HHsearch 1.5 NAME d1kwia_ FAM FILE d1kwia_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1kwia_.a3m DATE Mon Mar 8 21:18:10 2010 LENG 85 match states, 85 columns in multiple alignment FILT 21 out of 25 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.1 EVD 0.4599 1.9247 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHCCSSEEEEEEEECCCCEEEEEEEEEEEEESSCCSCGGGSCBCTTCCEEEEEEEECCCCCEEEEEECC >sa_dssp EDCCDDBADDBBDDBBEECECECBBCCDEDDEEDDEBCABBBCAECDDEDEDDBEEAECDEEBDCCCADDCBDCEECDBECEDEE >ss_pred CCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCHHHCCCCCCCEEEEEEEEEEEEEEEEEECCCC >ss_conf 9659999999999972378786515654068887403789861225860118964566423887652344167400475525889 >Consensus xLsYxeaVxxAvxxyNqxxxxxnlfRLlexxpxpxplxFtIkETvCpxxxxrxpxxCdFkExGxvkxCxGtvxlxxxdlsCxxxx >d1kwia_ ALSYREAVLRAVDRLNEQSSEANLYRLLELDGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDPLDITCNEVQ >UniRef50_Q2IAL7(22-103:154) Cathelicidin-2 n=15 Tax=Phasianidae RepID=CTHL2_CHICK E=3e-08 s/c=0.73 id=43% cov=87% -LSYPQALIQAVDSYNQRPEVQNAFRLLSADPEPGPgvdlstlraLNFTIMETECTPSARLPVDDCDFKENGVIRDCSGPVSV----------- >UniRef50_B8R7Q8(26-123:169) Cathelicidin n=1 Tax=Macropus eugenii RepID=B8R7Q8_MACEU E=5e-23 s/c=1.10 id=38% cov=100% SLSYQQTLSTAIHFYNEVHRGENAFRLLQIyspspnqgphEQTLKRLNFTLKETVCPTTEELLLDQCDFKTDGLLKECQGSVSneqgIAAIILTCDPV- >UniRef50_UPI0000F2DF1C(29-122:150) PREDICTED: similar to pre-protein PR39 n=1 Tax=Monodelphis domestica RepID=UPI0000F2DF1C E=8e-23 s/c=1.15 id=42% cov=98% -LNYQNAVTEFIREYNSNIRSGNLFRLSVLtlppgegnNPTLSPVSFTITETVCQKEDGRDPEECDFKDNGMVKECFGVIRLEftkpIVDVSCDG-- >UniRef50_B1NLP0(33-127:175) Cathelicidin 3 (Fragment) n=4 Tax=Macropus eugenii RepID=B1NLP0_MACEU E=2e-22 s/c=1.12 id=43% cov=98% --RYQDLVNGFIEEYNRKSGSENLFRLSILNlppeesndpAVPRLLRFTIRETVCPKTENRNADECDFKENGLVKECIGMVDLDssnPSDsISCDGV- >UniRef50_UPI0001555825(21-116:177) PREDICTED: similar to myeloid cathelicidin 3, partial n=2 Tax=Ornithorhynchus anatinus RepID=UPI0001555825 E=2e-22 s/c=1.10 id=45% cov=100% SLSYEEAVVAAVTEYNRESDADALFWLLELKPQERplesrkaiPVNFTIQETVCPKVENRSPDQCDFKEGGVVRNCSGTVLPTQeapvVTLTCDRP- >UniRef50_B6D434(28-123:191) Cathelicidin-BF n=3 Tax=Elapidae RepID=B6D434_BUNFA E=8e-19 s/c=0.99 id=44% cov=99% -LIYEEAVDLAVSIYNSKSGEDSLYRLLEAVSPPKwdplsesnqELNFTMKETVCLVAEERSLEECDFQEDGVVMGCTGYYFFGEsppvVVLTCKPV- >UniRef50_UPI00017F0651(24-109:177) PREDICTED: similar to neutrophilic granule protein n=1 Tax=Sus scrofa RepID=UPI00017F0651 E=7e-14 s/c=0.91 id=35% cov=91% SLSYEEIINKALWFFNQGRPGQRLFRLLVAIPPPnlnfttnIPLNFRIKETVCFSTRfhlHRQPRKCAFREGGEERNCNGTFFMLP--------- >UniRef50_UPI0001554E14(140-228:271) PREDICTED: similar to myeloid bactenecin (F1) n=1 Tax=Ornithorhynchus anatinus RepID=UPI0001554E14 E=4e-19 s/c=1.08 id=39% cov=94% ---YREAVSLALDAYNRGLTGSSAFRLLEPSQlkpdlPRGHLKFKIKETVCPVAEKCQQRECDFKEDGLERDCSG-IFLAPSDtrimvLSCRP-- >UniRef50_Q5F378(119-209:251) Cathelicidin-B1 n=1 Tax=Gallus gallus RepID=CTHB1_CHICK E=1e-15 s/c=0.92 id=35% cov=94% -ITYLDAILAAVRLLNQKISGPCILRLREAQPRPgwvgtlqrrREVSFLVEDGPCP-----PGVDCRSCEPGALQHCVGTVSIEQqptAELRCRPLR # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 1128 * * * * * * * * * * * * * * 883 * * * * 1 0 * * * * * * 2177 0 0 L 2 * * * * * * * 3079 * 182 * * * * * * * * * * 2 0 * * * * * * 3016 0 0 S 3 * * * * * * * 4052 * * * 3863 * * 2545 749 3256 * * * 3 0 * * * * * * 3128 0 0 Y 4 * * * * * * * * * * * * * * * * * * * 0 4 0 * * * * * * 3214 0 0 R 5 * * * 1681 * * * * 3979 3338 * * 4084 2003 2202 * * * * * 5 0 * * * * * * 3214 0 0 E 6 * * 2165 858 * * * * * * * 3980 * 2625 * * * * * * 6 0 * * * * * * 3214 0 0 A 7 609 * * * * * * 2715 * 4203 * * * * * * 4037 3702 * * 7 0 * * * * * * 3214 0 0 V 8 * * * * * * * 2741 * 2750 * * * * * * * 511 * * 8 0 * * * * * * 3214 0 0 L 9 4377 * 3271 * * * * 4084 * 1623 * 2903 * 4564 * 3109 3071 4215 * * 9 0 * * * * * * 3214 0 0 R 10 2711 * * 3980 * 4203 * * 4302 3150 * * * 2619 1545 * 4037 * * * 10 0 * * * * * * 3214 0 0 A 11 228 * * * 2772 * * * * * * * * * * * * * * * 11 0 * * * * * * 3214 0 0 V 12 * * * * * * * 1805 * 2255 * * * * * * * 988 * * 12 0 * * * * * * 3214 0 0 D 13 * * 1388 3319 * * 4037 * 4167 * * * * 3702 2624 4117 4215 * 4302 * 13 0 * * * * * * 3214 0 0 R 14 3309 * 4606 2320 2215 3242 * 4117 * 3338 * * * 3495 4942 4084 * * * * 14 0 * * * * * * 3214 0 0 L 15 * * * * 2509 * * 3732 * 2169 * * * * * * * * * 925 15 0 * * * * * * 3214 0 0 N 16 * * * * * * * * * * * 0 * * * * * * * * 16 0 * * * * * * 3214 0 0 E 17 * * * 2119 * * * * 4564 * * * * 1270 2616 3047 5122 * * * 17 0 * * * * * * 3214 0 0 Q 18 * * * 4215 * 1969 * * 1916 * * 3243 * 3764 2688 * * 4037 5037 * 18 62 4564 * 0 * * * 3214 1000 0 S 19 4564 * * * * * 4037 2624 * 4185 * * 4084 4377 2715 1251 * * * * 19 0 * * * * * * 3214 0 0 S 20 * * 3379 3511 * 3159 * * * 4606 * * 4302 3410 2475 1819 4185 * * * 20 0 * * * * * * 3214 0 0 E 21 4215 * 3258 2483 * 1268 * * * * * 4564 * * * 2772 * 4084 * * 21 0 * * * * * * 3214 0 0 A 22 2697 * 3165 2207 * 3980 * * * * * * 3338 2228 4444 4185 4606 * * * 22 0 * * * * * * 3214 0 0 N 23 4215 3338 * * * * * * * * * 984 3410 * 3233 2823 * * * * 23 0 * * * * * * 3214 0 0 L 24 2516 * * * * * * 2694 * 576 * * * * * * * * * * 24 0 * * * * * * 3214 0 0 Y 25 * * * * 695 * * * * 3338 * * * * * * * * * 1819 25 0 * * * * * * 3214 0 0 R 26 * * * * * 4167 * * * * * * * * 167 * * * 4215 * 26 0 * * * * * * 3214 0 0 L 27 * * * * * * * * * 0 * * * * * * * * * * 27 0 * * * * * * 3214 0 0 L 28 * * * * * * * * * 406 * * * * 3338 2772 * * * * 28 0 * * * * * * 3214 0 0 E 29 * * 3755 941 * * * 4203 * * * * * 4037 * 2764 * 2808 * * 29 0 * * * * * * 3214 0 0 L 30 1473 * * * * * * 4037 * 1207 * * 3475 * * 4167 * * * * 30 191 3008 * 3169 170 * * 3214 1552 0 D 31 * * 1776 4037 * * * 4302 4215 * * 2772 * 3338 * 3475 2740 4117 * * 31 174 3561 5122 3170 170 * * 3214 1422 0 G 32 4053 * 5008 * * 4917 * * * * * * 613 3065 * 4089 4528 * * * 32 278 2512 * 2951 200 * 0 3210 1875 1000 T 33 * * * 4024 * * * * * * * * 1390 4199 3329 4528 1740 4053 * * 33 165 3211 * 3182 168 * 0 3210 1575 1000 P 34 * * * 4199 * * * * * 2933 * 4428 565 * 3442 * * * * * 34 388 2084 * 3029 189 * 0 3210 2020 1000 K 35 * * * * * 3084 * 2699 1340 * * * * * 2223 3075 * * * * 35 258 2609 * 3013 191 * 0 3210 1735 1000 P 36 4816 * * 2659 * * 4145 * * 4053 * * 774 * 3989 4579 * * * * 36 91 4024 * 3170 170 * 0 3210 1000 1000 V 37 * * * * * * * * * 987 * * * * * * * 1014 * * 37 0 * * * * * 0 3210 0 1000 S 38 * * * * * * * * 4145 * * 1337 * 4428 3292 1326 * * * * 38 0 * * * * * 0 3210 0 1000 F 39 * * * * 0 * * * * * * * * * * * * * * * 39 0 * * * * * 0 3210 0 1000 T 40 * * * * * * * * 4145 3329 * * * * 1570 * 980 * * * 40 0 * * * * * 0 3210 0 1000 V 41 * * * * * * * 866 * 3989 4089 * * * * * * 1602 * * 41 0 * * * * * 0 3210 0 1000 K 42 * * * 3329 * * * * 608 * 4024 * * 4199 4053 * 3878 * * * 42 0 * * * * * 0 3210 0 1000 E 43 * * 3329 151 * * * * * * * * * * * * * * * * 43 0 * * * * * 0 3210 0 1000 T 44 * * * * * 3329 * * * * * * * * * * 151 * * * 44 0 * * * * * 0 3210 0 1000 V 45 * * 5117 3212 * * * * * * * * 3329 * * * * 389 * * 45 0 * * * * * 0 3210 0 1000 C 46 * 0 * * * * * * * * * * * * * * * * * * 46 83 4160 * 0 * * 0 3210 1000 1000 P 47 * * * * 4275 4579 * 4303 * 3124 * * 938 3878 * * 2725 * * * 47 151 * 3329 * * * 0 3210 0 1000 R 48 * * * * 4115 * * * 1749 4009 * * 3906 * 2225 3168 3887 3023 * * 48 0 * * * * * 0 2965 0 1427 P 49 2547 * * 3748 * * * * * * 4327 * 3689 * * 3906 1184 4103 4009 * 49 0 * * * * * 0 2965 0 1427 T 50 3906 * 3748 1458 * * * * * 3217 * * * 4208 4130 3263 3188 * * 4009 50 85 4130 * 1585 585 * 0 2965 1000 1427 R 51 * * 4115 2449 * 3748 4130 * 4020 4655 * 2997 * 2425 2219 * * * * * 51 0 * * * * 1485 637 2965 0 1427 Q 52 * 4062 * * * * * * * 2631 * * * 1978 930 * * * * * 52 0 * * * * 0 * 3006 0 1000 P 53 * * 3980 * * * * * * 3294 * 4203 1494 2324 4167 2557 * * * * 53 0 * * * * * * 3214 0 0 P 54 4203 * * * * 3338 * * * 2188 * * 962 4185 * * * 4084 * * 54 0 * * * * * * 3214 0 0 E 55 * * 2133 1259 * 4377 * * 4444 * * * * * 2632 * * 3338 * * 55 0 * * * * * * 3214 0 0 L 56 * * 2079 1949 * * * * 4302 4942 * 4377 * 1423 * * * * * * 56 42 * 5122 * * * * 3214 0 0 C 57 * 0 * * * * * * * * * * * * * * * * * * 57 0 * * * * * 0 3210 0 1000 D 58 2794 * 514 * * * * * * * * * 4160 * 3329 * * * * * 58 0 * * * * * 0 3210 0 1000 F 59 * * * * 151 * * * * * * * * * * 3329 * * * * 59 0 * * * * * 0 3210 0 1000 K 60 * 3329 * * * * * * 651 4428 * * * 4089 2660 * * * * * 60 0 * * * * * 0 3210 0 1000 E 61 * * 3878 259 * * * * 4895 * * * * * * * 3989 * * * 61 0 * * * * * 0 3210 0 1000 N 62 * * 2239 * * 2233 * * * * * 1204 3329 4579 * * * * * * 62 0 * * * * * 0 3210 0 1000 G 63 * * * * * 0 * * * * * * * * * * * * * * 63 0 * * * * 0 * 3210 0 1000 R 64 3338 * * 2319 * * * * * 1346 3980 * * * 4942 * * 2241 * * 64 0 * * * * * * 3214 0 0 V 65 * * * 1969 * * * 4084 * 2432 4838 * * * * * * 1103 * * 65 0 * * * * * * 3214 0 0 K 66 * * * * * * * * 1208 * 4117 * * 2825 1441 * * * * * 66 0 * * * * * * 3214 0 0 Q 67 * * 3133 2293 * 4117 3338 4377 * * * 2279 * 2351 3732 * * * * * 67 0 * * * * * * 3214 0 0 C 68 * 0 * * * * * * * * * * * * * * * * * * 68 0 * * * * * * 3214 0 0 V 69 * * * * 3980 * * 3591 * 4838 3755 4302 * 4037 4377 2575 2311 2214 * * 69 0 * * * * * * 3214 0 0 G 70 * * * * * 0 * * * * * * * * * * * * * * 70 86 * 4117 * * * * 3214 0 0 T 71 3287 * * * * * * * * * 4049 * 3856 * * 2933 989 3887 * 3927 71 0 * * * * 0 * 3135 0 1000 V 72 * * * * 2947 * * 2622 * * * * * * * * * 629 * 4027 72 0 * * * * * * 3144 0 0 T 73 * * 3458 * 1977 * * 4932 * 4078 * * * * 3907 1873 2163 * * * 73 98 3927 * 2000 415 * * 3144 1000 0 L 74 * * * * 4027 * * 2574 * 958 2947 * 4078 * * * * 3901 * * 74 65 4506 * 2000 415 * * 3144 1000 0 D 75 2718 * 1536 2408 * 3799 * * * 3605 * 3472 * * * * 3826 * * * 75 277 2516 * 1880 457 * * 3018 1464 0 P 76 3649 * * 3799 * * * 3714 * * * * 1393 1749 * 3409 * * * * 76 1162 854 * 1905 448 * * 3018 2342 0 L 77 3072 * * * 2171 * * 3563 * 4527 * * * * * 2254 * 1638 * * 77 0 * * * * * * 2910 0 0 D 78 * * 790 3072 * * * 3563 * * * * * * * 4084 3679 3621 * * 78 236 2730 * 1610 572 * * 2910 1489 0 I 79 * * * * * * * 1280 * 980 * * * * * * * 3621 * * 79 0 * * * * * * 2910 0 0 T 80 * * * * * 4645 * * * * * 3567 * * 3072 1213 1620 * * * 80 0 * * * * * * 2910 0 0 C 81 * 0 * * * * * * * * * * * * * * * * * * 81 0 * * * * * * 2910 0 0 N 82 4625 * 1099 * * * * * 3540 * * 2359 * * 2239 * * * * * 82 0 * * * * * * 2879 0 0 E 83 * * * 2069 * 2673 * * 4343 * * * 1366 * 2975 * * 4625 * * 83 0 * * * * * * 2879 0 0 V 84 * * * * * * * * * 2213 * * 1403 * * * * 1300 * * 84 0 * * * * * * 2656 0 0 Q 85 * * * * * * * * * * * * * 537 1686 * * * * * 85 0 * * 0 * * * 1681 0 0 //