HHsearch 1.5 NAME d1ifwa_ FAM FILE d1ifwa_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1ifwa_.a3m DATE Tue Mar 9 06:46:31 2010 LENG 92 match states, 92 columns in multiple alignment FILT 75 out of 79 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.0 EVD 0.4534 1.4476 SEQ >ss_dssp CCSSCSSCCSSCCSCSCHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHTTSCHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHSCTTSCCCC >sa_dssp EEEEDEEEEEEEEEDEEEEECEDDCDCACDCABEEDEDEDAADDACDDAEECDDDEABDAAECEEEBDEDCEEACECBDEDCEEDEEEEEEE >ss_pred CCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 98787878761010496999999868888999982278203221223432598999999966999999999999999999852025565219 >Consensus xpxxxxxxxxdxxxxxxxxQkqxLGexLypxVxxxxxxpxlAxKITGMLLEmxxxellxLLesxexLxxkVxEAxxvLxxxxxxxxxxxxxx >d1ifwa_ GPLGSPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKEQEQQTEQA >UniRef50_Q6CG61(511-584:589) YALI0B00616p n=1 Tax=Yarrowia lipolytica RepID=Q6CG61_YARLI E=7e-08 s/c=0.79 id=27% cov=77% --------------------KEIVGETLYPIVQRHPAigkDADTTAHVTGIMLQHDNADILSWLEDEQLLNKRIQQASDAYREWLEEREGQDE-- >UniRef50_Q4TBX5(146-216:216) Chromosome undetermined SCAF7082, whole genome shotgun sequence n=2 Tax=Clupeocephala RepID=Q4TBX5_TETNG E=2e-06 s/c=0.76 id=22% cov=68% ------------------EDKEGLGDKIFSLVEE--LDPLYANDITGMLLEMDQAALRQLICDRKMLDAAVRKAQAALNNHK---------- >UniRef50_A0BHJ6(499-581:583) Chromosome undetermined scaffold_108, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BHJ6_PARTE E=0.0001 s/c=0.57 id=25% cov=71% ---------SDFSKLTTSDQRMILGNLLFNKVQKKVQDKGVANHIVGMLIEPSSftiSDIFDFFENDQDLNDYIED------------------- >UniRef50_C9STA8(470-548:555) Polyadenylate-binding protein n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9STA8_VERA1 E=1e-18 s/c=1.19 id=34% cov=87% -----------NNATDARQQKQIIGELIFPKIAAQ--QPELAGKITGMLLEMENSELITLIEDDNAMKLKVDEALGVYEEYVKNQGTEEDES >UniRef50_B4QWH5(1963-2065:2749) Hyd n=3 Tax=Eumetazoa RepID=B4QWH5_DROSI E=1e-17 s/c=0.88 id=34% cov=92% ---ATPESLNDHLSVHLQQ----IGERLYPKVselmrmkfiiltvrlgqQIHSINQTHAPKITGMLLEIPTPQLLSVISSDETLRQKVNEAIEIITfKQK SETSAQSSQ- >UniRef50_Q23D16(685-763:763) Putative uncharacterized protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23D16_TETTH E=5e-09 s/c=0.79 id=27% cov=68% -----------------EQKKQLLGKPLMEKVGQSLPEHQkpLAGKITNLLLDFeiyEPEEIISMLSNADELKENIGTALELIQ------------- >UniRef50_UPI000180CE60(1192-1277:1635) PREDICTED: similar to progestin induced protein n=1 Tax=Ciona intestinalis RepID=UPI000180CE60 E=2e-13 s/c=0.89 id=29% cov=95% APPYFKKSSSRANRAY-ERSKQAIGERLYPKV--MAIHPVWVPKITGMLLGLPAYELLLLLRSERNLYDRVHQAASLLDEVHYDPLQDD--- >UniRef50_Q5C2H5(1-65:299) SJCHGC03468 protein (Fragment) n=1 Tax=Schistosoma japonicum RepID=Q5C2H5_SCHJA E=9e-12 s/c=1.10 id=29% cov=72% --------------------------RLFTRVQSIVRNEHLTARITGMLLELPSSEHSVLLANEEALSNRVEEARALITMSDSNEQNRVER- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 1585 * * * * 585 * * * * * * * * * * * * * * 1 0 * * * * * * 1867 0 0 P 2 * * * * * * * * * * * * 218 * * 2834 * * * * 2 0 * * * * * * 2403 0 0 L 3 * * * 2834 * * * * * 925 * 2756 2434 * * * * * * * 3 0 * * * * * * 2403 0 0 G 4 1798 * * * * 2547 * * * * * * 3249 * * 3109 2574 * * 2716 4 0 * * * * * * 2547 0 0 S 5 * * * * 2975 3629 * 2812 * * * * * * * 2149 1940 3654 * 3571 5 0 * * * * * * 2663 0 0 P 6 * * * * * * * * 2975 * * * 1020 3695 * 1724 * * * * 6 0 * * * * * * 2663 0 0 R 7 * * * 3022 * 3571 3654 * 1892 * * * 3695 * 2754 2195 * * * * 7 0 * * * * * * 2663 0 0 N 8 * * 2389 * * 3703 * * * 3128 * 1625 3843 * * 2158 * * * * 8 0 * * * * * * 2847 0 0 A 9 1662 * * * * * * * * 3156 * 2772 * * 3838 2082 * 3068 * * 9 0 * * * * * * 2847 0 0 N 10 * * * * * * * * * * * 1001 * * 4143 1553 3279 * * * 10 0 * * * * * * 3061 0 0 D 11 * * 501 4230 * * * * * * * * 4148 * 3505 * * * * 3388 11 0 * * * * * * 3061 0 0 N 12 3661 * * * 2842 4369 2593 * * 2584 * 1320 * * * * * * * * 12 0 * * * * * * 3210 0 0 N 13 3550 * 3779 4452 * * * * * 2223 * 1715 * * * 1850 * * * * 13 70 * 4390 * * * * 3210 0 0 Q 14 3812 * 4498 * * * * * 2950 3909 3552 * 4585 1926 3805 3135 3145 * * * 14 0 * * * * * 0 3292 0 1000 F 15 1554 * * 4498 3092 * 4528 * * 1892 4521 * * * * * 3812 3827 * * 15 60 4629 * 2322 322 0 * 3292 1000 1000 Y 16 3837 * 4026 4728 4070 * 1994 * * * * * 4778 * * 2394 3083 * * 2510 16 98 * 3924 * * * * 3381 0 0 Q 17 4465 * * 2487 * * * * 3630 2746 * 4358 2770 2428 4421 5001 3518 * * * 17 0 * * * * 0 * 3671 0 1000 Q 18 5702 * 4472 1703 * * 3627 * 4408 5692 * * 4017 1888 5315 3274 5593 * * * 18 0 * * * * * * 4045 0 0 K 19 * * 2801 1571 * * * * 4009 * * 5990 5233 1523 5056 5442 * 6123 * * 19 91 * 4039 * * * * 4125 0 0 Q 20 * * 4193 4371 * * 3305 * 4688 * * * * 523 * 5215 * 4882 * * 20 0 * * * * * 0 4111 0 1606 R 21 * * * * * * 6185 * 775 4804 6183 5790 6605 6441 1828 * 5012 * * * 21 20 6185 * 2322 322 * 0 4252 1000 1606 Q 22 4923 * 4379 2623 * * * * 5828 * 4373 3247 * 1207 3692 * 4133 5818 * * 22 0 * * * * * 0 4325 0 1606 A 23 2956 * * 4447 4944 5396 * 2699 * 2502 2247 * * 4362 * 4286 4614 3862 * 5779 23 0 * * * * 0 * 4325 0 1606 L 24 * * * * 6594 * * 2255 * 490 * * * * * * * 3874 * * 24 0 * * * * * * 4426 0 0 G 25 * * * * * 30 * * * * * * * * * 5584 * * * * 25 0 * * * * * * 4426 0 0 E 26 4645 * 3260 769 * * 6571 * 4113 * 5454 3148 * 5157 * 5431 * 6182 * * 26 0 * * * * * * 4426 0 0 Q 27 5036 * * 6037 * * 4217 5751 3019 3336 6400 6115 4509 3105 1390 4371 4533 * * * 27 0 * * * * * * 4428 0 0 L 28 * * * * * * * 3157 * 210 * * * * * * * 5418 * * 28 0 * * * * * * 4428 0 0 Y 29 * * * * 1402 * 4609 * * 5262 5110 * * * * * * * * 928 29 0 * * * * * * 4428 0 0 K 30 5528 * 4329 3567 5870 5418 * * 4539 4571 * 5126 978 5111 * 3503 3939 * * * 30 0 * * * * * * 4428 0 0 K 31 * * * 5094 * * 6759 3748 1553 1511 5870 * * 5224 3383 * 5418 5611 * 6403 31 0 * * * * * * 4428 0 0 V 32 * * * * * * * 1510 * 4443 * * * * * * * 730 * * 32 205 6926 3009 4087 87 * * 4428 1000 0 S 33 3612 6567 3679 2761 4184 4963 * * 5604 * * 4553 * 1687 3729 4131 5357 * * 3958 33 38 * 5274 * * * 0 4417 0 2685 A 34 2386 * 4914 3340 * 5371 * 4912 3185 * * 4624 5586 2029 3037 4125 6270 6514 * * 34 506 5411 1878 3000 193 288 2468 4416 1000 2799 K 35 * * * 5981 4821 * 2314 4512 2909 2590 2791 * * 3058 * 4441 * 3968 * 5051 35 273 * 2534 * * 2233 345 4328 0 3225 T 36 4620 4765 * 5955 5730 * 2581 4593 * 4218 * 5583 3989 5293 5692 4072 4419 2316 * 2400 36 454 * 1890 * * 747 1307 4405 0 3109 S 37 4838 * 5004 4709 * * * 2528 3860 2102 * * 2782 4774 4167 3256 5283 4254 * * 37 51 4838 * 1585 585 1103 904 4356 1000 3285 N 38 5320 * 2287 2422 * 4676 4655 * * 5534 * 2339 * 2089 5009 5699 * * * * 38 30 * 5582 * * 0 * 4262 0 3037 E 39 4872 * * 3125 * * 3449 * 3466 * * 3926 902 5947 * 4833 5878 * * * 39 98 * 3931 * * * 0 4449 0 1161 E 40 3621 * 3502 1578 5827 3656 4887 5241 3905 5618 * 4895 * 3810 * 4686 3524 5600 * * 40 45 5032 * 1000 1000 949 1053 4377 1000 2415 A 41 3723 * 6495 6407 4980 * 3376 * 6309 1236 4085 3589 * 5200 6328 * 5226 4004 5648 4452 41 0 * * * * 0 * 4384 0 1913 A 42 297 5703 * * * * * * * * * * * * * 4006 3548 5703 * * 42 0 * * * * * * 4428 0 0 G 43 2664 * 3855 4752 * 1660 * * 5111 * * 3070 2596 5893 * 4321 * 5184 * 6400 43 0 * * * * * * 4428 0 0 K 44 * * 5747 * * * 4192 * 318 * * * * 4596 4214 * * 5094 * * 44 0 * * * * * * 4428 0 0 I 45 * * * * * * * 408 * 4685 * * * * * * * 2270 * * 45 0 * * * * * * 4428 0 0 T 46 * * * * * * * 5184 * * * * * * * * 128 4119 * * 46 0 * * * * * * 4428 0 0 G 47 * 5692 * * * 71 * * * * * 5110 * * * * * * * * 47 0 * * * * * * 4428 0 0 M 48 * * * * * * * 3624 * 5110 214 * 5184 * * * * * * * 48 0 * * * * * * 4428 0 0 I 49 * * * * 4312 * * 3715 * 384 3218 * * * * * * * * * 49 0 * * * * * * 4428 0 0 L 50 * * * * * * * 4119 * 86 * * * * * * * * * * 50 0 * * * * * * 4428 0 0 D 51 * * 2247 485 * 4352 * * * * * * * 5261 * * * * * * 51 24 5904 * 0 * * * 4428 1000 0 L 52 * * * * 3573 5611 4695 3256 * 1943 1520 * 4119 4633 * * * 4456 * * 52 42 5110 * 1585 585 * * 4428 1000 0 P 53 6320 * 1548 3261 * 3622 * * 5451 * * 4422 1947 * * 2929 * * * * 53 0 * * * * * * 4428 0 0 P 54 4103 * 6062 5611 * * * * 4631 * * 1706 2690 2808 5915 3898 3554 3429 * * 54 42 5126 * 1585 585 * * 4428 1000 0 Q 55 2499 * 2923 3356 5111 6969 6960 * 5451 * * 6179 4262 4291 * 2098 3125 * * 4046 55 0 * * * * * * 4428 0 0 E 56 4310 * 3416 812 * 5751 * * 5870 * * * * 2278 * * 5262 5759 * * 56 61 4593 * 1108 900 * * 4428 1546 0 V 57 5451 * * * 5586 5184 5036 2279 * 1009 * * * * * * * 2355 * * 57 61 4596 * 1585 585 * * 4428 1286 0 F 58 5611 * * * 3396 * * 2885 * 830 5424 4579 * * 5747 5036 * 4340 * 5451 58 0 * * * * * * 4428 0 0 P 59 5603 * 5126 3407 * * 2437 5457 5105 3972 3452 3163 5072 3733 5457 3020 4106 5036 * 6188 59 0 * * * * * * 4428 0 0 L 60 * * * * 5126 * * 5965 * 715 2278 * * * * * 5094 3848 5261 6062 60 0 * * * * * * 4428 0 0 L 61 * * * * 3357 * * 2866 * 515 5703 * * * * * 5904 5090 * * 61 0 * * * * * * 4428 0 0 E 62 3872 5152 3410 1371 * * * * 6420 5094 * 5451 * 3452 4205 2986 4071 5870 * 6556 62 0 * * * * * * 4428 0 0 S 63 * * 1779 5262 * * 5692 * * * * 2500 * * 5904 1164 5406 * * * 63 0 * * * * * * 4428 0 0 D 64 4089 * 2855 1958 * * 5373 * * 5184 * 4558 2203 3658 4391 3347 6769 * * * 64 0 * * * * * * 4428 0 0 E 65 3322 * 2618 1387 5915 5262 * 6179 3383 * * 4783 6852 3340 5703 6759 5040 * * * 65 0 * * * * * * 4428 0 0 L 66 2074 * 4565 3729 * 5401 * * * 2511 4287 5696 * 3350 4437 3185 3925 * * 4177 66 24 5948 * 0 * * * 4398 1000 0 F 67 * * * * 3157 * * 6167 * 216 6235 * * * * * * * * * 67 0 * * * * * * 4398 0 0 E 68 3890 5818 5023 3536 * 5425 * 5948 2296 4627 * 3154 * 3712 2308 3850 5198 7013 * 5696 68 0 * * * * * * 4398 0 0 Q 69 2372 * 3022 2283 * * * 5679 4853 6235 5896 4474 * 2717 * 3348 3904 4960 * * 69 0 * * * * * * 4398 0 0 H 70 3613 * * * * * 4219 * 1227 * 4036 4215 * 3649 2462 * * * * 4027 70 0 * * * * * * 4398 0 0 Y 71 4899 5705 * * 5117 * * 1552 * 6051 * * * * * * * 868 * 6096 71 0 * * * * * * 4398 0 0 K 72 3871 * 1941 2803 * 5032 4541 5599 4138 * * 3084 * 3039 3821 6070 5290 5252 * * 72 0 * * * * * * 4398 0 0 E 73 4645 * 5039 676 * * * * 3628 * * * * 2723 * 5861 4205 * * * 73 0 * * * * * * 4398 0 0 A 74 173 5595 * * * 4010 * * * * * * * * * 5050 * * * * 74 0 * * * * * * 4348 0 0 S 75 3569 * * * 4278 * * 3223 * 1785 3347 5836 * 4071 4915 4494 5880 2850 * 4094 75 0 * * * * * * 4321 0 0 A 76 2558 5210 3389 2191 * 3720 5355 * 4065 * 6703 5097 * 5121 4281 2730 4791 5457 * * 76 0 * * * * * * 4294 0 0 A 77 2892 * * * * * * 2916 * 2135 * * * * * 5019 5176 1163 * * 77 0 * * * * * * 4278 0 0 Y 78 * * * * * * * 2389 * 515 * * * * * * * * * 3196 78 32 * 5507 * * * * 4278 0 0 E 79 6421 5717 4544 2845 * 5502 * 6627 2238 5694 5037 4519 * 2340 2846 * 4196 4094 * * 79 57 4692 * 0 * 0 * 4088 1181 1148 S 80 2550 * * 2116 * 5030 * * 3405 * 5017 3511 * 4649 4561 2126 4521 * * * 80 0 * * * * * * 3863 0 0 F 81 3400 * * * 3306 * 1376 * * * * * * 4017 5948 2980 5837 3657 3874 4345 81 41 5156 * 487 1803 * * 3878 1279 0 K 82 4245 * 4781 5392 * 4468 4511 4966 1488 4174 5064 5705 * 1923 * 5801 * 5411 * * 82 0 * * * * * * 3819 0 0 K 83 2936 * 5508 3626 * * * * 2413 * * 4767 4384 2979 3122 2850 * 3732 * 4706 83 0 * * * * * * 3759 0 0 E 84 * * 4647 1359 * 5763 * 5289 3049 * * 3062 * 1958 * * * * 5153 * 84 0 * * * * * * 3784 0 0 Q 85 3902 * * 2490 * 5275 * * 3379 * * * 3823 1980 3351 3189 3595 5751 * * 85 0 * * * * * * 3756 0 0 E 86 2390 5169 * 1239 * 4041 * * * 4345 * * 4967 4288 * 3056 4490 * * * 86 0 * * * * * * 3652 0 0 Q 87 2689 * 3101 4426 * 3300 * * 4387 * * 3809 * 1919 * 4260 2791 * * * 87 0 * * * * * * 3456 0 0 Q 88 3315 * 3637 2183 * * * * 4501 * * 3977 * 1278 3663 * * * * * 88 0 * * * * * * 3397 0 0 T 89 * * 1696 2816 * 4472 * * * * * 3940 * * * 1973 3409 3470 * * 89 0 * * * * * * 3339 0 0 E 90 * * 3616 1078 * * * * * * * * * * 3825 1418 * * * * 90 0 * * * * * * 3133 0 0 Q 91 3770 * * 3301 * 3500 * * 3749 * * * * 1653 2176 * * 3021 * * 91 0 * * * * * * 2807 0 0 A 92 253 * * * * * * * * * * * * * * 2637 * * * * 92 0 * * 0 * * * 2221 0 0 //