2699 0 0 T 110 * * * * * * * * 3384 * * * * * 3257 * 490 3512 * * 110 159 3257 * 0 * * * 2699 1000 0 G 111 * * * * * 0 * * * * * * * * * * * * * * 111 0 * * * * * * 2699 0 0 P 112 1893 * * 2736 * * * * * * * * 1315 * * * 2485 * * * 112 0 * * * * * * 2699 0 0 S 113 1973 * 2720 3940 * * * * * * * 3832 2191 2760 * 3450 * * * * 113 0 * * * * * * 2699 0 0 P 114 * * * * * * * * * * * * 0 * * * * * * * 114 0 * * * * * * 2699 0 0 T 115 3756 * 1942 3832 * * * * * * 3512 2191 * * * * 2245 3685 * * 115 0 * * * * * * 2699 0 0 I 116 2596 * * * * 2191 * 3450 * * * * * * * 1581 2398 * * * 116 0 * * * * * * 2699 0 0 V 117 * * * * * * * * * * * * * * * * * 0 * * 117 0 * * * * * * 2699 0 0 A 118 3450 * * * * * * * * * * * * * * * 3832 254 * * 118 0 * * * * * * 2699 0 0 M 119 * * * * * * * * * * 3450 * * * * * * * * 138 119 111 3756 * 0 * * * 2699 1000 0 N 120 * * 3512 * * * * * * * * 1029 * * 3257 2558 2756 * * * 120 0 * * * * * * 2699 0 0 N 121 2845 * 906 * * * * * * * * 2481 * * * 3832 * 3685 * * 121 159 3257 * 0 * * * 2699 1000 0 G 122 * * * * * 145 * * * * * * * * * * * 3384 * * 122 117 3685 * 0 * * * 2699 1000 0 M 123 * * 3832 4202 * 1310 * * * * 2116 * * * * 3756 3512 3647 * * 123 0 * * * * * * 2699 0 0 E 124 3685 * * 2629 * * * * 2845 * * * 3512 1842 4202 3384 3257 * * * 124 0 * * * * * * 2699 0 0 D 125 * * 395 * * * * * * * * * 2720 * * * 3512 * * * 125 0 * * * * * * 2699 0 0 L 126 3685 * * 3384 * * * * 3257 1268 * * * 3512 * * * 2191 * * 126 0 * * * * * * 2699 0 0 L 127 * * * * * * * * * 626 2720 * * * * * * 2319 * * 127 0 * * * * * * 2699 0 0 I 128 4202 * * * 3512 * * 1572 * 4061 2174 * * * * * 3832 2558 * * 128 0 * * * * * * 2699 0 0 W 129 * * * * * * * * * * * * * * * * * * 0 * 129 0 * * * * * * 2699 0 0 E 130 * * 2148 1931 * * * * 965 * * * * * * * * * * * 130 0 * * * * * * 1950 0 0 P 131 * * * * * * * * * * * * 0 * * * * * * * 131 0 * * 0 * * * 1000 0 0 //