HHsearch 1.5 NAME d1l0lh_ FAM FILE d1l0lh_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1l0lh_.a3m DATE Mon Mar 8 23:39:22 2010 LENG 78 match states, 78 columns in multiple alignment FILT 57 out of 61 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.3 EVD 0.4392 -0.0483 SEQ >ss_dssp CCSHHHHHHHHSCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHGGGSCC >sa_dssp EEEEDEEDDEEEEEDDDEDBDEDBCEDEEADDBCDEBEEBEEDCEEEEEEEDECDECDEDBCECBDECBEEECEEEDE >ss_pred CCCCCCCCCHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCC >ss_conf 988733250320348569999985155555899999999999862477886577999999999996201489997559 >Consensus xxxxxxxxxeeexVDpxxxlrexCxxxxxCxxxxxxyxxCxeRVxsxxxxxExCxeExfdxxhCvDxCvapkLFxxLK >d1l0lh_ GDPKEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHKLFNSLK >UniRef50_Q7S035(75-141:141) Predicted protein n=3 Tax=Sordariomycetes RepID=Q7S035_NEUCR E=5e-14 s/c=1.17 id=36% cov=86% ------------IVDPKETLEEECRNSKECAPAKHHYDECAARVTGaGADNKEDCVEEFFHLVHCATQCAAPKLWNTLK >UniRef50_B0DXR3(43-127:127) Predicted protein n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0DXR3_LACBS E=0.0001 s/c=0.56 id=37% cov=83% --------------DLHPVIREECKESSKCAALAKHFEHCQEKVQAGQGFKgEDCVEELvesvfskrltqacpslstspVHMMHCVDDCAAPKLFSKLR >UniRef50_Q4CT35(4-71:71) Ubiquinol-cytochrome-C-reductase, putative n=2 Tax=Trypanosomatidae RepID=Q4CT35_TRYCR E=4e-07 s/c=0.82 id=28% cov=87% ----------EDPQDIKLELEKEC-LANDCNHKVLAYNGCLERIKSVPPEKEpHCYHHYFDIIHCVDVCVDPKLWPTLK >UniRef50_C4QDJ2(2-68:68) Expressed protein n=4 Tax=Platyhelminthes RepID=C4QDJ2_SCHMA E=3e-10 s/c=0.99 id=43% cov=86% ---------DEEAVDPLDTLRKEARVSHHCSPFLKKLEECGDR---QSRTKESCEEELVDLLGCVDHQVAKTIFSVLK >UniRef50_A8P2D7(96-176:176) Ubiquinol-cytochrome C reductase hinge protein n=2 Tax=Chromadorea RepID=A8P2D7_BRUMA E=4e-16 s/c=1.06 id=42% cov=99% GDNDEVETqpltvDEEEVMDSLIKFREEC--IAHTGKWKKLLDECTERVNSKAKTKESCHYEMVDYIQALDHCAMPKAFAALK >UniRef50_C1BSF9(26-90:90) Cytochrome b-c1 complex subunit 6, mitochondrial n=1 Tax=Lepeophtheirus salmonis RepID=C1BSF9_9MAXI E=7e-11 s/c=1.05 id=39% cov=85% ------------LVDPAVEIKERCK-TQACTSYVTRLETCNDRVNSKSKTSETCLEEIMDLVHCIDHCASPQVIKLCK >UniRef50_D1HAJ1(42-110:110) Whole genome shotgun sequence of line PN40024, scaffold_72.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1HAJ1_VITVI E=1e-17 s/c=1.31 id=37% cov=87% ---------DEEPVDPKKYLEESCK--PKCVRYLRAYEACENRVKEDETGHKHCTGQYFDYWSCVDKCVAPRLFTKLK >UniRef50_UPI000186D4FB(17-91:91) ubiquinol-cytochrome c reductase complex 11 kDa protein, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186D4FB E=1e-13 s/c=1.03 id=42% cov=97% --PVVKADDLDETSDPQVHLRHQCQNG-ECAKWYDKLEECNERVTSRTKTAESCHEEMIDFVNCLDHCVSKDLFSKLK >UniRef50_Q8ILJ5(14-87:88) Ubiquinol-cytochrome c reductase hinge protein, putative n=6 Tax=Plasmodium RepID=Q8ILJ5_PLAF7 E=5e-13 s/c=1.02 id=34% cov=95% --PKFKERDEKDrTVDPRIELEKKCAV--KCVRPVNEYQNCVSRVRARTDNKGNCLGQYEELYICIDHCVAKDLFNYL- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1817 0 0 D 2 * * 231 * * * * * * * * * * * * 2755 * * * * 2 0 * * * * * * 2020 0 0 P 3 * * 2134 * * 3587 * * * * * 3047 816 * * * * * * * 3 138 3459 * 1000 1000 * * 2717 1000 0 K 4 * * 2292 3459 * * * * 2017 * * 3102 3167 * * * 3223 3025 * * 4 0 * * * * * * 2717 0 0 E 5 * * * 847 2639 * * * * * * * 3718 * * * * 2269 * * 5 0 * * * * * * 2712 0 0 E 6 * * * 1641 * * * * 982 * * * * * * 3664 * 3411 * * 6 0 * * * * * * 2785 0 0 E 7 2605 * 3686 742 * * * * * * * * 3798 * * * 3506 * * * 7 0 * * * * * * 2812 0 0 E 8 * * 2687 1337 * * * * * * * * * 2014 3041 * 3649 * * * 8 254 2629 * 2165 364 * * 2922 1222 0 E 9 * * 1503 1160 * * * * * * * * 3779 4344 * 3689 * * * * 9 0 * * * * * * 3146 0 0 E 10 * * 1531 863 * * * * * 3266 * * * * * * * * * * 10 0 * * * * * * 3578 0 0 E 11 5095 * 3546 392 * 4284 * * 3803 * * * * * * * * * * * 11 0 * * * * * * 3848 0 0 E 12 3986 * 1505 874 * * * * * * * * * * 4677 * * * * * 12 50 4881 * 0 * * * 3864 1000 0 L 13 4872 * 5070 * * * 5097 3576 * 1551 4232 * 2637 * * * 4350 2434 * 4894 13 0 * * * * * * 4267 0 0 V 14 * * * * * * * * 5114 * 5160 * * 4711 * 5255 3751 314 * * 14 0 * * * * * * 4271 0 0 D 15 * * 0 * * * * * * * * * * * * * * * * * 15 0 * * * * * * 4383 0 0 P 16 5117 * * * * * 5395 3316 * 5086 * * 656 2786 * 5498 * 6003 * * 16 0 * * * * * * 4315 0 0 L 17 4240 * * * * * 5126 5890 2116 1267 3374 * * 3674 3636 * * * * * 17 0 * * * * * * 4348 0 0 T 18 4499 * 2360 2463 * * * 3892 3554 4171 * 6210 2642 5458 5728 * 3429 3979 * * 18 0 * * * * * * 4360 0 0 T 19 2565 * 3558 3108 * 5455 4532 * 2717 * * 6221 * 4058 * 5782 3074 3228 * 3397 19 0 * * * * * * 4360 0 0 V 20 * * * * 3795 * * 2559 * 675 4327 * * * * * * 4088 * 5431 20 0 * * * * * * 4416 0 0 R 21 * * * 1956 * * * * 2816 5195 * * * 5172 1002 * 4444 * * * 21 0 * * * * * * 4416 0 0 E 22 4057 * 4576 705 * * 5883 * 2897 * * * 3576 4852 * * * 6073 * * 22 0 * * * * * * 4560 0 0 Q 23 4683 * * 1627 * 4348 4629 * 2450 * * 5815 6627 4129 3280 2905 5594 5460 * * 23 0 * * * * * * 4560 0 0 C 24 5246 81 * * 5147 * * * * * * * * * * * * * * * 24 368 * 2152 * * * * 4560 0 0 E 25 2543 * * 2242 * 3335 * * 2002 * 3994 * * 3631 3547 5684 5665 * * * 25 359 * 2184 * * 2243 342 4158 0 3004 Q 26 4234 * 4937 2922 * 5111 5497 * 3304 3554 * 2111 * 2914 5393 3645 * 3702 * * 26 61 * 4600 * * 936 1067 4088 0 3417 L 27 2073 * * * * 4051 4930 4715 3795 3652 * 5440 * 5250 * 1942 2556 * * * 27 90 * 4051 * * 526 1711 4401 0 2545 E 28 2529 * 5273 2795 * 3977 5135 * 3144 * * 3653 1871 5014 * 4618 * 5205 * * 28 30 * 5600 * * 996 1004 4417 0 2329 K 29 3858 * 3888 2400 * * 1951 * 1937 * * * * 3895 5447 4946 6090 5876 * * 29 0 * * * * 0 * 4320 0 2078 C 30 3729 314 * * * 5254 * 4248 * * * * * * * * 5740 5453 * * 30 0 * * * * * * 4578 0 0 V 31 2179 * * 4348 * 5740 5689 5834 2850 5633 * 5200 4435 5571 * 2887 3837 2211 * * 31 0 * * * * * * 4578 0 0 K 32 2919 * 5689 2779 * * 3123 * 2250 5556 * 5639 2736 3754 4485 3888 * * * * 32 0 * * * * * * 4578 0 0 A 33 3407 * * 5478 3434 * 5686 * 4247 2236 5972 * 3671 4872 5571 4348 4134 5558 3203 3049 33 0 * * * * * * 4578 0 0 R 34 5522 * 5988 * 4169 4592 * * 2164 2369 5922 5569 * 5972 3512 * 5051 2375 4222 5011 34 0 * * * * * * 4578 0 0 E 35 4093 * 4368 2484 * 5297 2239 5786 2689 3802 * 3527 * * 6196 4321 4165 * * 5267 35 0 * * * * * * 4578 0 0 R 36 3115 * 6308 2185 * * 1979 5453 2368 4467 * * * * 3503 * * 5478 5278 * 36 0 * * * * * * 4578 0 0 L 37 * * * * 2432 * * * 5278 1591 * * * * * * * * * 1130 37 0 * * * * * * 4578 0 0 E 38 4758 * 2261 1672 * * 5033 * 5278 * 5159 2906 * 2413 * 6146 5569 * * * 38 0 * * * * * * 4578 0 0 L 39 1810 * 6284 1373 * 5200 4027 5278 4557 5409 * 5020 * 5183 * * 4489 4934 * * 39 0 * * * * * * 4578 0 0 C 40 * 0 * * * * * * * * * * * * * * * * * * 40 0 * * * * * * 4578 0 0 D 41 4706 * 5409 3475 * 5350 * 4361 * 3745 * 2233 * 4602 * 4542 3131 1923 5278 * 41 0 * * * * * * 4578 0 0 E 42 3750 * 2033 1443 * 5201 * * 2991 * * 4457 * 5204 * 5082 4097 * * * 42 38 5278 * 2000 415 * * 4578 1000 0 R 43 * * * * * * * * 4027 * * * * * 91 * * * * * 43 36 * 5350 * * * * 4578 0 0 V 44 * * * * * * * 2770 * * * * * * * * 5770 260 * * 44 23 5962 * 0 * * 0 4558 1000 1000 S 45 5191 * * 3242 * 4471 6042 * 2608 * * 1902 * 4442 4080 3600 2416 * * * 45 88 4081 * 3000 193 * 0 4558 1338 1000 S 46 2360 * * 6177 * 3227 * * 2661 5313 5194 * * * 5123 1288 5279 6618 * * 46 136 3854 5591 2270 335 0 * 4558 1812 1000 R 47 * * 2819 4336 * 4214 5677 * 2007 5189 * 6252 * 4267 1562 * * 4175 * * 47 91 4039 * 2108 381 * 0 4573 1599 1000 S 48 3845 * 4548 3352 * 3094 * 5255 3853 4652 * * 5096 4353 * 1522 3169 * * * 48 19 * 6282 * * 0 * 4566 0 1000 Q 49 5537 * 2483 3128 5979 4586 3646 * 2902 5635 * 4099 3809 3835 5336 3492 4741 5496 * 5571 49 29 5673 * 0 * 0 * 4577 1000 1000 T 50 5587 * 3901 3864 5517 2335 4598 * 5552 * * 4289 5683 * * * 1228 * * 3979 50 58 4658 * 2585 263 * * 4571 1219 0 E 51 3778 * * 2324 * 4826 3233 * 1669 5990 * * * 4505 3926 3783 3771 * * * 51 65 5517 5504 0 * * * 4571 1000 0 E 52 * * * 413 * 3132 * * 2891 * * * * * * * * * * * 52 126 3576 * 0 * * 0 4548 1643 1000 D 53 * * 1670 5732 * * 2468 * * * * 2627 * * * 3497 2085 * * * 53 0 * * * * 0 * 4548 0 1000 C 54 * 0 * * * * * * * * * * * * * * * * * * 54 0 * * * * * * 4571 0 0 T 55 5010 * 5504 4486 * * 3546 3726 5310 3774 4539 * * 4437 * 4537 2132 2123 * 4241 55 0 * * * * * * 4571 0 0 E 56 5644 * * 787 * 2032 5198 * * * * 5284 * 4124 * * * * * 4449 56 0 * * * * * * 4571 0 0 E 57 * * * 551 * * 5198 * * * * * * 1888 * * * * 5644 * 57 0 * * * * * * 4571 0 0 L 58 * * * * 1599 * * 5122 * 1783 3546 * * * * * * * * 1917 58 63 4552 * 4039 91 * * 4571 1384 0 L 59 5444 * * 3445 734 * * 4928 * 3838 5122 * * * * 5760 5587 3438 5568 * 59 0 * * * * * * 4571 0 0 D 60 5284 * 743 3069 * * 1957 * * * * * * * * * * * * * 60 0 * * * * * * 4571 0 0 F 61 * * * * 2135 * 5195 3788 * 1417 5517 * * * * * * * * 1856 61 0 * * * * * * 4571 0 0 L 62 4189 * * 6064 5891 * 5515 3776 * 1660 4796 * * 3280 * * 4630 2500 3554 4035 62 0 * * * * * * 4571 0 0 H 63 6129 * * 4754 * 4742 694 5873 5466 * 5174 5889 * 3204 * 3878 * 5515 * 6549 63 0 * * * * * * 4571 0 0 A 64 3135 531 * 3750 * * 4791 * * * * * * * 5561 * * 5568 * 4598 64 0 * * * * * * 4571 0 0 R 65 3375 * * * * * * 2098 * 2485 * * * 3842 3279 5627 * 1745 * * 65 0 * * * * * * 4571 0 0 D 66 * * 291 * * 5587 * * * * * 4314 * 5984 4508 * 4271 * * * 66 0 * * * * * * 4571 0 0 H 67 4851 * 3420 4937 * 6062 1198 * 2508 * * 5466 * 4771 4641 4880 5247 4241 * * 67 30 5587 * 4322 74 * * 4571 1000 0 C 68 5247 105 * * * * * * * * * 5681 * 5343 * * * * * * 68 0 * * * * * * 4571 0 0 V 69 1830 * * * * * * 5144 * 5550 5041 * * * * 5489 4011 851 * * 69 0 * * * * * * 4555 0 0 A 70 743 * 3711 * * 5178 * * * * 3433 * * * * 2891 4351 5485 * * 70 0 * * * * * * 4553 0 0 H 71 6014 * 5678 5544 * * 2825 * 2256 * * * 805 5585 * * * * * * 71 0 * * * * * * 4444 0 0 K 72 * * 3107 4174 * * * * 968 * * * * 3501 3787 4289 3247 * * * 72 0 * * * * * * 4445 0 0 L 73 3510 * * * * * * 2881 * 549 5956 * * * * * * 3699 * * 73 0 * * * * * * 4445 0 0 F 74 * * * * 292 * * 5102 * 4791 5471 * * * * * * * 3387 * 74 0 * * * * * * 4445 0 0 N 75 2335 * 3406 5853 * * 4010 * 1954 * * 3728 4169 * 4362 2816 4938 * * 5988 75 0 * * * * * * 4445 0 0 S 76 4452 * * 4189 * * 3243 * 1510 5102 * 4931 * 4354 4968 4334 3400 3929 * 3475 76 0 * * * * * * 4445 0 0 L 77 * 5102 * * * * * * * 113 5235 * * * * * * 5671 * * 77 0 * * * * * * 4445 0 0 K 78 * * * * * * * * 50 * * * * * 4865 * * * * * 78 0 * * 0 * * * 4408 0 0 //