HHsearch 1.5 NAME d1j0pa_ FAM FILE d1j0pa_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1j0pa_.a3m DATE Tue Mar 9 04:48:46 2010 LENG 108 match states, 108 columns in multiple alignment FILT 111 out of 137 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.4 EVD 0.5321 2.0813 SEQ >ss_dssp CCCCCCCSCEEECSSSSCEEECGGGCTTSCGGGTSCEETTEECCSCTTSTTSSCBCCTTCCSTTBHHHHHHCSSCSSCCHHHHHHHHHTTCHHHHHHHHC SSSSSSCC >sa_dssp EEEEEDEDEDECEEDEEDCDCCCDECEEDEEADDCCDDEEEECEDEDCCEECCDCDDEECEDEDABDCCBCCEECECEBDCBCCDEEBDEDEEDDDCCCC EEDBECCE >ss_pred CCCCCCCCCCCCCCCCCCEECCHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC CCCCCCCC >ss_conf 9878888773033657855418577367654532785556543235420110043231112445112332145643346999779862113233544677 66354659 >Consensus xxpxxpxxxxxxxxxxxxVxFxHxxHxxvxCxxCHHxxxxkxxxxxxxCxxCHxxxxxxxxxxxxxxxaxHxxxaxxxsCxxCHxxxxkxxxxxxxxxxg xxcxxCHx >d1j0pa_ AAPKAPADGLKMDKTKQPVVFNHSTHKAVKCGDCHHPVNGKEDLQKCATAGCHDNMDKKDKSAKGYYHAMHDKGTKFKSCVGCHLETAGADAAKKKELTG CKGSKCHS >UniRef50_Q6ALR1(55-155:567) Similar to deca-heme c-type cytochrome n=1 Tax=Desulfotalea psychrophila RepID=Q6ALR1_DESPS E=0.0001 s/c=0.47 id=22% cov=70% -----------------PTTLMESVHAKFACVDCHYKGHEDYPHQKFdsriSCGECHKEALAQYQN-SSHYLALRAGNVEAPDCTSCHSQHQVLDPQ--- ------------ >UniRef50_B3E4S2(313-393:782) Putative uncharacterized protein n=1 Tax=Geobacter lovleyi SZ RepID=B3E4S2_GEOLS E=0.0008 s/c=0.55 id=23% cov=60% ---------------------------QINCLKCHVKSDAapqgdnwKAKPSRAACGSCHDNINFATGANSKAGGAVHIIQTSDANCSTCHTTANITE-- --------------- >UniRef50_P00136(17-116:118) Cytochrome c3, 13 kDa n=3 Tax=Desulfomicrobium RepID=CYC31_DESNO E=4e-10 s/c=0.66 id=28% cov=93% ---KAKPKGDKPGALQKTVPFPHTKHATVECVQCHHTLEaDGGAVKKCTTSGCHDSLEFRDKANAKDIKLV--ENAFHTQCIDCHKALKKDKKPTGPT-- --ACGKCHT >UniRef50_B8FSF3(45-146:211) Putative uncharacterized protein n=2 Tax=Desulfitobacterium hafniense RepID=B8FSF3_DESHD E=6e-07 s/c=0.54 id=27% cov=82% -------------------EFKSSVHSSLSCTSCHsdvttypHPESAKVDKKKsvAMCTTCHTGRVEDSYQHSFHGKAVFLGSQRSASCVDCHSAhevls HNNPNSQVAKENVPQTCAKCH- >UniRef50_B5JHX4(238-344:644) Tetratricopeptide repeat domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHX4_9BACT E=2e-06 s/c=0.50 id=29% cov=58% -------------------------HAGVSCMDCHdpHSNELKlPADSNATCIQCHSTGKLDATIIDLSTHSRHPLGSTGDSCVNCHMPE---------- ----------- >UniRef50_A1ZL70(314-421:422) Cytochrome c3 n=2 Tax=Sphingobacteriales RepID=A1ZL70_9SPHI E=8e-21 s/c=0.94 id=22% cov=92% -----PIEWVRVHNLQDFAYFNHSQHtvvGGIECETCHGEIKEMEVVQQQSpltmgwCIDCHRKTVVEGAKDKGDGKA---KNAYYDRLLEIHQKDSKK- PITVENIGGLECGKCH- >UniRef50_A9A054(44-155:160) Cytochrome c, class III n=2 Tax=Desulfobacteraceae RepID=A9A054_DESOH E=3e-05 s/c=0.44 id=25% cov=89% ------------KHTKGIIMFTHKKHneeYKLDCGECHHDDKGaplklKLGDDVQPCLECHTKTGMPDRKALAGLSPADKKKAEleyhygaiHENCQGCH ETYNKEKvGDARKGPAPVSCTQCH- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 2583 0 0 A 2 834 * 2901 * * * * * * 2618 * * * * * * * 2814 * * 2 0 * * * * * * 3133 0 0 P 3 * * * 4159 * * * * * * * * 83 * * * * * * * 3 0 * * * * * * 3740 0 0 K 4 3944 * 3696 2764 4113 3193 * * 1775 * * * 3012 3895 * * * 4056 * * 4 94 * 3989 * * * * 4563 0 0 A 5 1572 * * * * * * * 2710 * * * 3859 * 3198 4141 * 1856 * * 5 0 * * * * 0 * 4335 0 1000 P 6 * * * * * 4440 * * 4018 * * * 165 * * * * * * * 6 0 * * * * * * 4353 0 0 A 7 2204 * 2132 4048 * * * 2296 * 5749 * * 4761 4678 * 3663 * 3091 * * 7 0 * * * * * * 4976 0 0 D 8 4056 * 1968 1831 * * * * 1885 * * 4554 4060 5058 * * * * * * 8 0 * * * * * * 5059 0 0 G 9 4684 * 5006 * * 2686 * * * 4598 * 4004 1980 * * * * 3345 1853 4570 9 0 * * * * * * 5109 0 0 L 10 3878 * 4944 4515 * * * 4577 2927 2432 * 5342 5036 * 4579 * 4374 1507 * * 10 0 * * * * * * 4930 0 0 K 11 5532 * 5511 3445 3843 * * 5095 2363 * * * 3177 * 1778 3878 5022 4952 4718 * 11 0 * * * * * * 5009 0 0 M 12 3930 * 4244 * 5451 5040 * 2552 5473 3531 2936 * 3978 * * 4649 5180 1800 * * 12 39 5214 * 1000 1000 * * 5216 1000 0 D 13 4968 * 3413 3301 * 4635 1699 * 2057 * * 3541 * 4462 * * 4243 * * * 13 0 * * * * * * 5247 0 0 K 14 3298 * 6496 5313 5398 2983 2741 * 3157 5578 5631 2164 4437 * 5298 3993 4983 5643 * * 14 27 5742 * 0 * * * 5262 1000 0 T 15 3503 * * * * 5952 * 4491 3688 2125 4469 * * 5780 4378 3723 1717 * 4241 * 15 0 * * * * * * 5923 0 0 K 16 5534 * * 5384 4512 * * * 1976 * 2800 5640 2336 3886 3601 5428 * 4241 * 3866 16 0 * * * * * * 5923 0 0 Q 17 3505 * 2484 4903 * 2710 7006 * 2490 * 5445 * 2115 4884 * 4413 5241 * * * 17 61 4595 * 2585 263 * * 5975 1544 0 P 18 3729 * 5924 * 3045 4917 5469 5511 3664 4549 * * 1235 * 4904 4735 4220 * 5675 5737 18 24 5924 * 2000 415 * * 6132 1000 0 V 19 3588 * * 4763 * * * 5952 * 5431 * * * * * 5553 5046 342 * * 19 0 * * * * * * 6448 0 0 V 20 4164 6093 4059 3475 4597 * 5670 6190 3253 3584 3791 6003 3472 5943 4403 6215 4446 3688 * 2854 20 0 * * * * * * 6559 0 0 F 21 * * * * 189 * * * * 3890 5726 * * * * * * * * 4785 21 0 * * * * * * 5834 0 0 N 22 5346 * 3133 4137 * 6424 * * 4453 * 4273 1912 2660 * * 2465 3766 5883 * * 22 0 * * * * * * 5834 0 0 H 23 4589 * * 5265 * * 271 * 3708 * * * * * * 5202 * * * * 23 0 * * * * * * 5834 0 0 S 24 2894 * 2777 5341 5987 3374 * * 3058 4896 7203 6297 * 5461 * 1663 3818 * * * 24 0 * * * * * * 5834 0 0 T 25 2355 * 5150 5123 5228 6528 * 4873 3057 3472 * * 4684 2887 5290 3774 4179 3032 * 5989 25 0 * * * * * * 5854 0 0 H 26 * * * * * * 0 * * * * * * * * * * * * * 26 326 2304 * 1302 750 * * 5763 3185 0 K 27 2019 * * 2962 5437 3006 * 6157 3648 * 3908 4162 * 5633 4981 3688 4630 5007 * 4052 27 109 3778 * 2544 271 * * 7215 3210 0 A 28 3372 * 2898 3856 * 1954 * 5370 2960 * 6006 4398 * 4248 5403 3088 5590 6403 * * 28 101 3887 * 661 1443 * * 7247 2029 0 V 29 6684 * * 6386 4358 5374 5459 2829 4142 2709 4159 5138 * 6371 * * * 1413 * 4047 29 136 3471 * 1376 702 * * 7250 3250 0 K 30 3205 * 2121 2757 * 3266 * * 5665 * * 3085 6654 5266 4645 3179 4649 4445 * * 30 120 3642 * 2348 316 * * 7250 3077 0 C 31 * 0 * * * * * * * * * * * * * * * * * * 31 0 * * * * * * 7279 0 0 G 32 3951 * 5119 4233 4694 3504 * 6460 4648 3845 4268 6434 * 3234 4514 3530 2872 2565 * * 32 0 * * * * * * 7279 0 0 D 33 3288 * 1918 3739 * 5525 6807 * 3885 6555 * 4425 * 4593 * 3523 2420 3694 * 6621 33 0 * * * * * * 7279 0 0 C 34 * 0 * * * * * * * * * * * * * * * * * * 34 0 * * * * * * 7279 0 0 H 35 * * * * * * 0 * * * * * * * * * * * * * 35 129 3546 * 2246 341 * * 7279 3028 0 H 36 5619 * 4959 4358 * 2707 722 * * * * 4825 * 4941 * 5878 5330 6130 * 6039 36 166 5030 3682 2124 376 * * 7573 2185 0 P 37 4330 * 3863 4269 * 5523 6645 * 2775 5902 3618 4814 1943 5367 5328 4558 3864 3701 * 5573 37 56 * 4727 * * * 0 7222 0 2801 V 38 4834 * 4554 4319 6359 4046 2475 3034 6522 4429 6415 5530 * 6040 6239 5207 6327 2764 3629 3173 38 35 6445 6324 0 * 1074 930 7208 1000 3428 N 39 4899 * 1884 2387 * 5147 6000 * 3605 * * 4624 4753 5098 6723 2626 3746 * * 5297 39 94 4245 6631 1111 897 2444 293 7493 2707 2492 G 40 4168 * 2726 2751 * 1637 5447 * 5830 4059 6762 4650 * 4556 * 4984 4158 4948 * 6480 40 114 3724 * 2373 309 * 0 7715 3233 2289 K 41 5170 6536 3378 6326 6368 3205 * 6767 1468 * 3061 6369 3717 5116 5689 6527 4589 6338 * 4626 41 26 6474 7282 0 * 1070 933 7714 1000 2289 E 42 2960 * 4445 2387 * 2976 7539 5380 4381 2945 * 5030 3912 5395 * 3755 5870 4121 * 5026 42 39 5227 * 1809 485 1257 782 7733 1985 2078 D 43 3440 * 3749 2906 * 3535 5394 6836 2653 4911 * 3446 4567 6649 3683 4063 4346 4099 * * 43 28 * 5699 * * 1495 632 7747 0 1734 L 44 3178 * 3921 5564 3960 4850 4729 2588 4908 3912 5157 5362 3500 * * 4643 4550 2717 * 5377 44 67 5653 5311 2658 249 836 1186 7757 1541 2294 Q 45 4307 * 4340 2366 6451 6068 6322 6425 3341 5349 5252 5769 4506 2446 4447 3603 3438 5846 * 5477 45 42 6983 5566 2322 322 * 0 7712 1000 2268 K 46 4879 * 3955 6739 5496 2347 * 6563 2582 5546 4470 4615 5170 3481 6018 3146 3934 4172 * 5510 46 129 5354 4033 1260 780 2643 252 7695 1495 2834 C 47 2985 1862 5361 * 4565 6856 6645 * 4677 5030 5698 2776 4799 4379 5868 6694 * 3161 * 4162 47 93 4533 5678 2235 345 636 1488 7532 2210 3481 A 48 2045 * * 4307 * 3130 * * 3333 * 3945 5095 3922 4286 6273 2426 4361 5711 6012 * 48 504 1846 5902 1790 492 1102 904 6996 4434 2434 T 49 4106 438 4722 6001 * * * * * * * * * * * 4290 3336 * * * 49 59 6509 5104 1585 585 1181 839 7734 1000 2591 A 50 2535 * * 2853 * 4894 * 3502 4579 3692 5207 * 6638 7383 4616 2694 3095 3434 * * 50 25 * 5887 * * 2344 316 7731 0 2740 G 51 5040 * 2788 3011 * 2284 * * 4865 4666 * 3672 * 2685 6823 3347 3631 * * * 51 0 * * * * 522 1719 7727 0 2738 C 52 * 55 * * * * * * * * * * * * * * * * * 4732 52 0 * * * * * 0 7764 0 1428 H 53 * * * 4732 * * 55 * * * * * * * * * * * * * 53 171 5427 3495 1349 719 654 1457 7764 1578 1428 D 54 3583 * 1616 5652 * 5029 * 6458 4154 5782 * 4249 7300 3794 3402 3807 2780 6459 * * 54 71 4729 6638 3211 165 * 0 7733 2086 3553 N 55 4205 * 2689 2967 * 4738 5919 * 3947 4992 5505 3106 3530 4083 4510 5323 3250 4186 * * 55 76 5647 4981 2807 222 2158 366 7721 1259 3493 M 56 2447 * * 6705 * 5041 * 5184 3735 3680 5505 6310 2267 5423 4427 6436 2111 5811 * 5449 56 131 6460 3730 1585 585 * 0 7011 1000 3337 D 57 4039 * 3450 3267 5010 1776 * * 4288 5649 * 4421 6233 6034 5227 4159 3534 3244 * * 57 96 6606 4202 1585 585 1456 654 7010 1000 4253 K 58 2622 * 3318 3987 5191 6475 5964 3291 2558 4245 6403 5381 6173 6614 * 3955 4029 3420 * 5987 58 56 4717 * 898 1109 1216 812 6734 1948 3863 K 59 3532 * 3051 3179 * 5608 6074 5291 2735 6321 6518 4309 3675 3080 3414 6108 4484 6091 * 4908 59 66 5008 6228 688 1398 2590 262 7013 1804 3051 D 60 2761 4860 3283 2707 5030 2998 * * 3578 6885 * 5139 5345 5542 3576 5050 4148 6090 * 4195 60 71 4903 6127 866 1148 899 1108 6986 1972 3295 K 61 3367 * 5219 4191 5828 2721 6141 * 2372 5185 5673 6855 * 3187 3402 3198 4238 7246 * 5960 61 84 5498 4855 0 * 886 1123 6998 1594 2689 S 62 4242 * 2270 3557 * 2927 6191 5626 2694 * * 3950 4718 4245 6101 4178 4241 5933 * 4626 62 109 * 3783 * * 2505 280 7045 0 3217 A 63 4364 4810 3731 3345 3348 5547 4923 3501 5322 5306 6079 3484 3292 * * 4575 6878 4752 5726 2855 63 0 * * * * 1031 970 6947 0 4046 K 64 3402 * 3091 3594 * 5263 3620 5285 2987 4312 5037 5771 5009 6399 4079 2858 4495 3997 * * 64 16 * 6544 * * * 0 7026 0 3184 G 65 4078 * 5464 5702 5387 2803 * 5372 4240 4918 * 3980 3649 6344 5720 2376 2790 5760 * 3448 65 32 * 5492 * * * 0 7012 0 3088 Y 66 4605 6448 4538 3905 3605 4631 4042 5321 4792 2868 5517 * 3541 6188 * 4398 3745 6472 * 2310 66 30 5621 * 1635 560 * 0 6992 1477 3563 Y 67 4113 6282 3325 3919 2809 3522 6586 5566 4895 3433 5147 5152 * 4660 5292 4021 4744 * * 2683 67 0 * * * * 1689 536 6982 0 3563 H 68 3844 * * 4916 5728 4815 2382 * 2014 5171 5564 3787 6246 4218 3637 4130 5852 6376 6435 4760 68 30 6605 6576 0 * 2655 249 7026 1000 2823 A 69 1027 * * 5729 * * 3142 4782 4773 5008 * 5603 5358 6360 * 3414 3790 4795 * 6179 69 153 5438 3688 2000 415 2847 216 7023 1477 2793 M 70 4688 6218 * 5222 1795 * 3496 3973 * 4176 2633 6885 * 5800 4324 6745 * 3531 4501 4388 70 37 6256 6375 0 * 1814 483 6951 1000 3533 H 71 6286 * 3814 * 4857 6311 578 * 3739 * * 5146 * * 5765 * * * * 3692 71 79 6807 4490 2807 222 2989 194 6975 1000 3248 D 72 3085 * 3742 5036 6273 4003 5390 5858 3463 3959 5344 3839 4355 4488 6472 3303 2817 * * 3986 72 87 5276 4947 2116 378 757 1293 6953 1543 3759 K 73 4016 * 4124 3331 * 3196 * 4793 2079 4638 5840 * 5260 4057 3146 4976 3709 5596 * 6174 73 97 5552 4513 660 1445 976 1025 6995 1508 3393 G 74 4794 * 3487 3588 * 2570 5349 6187 2854 6471 * 2277 6276 3596 4940 4245 5754 6782 * 5604 74 72 * 4356 * * 1713 525 6997 0 3316 T 75 1210 * 4866 5343 * 4852 * * * 3940 * 4092 6191 5231 * 2402 3307 5647 * * 75 65 * 4513 * * 2232 345 6957 0 3450 K 76 3451 * 3873 2915 3301 4838 * 5140 3118 5361 6176 * 6031 6001 5968 3324 3756 * * 2567 76 143 6376 3601 3000 193 992 1008 6893 1000 4050 F 77 3532 5722 3709 4278 5509 2724 1685 6147 6366 * 6202 * 3919 3725 5413 6051 6671 6272 * 4665 77 106 6410 4082 2000 415 516 1735 6945 1000 4051 K 78 1817 * 3642 4924 * 9103 4829 3900 4451 6182 5668 4636 3430 5258 2971 5117 3615 5449 * * 78 55 5235 6483 1990 418 529 1704 6937 1631 3425 S 79 6580 * 3811 * * 5461 * * 5184 5401 6783 3512 * 2075 4377 1237 5734 5698 * * 79 0 * * * * 1704 529 6934 0 2061 C 80 * 57 * * * * * * * 4694 * * * * * * * * * * 80 0 * * * * 1592 581 6949 0 1640 V 81 4144 * 6041 * * * 5881 2897 6633 2985 2962 6378 * 4175 3705 5378 3704 2002 * 5801 81 0 * * * * * 0 6988 0 1404 G 82 4058 * 2704 3711 * 1552 * * * 6270 * 3062 * * * 2965 3392 6268 * * 82 0 * * * * * 0 6988 0 1404 C 83 5881 103 * * * * * 5835 * 5791 * 5926 * * * * * * * * 83 0 * * * * 1000 1000 6988 0 1404 H 84 * * * * * * 0 * * * * * * * * * * * * * 84 51 6065 5678 1585 585 0 * 7003 1000 1000 L 85 3816 * 6453 3538 * * 5762 4709 2656 4338 2039 * * 4360 4658 3665 3551 3817 * * 85 19 * 6256 * * * 0 6839 0 1358 E 86 2785 * 4230 2571 * * * * 2079 5765 * 6060 2946 3092 4504 * 4043 6445 * * 86 64 5006 6342 2064 394 * 0 6568 1661 1719 T 87 4849 * 5574 2109 5870 * 3622 4306 6012 2624 2521 * * 5153 * 4215 4457 4308 * 4894 87 0 * * * * * 0 6544 0 1934 A 88 3209 * 5753 5870 4890 4555 * * 2216 4273 * 2982 * 3305 4173 4553 3157 3734 * * 88 0 * * * * * 0 6239 0 1934 G 89 2991 * * 4248 5504 3496 * 4123 1170 8039 * 5133 * 5374 4050 4543 6096 4841 * * 89 175 5721 3393 2322 322 1132 879 6165 1000 1934 A 90 2412 * 4689 1769 * 5210 * 5288 2220 4759 * 5761 3792 4871 * * 4295 * * * 90 85 * 4123 * * 2433 296 6061 0 2787 D 91 * * 2284 4159 * 2249 * * 1999 * * 2929 * 4579 3992 * 5533 5608 * * 91 145 5089 3914 0 * 1545 605 5967 1000 3010 A 92 2610 * * 2953 * 4327 * * 2496 * * 4370 2298 * 3959 2884 5138 * * * 92 68 5379 5509 3322 152 2938 202 5843 1000 3410 A 93 3442 * 3510 3604 * 5355 * 4197 3470 5119 5464 * 3768 2117 5272 * 2643 5187 * * 93 91 * 4037 * * * 0 5835 0 3381 K 94 2375 * 4092 * * 4145 * 3662 2682 4422 * * * 5473 * * 1651 3840 * * 94 70 * 4400 * * 1489 635 5669 0 3664 K 95 3949 * 5570 * 3741 2008 * 5416 1652 * * * 3672 * 4188 * 5118 3523 * * 95 114 * 3719 * * 3054 185 5739 0 3317 K 96 3557 * 5172 3554 * * * * 1889 5481 * * 1229 * 3587 * * * * * 96 194 * 2989 * * 3058 184 5598 0 3584 E 97 4850 * 2777 1954 * 3665 * * * * 4897 3041 * 5048 * 3246 2713 4669 * * 97 84 * 4144 * * 3479 136 5502 0 3970 L 98 4079 2640 3882 4936 4992 * * 2970 * 2341 4216 3375 3184 * * * * 3983 * * 98 0 * * * * 498 1776 5502 0 3948 T 99 1541 5126 * * * 2351 * 5356 4264 * 5385 * * * * * 2314 2942 * * 99 0 * * * * * 0 5845 0 2421 G 100 * * * 4387 * 916 * * * * * * 1244 * * * * * * * 100 43 * 5085 * * 1271 772 5845 0 2421 C 101 4273 1190 4447 4513 * * * 5340 5420 2760 * * * 4684 * * 3925 3060 * * 101 0 * * * * 975 1026 5754 0 2129 K 102 2063 * 5413 2915 * 6818 5418 5466 4397 * 4454 * * * 3696 2666 2172 * * * 102 116 * 3696 * * 1065 938 5551 0 1441 G 103 * 539 3505 * * 5207 * * 4465 * * 3315 * * * * 4297 * * * 103 122 * 3627 * * 1936 437 5485 0 2279 S 104 2397 * * 4994 * 2425 * * 4358 * * 2709 * 4927 * 1741 4086 * * * 104 0 * * * * 960 1041 5442 0 2740 K 105 2942 * 3373 4254 * 2700 * * 1597 * 4283 * 5099 3770 * 3598 * * * * 105 15 6623 * 0 * 0 * 5527 1000 1845 C 106 * 0 * * * * * * * * * * * * * * * * * * 106 0 * * * * * * 5529 0 0 H 107 * * * * * * 0 * * * * * * * * * * * * * 107 0 * * * * * * 5529 0 0 S 108 2081 * * * * * * * * * * 3638 * * * 3289 783 * * * 108 0 * * 0 * * * 3692 0 0 //