HHsearch 1.5 NAME d1jnpa_ FAM FILE d1jnpa_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1jnpa_.a3m DATE Mon Mar 8 19:08:11 2010 LENG 101 match states, 101 columns in multiple alignment FILT 13 out of 17 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.9 EVD 0.4627 1.5853 SEQ >ss_dssp CCBCSSCCSBEEECSSSCEEETTCCEEEEEEEECSSSCEEEEEECCCCCCCCCCSTTTCSCSSCSCEEECTTSCEEETTSCEEEEEECBBSSSCBEEEEE C >sa_dssp EEECEECBDDADBDCDEBABBCEECAACCEDDEDEEDCCACADCDECEEDEECDDEDBEECDBACCACCDEDDDACADEEDCADCDDBCCDEECCBABAC C >ss_pred CCCCCCCCCEEEEECCCEEECCCCCEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCEEEEEEEEECCCHHHHHHC C >ss_conf 9757898967999406626536775589999982464699999620257676780004776686089981287561488746886542101328887750 9 >Consensus xxxxxxxPxxLwxxrxxvYxDExxRxWvxvxvexxxxxxvxlxqxxvxlxexxxpsxlxxsxLPxmWqLypxxrYRgsDSxxWeIxxHxqxxxxexLlLx l >d1jnpa_ RAETPAHPNRLWIWEKHVYLDEFRRSWLPVVIKSNEKFQVILRQEDVTLGEAMSPSQLVPYELPLMWQLYPKDRYRSADSMYWQILYHIKFRDVEDMLLE L >UniRef50_O95988(13-120:128) T-cell leukemia/lymphoma protein 1B n=7 Tax=Eutheria RepID=TCL1B_HUMAN E=3e-09 s/c=0.58 id=40% cov=92% -------PGRLWIQRPGIYEDEEGRTWVTVVVRFNpsrrewarasqgsryePSITVHLWQMAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWE IADHGQIDSMEQLVL-- >UniRef50_UPI00004F6284(11-119:126) UPI00004F6284 related cluster n=1 Tax=Bos taurus RepID=UPI00004F6284 E=3e-25 s/c=1.06 id=35% cov=93% -------PCCLWFQRPGVYEDEKGRIWVAVAMQIIPSYRARgsgapesTHDDSITvhlwqLPNQMprSPSSLLVSGLPIKWELYPGRRYRGTDSRLWEIV DHDQVISMENLILK- >UniRef50_P56842(11-116:122) Protein TCL1B3 n=19 Tax=Mus musculus RepID=TCLB3_MOUSE E=7e-26 s/c=1.11 id=24% cov=97% ----PFPPRFLVCTRDDIYEDENGRQWVVAKVETSRSpygsrietcITVHLQHMTTIPQEPTPQQPINNNSLPTMWRLESMNTYTGTDGTYWRLLDHSQM GDTLQLILDI >UniRef50_P56278(8-103:107) Protein p13 MTCP-1 n=13 Tax=Mammalia RepID=MTCPB_HUMAN E=8e-27 s/c=1.26 id=41% cov=96% -----APPDHLWVHQEGIYRDEYQRTWVAVVEEETSFLRARVQQIQVPLGDAARPSHLLTSQLPLMWQLYPEERYMDNNSRLWQIQHHLMVRGVQELLLK L >UniRef50_P56279(14-110:114) T-cell leukemia/lymphoma protein 1A n=7 Tax=Eutheria RepID=TCL1A_HUMAN E=8e-24 s/c=1.14 id=58% cov=95% ------HPDRLWAWEKFVYLDEKQHAWLPLTIEIKdrLQLRVLLRREDVVLGRPMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDML LEL >UniRef50_UPI0000ECC5AE(2-70:74) UPI0000ECC5AE related cluster n=1 Tax=Gallus gallus RepID=UPI0000ECC5AE E=3e-15 s/c=1.21 id=39% cov=69% --------------------------------QEEGMLRARIQRVQVPLGEALRPSQLPPSRLPHMWQLSQGEQYRDSNSRVWEIEHHLMLGGVEELLLK L >UniRef50_UPI0001553541(30-97:100) PREDICTED: similar to T-cell leukemia protein Tcl1b3a n=2 Tax=Mus musculus RepID=UPI0001553541 E=8e-12 s/c=1.05 id=40% cov=40% --------------------------------------------------------------LPWMWTLQSMNIYRGADSKQWRLLTHVQVGDILQLILM L >UniRef50_UPI0000E8029D(6-79:84) PREDICTED: hypothetical protein n=1 Tax=Gallus gallus RepID=UPI0000E8029D E=1e-06 s/c=0.73 id=38% cov=32% --HAGAPPVRLWVRRVGVYCDEHRKTWLVAAEE------------------------------------------------------------------- - >UniRef50_UPI00017F0536(28-161:167) PREDICTED: similar to T-cell lymphoma breakpoint 1 n=1 Tax=Sus scrofa RepID=UPI00017F0536 E=2e-40 s/c=1.53 id=59% cov=101% RVHTALHPDHLWIWAKAVYVDENQRTWLPIItefirlhlegtgglqegsdlifrctlwlqccdVTTESGRQVLMRQEDVPLMEALCPSQLTPYPLPLMWQ LYPGRRYRGSDSSFWRIVYHIKFSGMEDMLLEQ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * * * * * * * * * * * * 0 * * * * * 1 0 * * * * * * 1409 0 0 A 2 542 * * * * * * * * * * * * * * * * 1676 * * 2 0 * * * * * * 1409 0 0 E 3 * * * 1954 * * 431 * * * * * * * * * * * * * 3 0 * * * * * * 1858 0 0 T 4 1681 * * * * * * * * * * * * * * * 539 * * * 4 0 * * * * * * 1858 0 0 P 5 1707 * * * * 2341 * * * * * * 1011 * * * * * * * 5 0 * * * * * * 2275 0 0 A 6 1124 * * * 1862 * * * * 1909 * * * * * * * * * * 6 0 * * * * * * 2353 0 0 H 7 * * * * * * 1066 * * * * * 937 * * * * * * * 7 0 * * * * * * 2432 0 0 P 8 * * * * * * * * * * * * 0 * * * * * * * 8 0 * * * * * * 2838 0 0 N 9 * 1826 1438 * * 3309 * * * * * 3453 * * 3049 * * 4800 * * 9 0 * * * * * * 2838 0 0 R 10 * 2573 * * 2090 * 1891 * * * * * * * 1610 * * * * * 10 0 * * * * * * 2838 0 0 L 11 * * * * * * * * * 0 * * * * * * * * * * 11 0 * * * * * * 2838 0 0 W 12 * * * * * * * * * * * * * * * * * 2090 386 * 12 0 * * * * * * 2838 0 0 I 13 3329 2090 * * 2573 * * 1529 * * * * * * * * * 2726 * * 13 0 * * * * * * 2838 0 0 W 14 * * * * * * 3118 * * * * * * 1895 4800 * 2090 * 1535 * 14 0 * * * * * * 2838 0 0 E 15 3675 * * 1906 * * * * * * * * * 3118 890 * * * * * 15 0 * * * * * * 2838 0 0 K 16 * * 2090 3118 * * * * 1894 * * * 1895 * 3717 * * 4800 * * 16 0 * * * * * * 2838 0 0 H 17 3675 * 2090 * 3329 1252 3453 * * * * * * * * 3717 * * * * 17 0 * * * * * * 2838 0 0 V 18 * * * * * * * 1149 * * * * * * * * * 865 * * 18 0 * * * * * * 2838 0 0 Y 19 * * * * * * * * * * * * * * * * * * * 0 19 0 * * * * * * 2838 0 0 L 20 * 4800 * 989 * * * * * 2390 * * * * 3118 * * 2696 * * 20 0 * * * * * * 2838 0 0 D 21 * * 0 * * * * * * * * * * * * * * * * * 21 0 * * * * * * 2838 0 0 E 22 * * * 0 * * * * * * * * * * * * * * * * 22 0 * * * * * * 2838 0 0 F 23 * * * 3309 3453 * 2737 * 1902 * * 1862 * * * * * * * 3118 23 0 * * * * * * 2838 0 0 R 24 * * * * * 989 * * * * * * * 1438 2975 * * * * * 24 0 * * * * * * 2838 0 0 R 25 * * * * * * 3329 * 4800 * * * * * 210 * * * * * 25 0 * * * * * * 2838 0 0 S 26 3329 * * * * * * 2573 * * * * * 2090 * 3453 1299 * * * 26 0 * * * * * * 2838 0 0 W 27 * * * * * * * * * * * * * * * * * * 0 * 27 0 * * * * * * 2838 0 0 L 28 * * * * * * * * * 1392 * * * * * * * 692 * * 28 0 * * * * * * 2838 0 0 P 29 1332 * * * * * * * * * * * 1535 * * * 3309 2674 * * 29 0 * * * * * * 2838 0 0 V 30 1885 * * * * * * 2696 * 3329 * * * * * * * 1073 * * 30 0 * * * * * * 2838 0 0 V 31 2294 * * * * * * 3675 2090 * * * * * * * 2510 1702 * * 31 118 3675 * 5000 46 * * 2838 1000 0 I 32 * * * 2726 * * * 1906 * * 2573 * * * * * * 1272 * * 32 0 * * * * * * 2838 0 0 K 33 * * * 937 * * * * 3523 * * * * 2170 3391 * 3770 * * * 33 111 3755 * 5129 42 * * 2887 1000 0 S 34 * * * 2514 3325 * * 1953 * * * * * * * 3451 1413 * * * 34 0 * * * * * * 2860 0 0 N 35 * * * 2180 * * * 2627 3376 * * 2387 * * * 2158 3239 * * * 35 315 2350 * 3210 165 * * 2860 1571 0 E 36 * * * 3451 * 3853 * * * 3376 * * 1934 * 3073 1464 * * * * 36 0 * * * * * * 2860 0 0 K 37 * * * * 3239 3729 3248 * 3451 * 3853 * * 3376 * 1131 * * * * 37 366 2158 * 3245 161 * * 2860 1281 0 F 38 * * * * 3451 * * 2193 * 1525 * * * * 3729 * * 3248 * 2627 38 0 * * * * * * 2860 0 0 Q 39 * * * * * * * * * * * * * 2042 1206 * 1627 * * * 39 111 3758 * 4000 93 * * 2860 1000 0 V 40 1927 * * * * * * * * * * * * * * * * 440 * * 40 0 * * * * * * 2860 0 0 I 41 * * * * * * 1330 3451 * 2013 * * * * 1927 * * * * * 41 133 3507 * 2807 222 * * 2860 1000 0 L 42 * * * * * * * 3853 * 772 2724 * * * * * 3507 3239 * * 42 0 * * * * * * 2860 0 0 R 43 * * * * * * 3507 * * * * * * 1766 1560 * * * 1842 * 43 0 * * * * * * 2860 0 0 Q 44 * * 3507 * * * 3073 * * * * * * 672 2595 * * * * * 44 111 * 3758 * * * * 2860 0 0 E 45 * * 3103 1492 * * * 3164 * * 1538 * * * * * * 3794 * * 45 0 * * * * * 0 2866 0 1000 D 46 3218 * 1492 * * * * * * * * * * 2445 * 3103 2078 * * * 46 0 * * * * 0 * 2866 0 1000 V 47 * * * * * * * 3507 * 3758 * * * * * * 2158 704 * * 47 0 * * * * * * 2860 0 0 T 48 * * * * * * 3325 3073 * 3248 * * 1624 * * 3718 2479 3376 * * 48 133 3507 * 2322 322 * * 2860 1000 0 L 49 * * * * 3248 * * * * 732 * 3758 3073 * * * 3325 * * * 49 0 * * * * * * 2860 0 0 G 50 * * * * * 1188 * * * * 3729 * 3507 1746 3325 * * * * * 50 0 * * * * * * 2860 0 0 E 51 * * 3239 653 * * * * * * 3758 3507 * * 3376 * * * * * 51 0 * * * * * * 2860 0 0 A 52 1259 * * * * * * * * 3325 * * 1342 3507 * * * * * * 52 0 * * * * * * 2860 0 0 M 53 3239 * * * * * * * * 2033 1859 * * * 3758 3248 3073 3718 * * 53 133 3507 * 1000 1000 * * 2860 1000 0 S 54 * 2724 * * * * * * * * * * 2158 * 2514 1502 3376 * * * 54 0 * * * * * * 2860 0 0 P 55 * * 3248 * * * * * * * * * 565 3073 * 3325 * * * * 55 0 * * * * * * 2860 0 0 S 56 * * * * * 3325 * * * * * * * 3073 * 546 3376 * * * 56 0 * * * * * * 2860 0 0 Q 57 * * * * * * 3239 * * 2464 * * 3073 1211 * 2627 * * * * 57 0 * * * * * * 2860 0 0 L 58 * * * * * * * 2216 3248 786 3325 * * * * * * * * * 58 0 * * * * * * 2860 0 0 V 59 3718 * * * * 3376 * * * 1901 * 3073 2565 * * * 2469 3451 * * 59 0 * * * * * * 2860 0 0 P 60 * * * * 2286 * * * * * * 3073 1292 * * * 3239 2627 * * 60 0 * * * * * * 2860 0 0 Y 61 * 3718 * * * * * * * * * 2158 * * * 908 * * * 2584 61 0 * * * * * * 2860 0 0 E 62 * * * 3451 3248 2627 * * * 3376 * * 2724 2282 3853 3073 * * * * 62 0 * * * * * * 2860 0 0 L 63 * * * * * * * * * 0 * * * * * * * * * * 63 0 * * * * * * 3121 0 0 P 64 * * * * * * * * * * * * 0 * * * * * * * 64 0 * * * * * * 3121 0 0 L 65 3334 * * * * * 3421 2086 * 2058 * * * * 3300 3927 3152 * 4264 * 65 0 * * * * * * 3121 0 0 M 66 * * * * * * * * 2694 * 633 * * * * * 3300 3334 * * 66 0 * * * * * * 3121 0 0 W 67 * * * * * * * * * * * * * * * * * * 0 * 67 0 * * * * * * 3121 0 0 Q 68 * * * 2694 * * * * * * * * * 787 2224 * 4264 * * * 68 0 * * * * * * 3121 0 0 L 69 * * * * * * * * * 0 * * * * * * * * * * 69 0 * * * * * * 3121 0 0 Y 70 * * * 2224 * * * * * * * * * 4264 * 3421 * * * 643 70 0 * * * * * * 3121 0 0 P 71 * * * * * * * * * * * * 643 3421 * 1910 * * * * 71 0 * * * * * * 3121 0 0 K 72 * * 3626 3364 * 1071 * * 3647 * 2603 * * * 3300 * * * * * 72 0 * * * * * * 3121 0 0 D 73 * * 3647 2392 * 3626 * * * * * 1910 * * 1386 * * * * * 73 0 * * * * * * 3121 0 0 R 74 * * * * * * * 4264 3334 * * * * 3421 885 * 2224 * * * 74 0 * * * * * * 3121 0 0 Y 75 * * * * * * * * * * * * * * * * * * * 0 75 0 * * * * * * 3121 0 0 R 76 * * * * * * * * * * 3364 * * * 339 * 3152 * * * 76 0 * * * * * * 3121 0 0 S 77 3334 * 2392 * * 864 * * * * * * * * * 2636 * * * * 77 0 * * * * * * 3121 0 0 A 78 1588 * * * * * * * * * * 3364 * * * 1722 1905 * * * 78 0 * * * * * * 3121 0 0 D 79 * * 305 * * * * * * * * 2392 * * * * * * * * 79 0 * * * * * * 3121 0 0 S 80 3300 * * * * 3152 * * * * * * * * * 348 * * * * 80 0 * * * * * * 3121 0 0 M 81 * * * * * * * * 4264 * 2463 * * * 1535 1694 3152 * * * 81 0 * * * * * * 3121 0 0 Y 82 * * * * 1694 * * * * 1991 * * 3300 4264 * * * 3421 * 2378 82 0 * * * * * * 3121 0 0 W 83 * * * * * * * * * 3300 * * * * * * * * 155 * 83 0 * * * * * * 3121 0 0 Q 84 * * * 1157 * * * * * * * * * 2498 1417 * * * * * 84 0 * * * * * * 3121 0 0 I 85 * * * * * * * 407 * 2026 * * * * * * * * * * 85 0 * * * * * * 3121 0 0 L 86 3142 * * 3358 * * * * * 1769 * * * 3274 * * * 1350 * * 86 0 * * * * * * 2950 0 0 Y 87 * * 1246 * * * 2315 * * * * * * * * * 3960 * * 1674 87 0 * * * * * * 2950 0 0 H 88 * * * * * * 0 * * * * * * * * * * * * * 88 0 * * * * * * 2950 0 0 I 89 * * 2577 * * 3142 * 1674 * 2315 * * * * * 2829 * 3960 * * 89 0 * * * * * * 2950 0 0 K 90 * * * 3982 * * * * 2000 * 2315 * * 1042 * * * * * * 90 0 * * * * * * 2950 0 0 F 91 * * * * 2440 * * 2241 * 3290 2748 * * * * * * 1501 * * 91 0 * * * * * * 2949 0 0 R 92 * * 2241 * * 1642 * 2511 * * * * * * 2292 3497 * * * * 92 0 * * * * * * 2949 0 0 D 93 * * 1673 * * 1341 * * * * * * * * * 1778 * * * * 93 0 * * * * * * 2949 0 0 V 94 * * * * * * * 3853 * * 1395 * * * * * 2748 1316 * * 94 0 * * * * * * 2949 0 0 E 95 * * * 570 * * * * * 2197 * * * 3203 * * * * * * 95 0 * * * * * * 2949 0 0 D 96 * * 1839 2246 * * * * * * * 2511 * 1581 * * * * * * 96 0 * * * * * * 2949 0 0 M 97 * * * * * * * * * 473 1839 * * * * * * * * * 97 0 * * * * * * 2949 0 0 L 98 * * * * * * * 1346 * 1028 * * * * * * * 3105 * * 98 0 * * * * * * 2949 0 0 L 99 * * * * * * * * * 0 * * * * * * * * * * 99 0 * * * * * * 2949 0 0 E 100 * * 2735 1787 * * * * 1236 * 2885 * * * * * * * * * 100 0 * * * * * * 2411 0 0 L 101 * * * * * * * 2423 * 534 * * * 3027 * * * * * * 101 0 * * 0 * * * 2340 0 0 //