HHsearch 1.5 NAME d1h6kx_ FAM FILE d1h6kx_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1h6kx_.a3m DATE Mon Mar 8 21:14:43 2010 LENG 77 match states, 77 columns in multiple alignment FILT 120 out of 11572 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.9 EVD 0.4429 1.2328 SEQ >ss_dssp CCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEESSCCCCCCEEEEESSHHHHHHHHHHTTTSEETTEECEEEECCC >sa_dssp ECCBADABCBBEEBDDEDADECADEBCEBDDBCDCEEDEECDABACAEDDDCACCACEEBDDDEBDEDDAEBECCEE >ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEECC >ss_conf 92279966888888989999984147638983201146763047988699999999998389598888999995178 >Consensus xsxtixvxnlpxxxtxxxlxxxfxxxgxvxxxxxxxxxxxxxxxvxfxxxxxaxxAixxlxxxxixgxxixvxxaxG >d1h6kx_ KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMCGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG >UniRef50_UPI00017930EC(3-78:436) PREDICTED: similar to RNA-binding protein 40 (RNA-binding motif protein 40) (RNA-binding region-containing protein 3) n=1 Tax=Acyrthosiphon pisum RepID=UPI00017930EC E=8e-07 s/c=0.72 id=17% cov=99% -SATIIVRHFPPQISSEEKEEFLKYFGaKYVKILTSKTDRRCIAYARFESQEFAEAVIQRLHQKELLGYRLTVELSA- >UniRef50_UPI0001926C48(137-210:494) PREDICTED: similar to polypyrimidine tract-binding protein 1 n=2 Tax=Hydra magnipapillata RepID=UPI0001926C48 E=3e-05 s/c=0.67 id=14% cov=94% ----VIVTNIIYPVTIDVLQQVFQRCGEIQKVVTFIRNDQFHALIQYSNSKEASAAKVLFDKQNIYNgcNTLHVEFS-- >UniRef50_B0W5Y5(527-595:1416) Putative uncharacterized protein n=1 Tax=Culex quinquefasciatus RepID=B0W5Y5_CULQU E=2e-05 s/c=0.73 id=18% cov=87% ----IHLGNLPKGLEESDLRELFKGHavqNIIQRCARDSYHPTAEAYVCFSSKESMIKAIANHHNRYRGKRVM------- >UniRef50_Q6CCK5(8-70:258) YALI0C08635p n=1 Tax=Yarrowia lipolytica RepID=Q6CCK5_YARLI E=0.0007 s/c=0.72 id=17% cov=82% --------GVSPTTSKAEIKKYFSFCGKVKSVAIDEETHT--ATVTFANLEAVRTALLIADG-QIGDSKVSIE---- >UniRef50_B4H4Q3(3-80:555) GL18266 n=1 Tax=Drosophila persimilis RepID=B4H4Q3_DROPE E=3e-06 s/c=0.68 id=16% cov=97% -STRFFLADLPTRATESDLRSLFQDYGHVEQVdlKRKEQEDGPDKIIGFVTlqTDDAHYCLNELNWQKLHGTKLRISVA-- >UniRef50_Q9VHC7(55-135:632) Hrp59 n=13 Tax=Drosophila RepID=Q9VHC7_DROME E=5e-09 s/c=0.77 id=17% cov=101% RNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDEsgkaRGCGIVEFKDPENVQKALEKMNRYEVNGRELVVKEDHG >UniRef50_B6K4I6(2-81:119) U2 small nuclear ribonucleoprotein B n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K4I6_SCHJY E=0.0003 s/c=0.58 id=17% cov=99% ESHTLYVNNLNEKLRKEDLRTSLYLLFSTYGTVLDvvalkTPKMRGQAHIVFHDQTAAAIAKKTLTNFMFFGKEMHIEYA-- >UniRef50_D2V3H1(110-187:292) Predicted protein (Fragment) n=1 Tax=Naegleria gruberi RepID=D2V3H1_NAEGR E=0.0004 s/c=0.58 id=15% cov=92% ---SIFVGDLAPDVNDYMLEQTFRNRYPSVRgakvvMDPKSGISKGYGFVKFADEDDMMRSMTEMQGVYISSRPVKIS---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * 1402 * * * * 1881 * * * * 3571 1911 * * * * * 1 0 * * * * * * 6432 0 0 S 2 * * 5220 4511 * 5677 * * * * * 3775 4841 * * 479 3563 * * * 2 0 * * * * * * 7592 0 0 C 3 2690 2505 5981 * * * 5543 * 3588 * * 3139 * * 3545 2240 3772 3959 * * 3 24 5929 * 0 * * * 8051 1000 0 T 4 6471 4411 * * * * * * 3315 6262 * 4968 * * 3120 3503 878 5538 6260 6141 4 0 * * * * * * 8686 0 0 L 5 * 6160 * * * * * 1483 * 1486 6062 * * * * * * 1964 * * 5 0 * * * * * * 8942 0 0 Y 6 * 6630 * 6856 1750 * 4461 3866 5852 4223 6838 * * 5577 3870 * * 4230 3729 1877 6 0 * * * * * * 8963 0 0 V 7 * 5331 * * 4541 * * 1744 * 3137 3861 * * * * * * 1148 * * 7 12 6878 * 0 * * * 8973 1000 0 G 8 5208 6181 4760 4639 5576 1970 5805 * 2939 5810 * 6448 6143 5777 3200 2860 2829 * * 6860 8 0 * * * * * * 8973 0 0 N 9 * * 4713 * * 2083 4835 * 6942 * * 839 6632 5260 4200 4923 * * * * 9 0 * * * * * * 8988 0 0 L 10 * * * * 5299 * * 1815 * 1010 6452 * * * * * * 2534 * 6664 10 0 * * * * * * 8988 0 0 S 11 4232 * 3499 6749 6869 4336 4354 6867 * * * 3546 1139 5640 6593 2892 5117 * * * 11 0 * * * * * * 8992 0 0 F 12 4796 * 4294 3181 3317 5789 5776 5749 3654 4747 * 5418 2708 4580 4917 3852 4747 * 4175 3088 12 13 6749 * 2807 222 * * 8992 1000 0 Y 13 3789 6551 2737 3593 6035 5068 4870 6172 3915 6118 * 2857 6883 3987 5935 2636 3713 5363 6962 6058 13 0 * * * * * * 8994 0 0 T 14 3305 3722 6374 * 4812 * * 2387 6731 4162 4821 * * * * 6765 2466 1932 5826 6199 14 0 * * * * * * 8994 0 0 T 15 5599 6765 2996 4418 * 5755 * * 4168 6731 * 3781 6904 4166 4650 2852 1389 5841 * * 15 13 6768 * 2000 415 * * 8994 1000 0 E 16 4260 * 3126 1790 * * 6153 5167 2940 4360 * 6707 6451 3762 4499 4154 4297 4283 5275 * 16 0 * * * * * * 8994 0 0 E 17 4151 * 2363 1901 7134 5099 6919 * 3440 * 6791 4102 4641 4498 3988 3574 5006 6051 * * 17 0 * * * * * * 9002 0 0 Q 18 5821 * 2009 1769 7102 5108 5902 6530 4572 5463 4425 5880 * 4180 5728 4257 4017 4508 7428 6561 18 24 6742 7146 0 * * * 9002 1000 0 I 19 6900 * * * 4096 * * 2008 6596 970 5511 * * * 6647 * 6938 3015 * * 19 0 * * * * 0 * 9003 0 1000 Y 20 4648 6557 5637 3614 4906 * 4030 6609 2233 4311 3862 4698 * 4162 3053 4814 4697 4609 6530 3831 20 40 5208 * 1054 948 * * 9002 2480 0 E 21 3348 * 3241 2148 * 6596 5175 6691 2986 * 5782 3653 * 3036 4238 4061 4217 * * 6620 21 0 * * * * * * 9002 0 0 L 22 3883 6530 * 4752 2209 * 4406 2698 5937 2462 4634 * * 5818 6900 5678 5282 3192 * 4384 22 0 * * * * * * 9002 0 0 F 23 4845 5046 * 6903 696 * 7044 6465 * 2722 4287 * * * * 6691 * 4027 * 5900 23 33 6126 6882 2097 384 * * 9002 1778 0 S 24 3644 5498 5885 2971 * 3353 5168 6751 3013 5787 5163 5472 5213 3380 4025 2253 5645 * * 6410 24 35 5890 7201 2221 348 0 * 8992 1686 1000 K 25 4620 * 3841 3851 6911 5144 4636 5270 2928 6491 * 4431 3601 2948 3305 2898 4490 5183 * 6757 25 67 4755 6859 1519 619 0 * 9005 3045 1000 S 26 4452 3910 6840 6864 1808 5451 3748 4638 5934 4206 5555 6901 * 6658 * 4943 5669 4014 6939 2217 26 101 3893 * 1881 457 0 * 8993 4391 1000 G 27 4653 4761 5341 * 4895 700 * * 5943 5791 * 4442 4481 * 5806 4527 6877 4187 * * 27 56 4966 7395 1002 998 * * 9002 2732 0 D 28 4419 5935 3556 3231 6994 3635 5202 4352 3751 5779 7042 3723 2839 4667 4759 3983 3643 4743 * 6900 28 62 4879 6931 2892 209 * 0 9001 2895 1000 I 29 5434 5016 5882 5290 4189 5802 5668 1823 6845 3881 6872 5485 4669 7016 5933 * 4654 1697 * 6754 29 101 4152 6457 2149 369 0 * 8994 4446 1768 K 30 4173 6953 4225 2891 7107 * 5599 3589 2902 4010 6519 5223 5203 4282 3987 3879 4945 2732 * 6494 30 40 6412 5987 2569 266 * 0 8982 1728 1000 K 31 5647 5794 3609 3738 4771 4649 5900 3908 3173 4639 5782 3374 4569 5626 3695 3091 4354 4047 * 6227 31 0 * * * * 0 * 8980 0 2299 I 32 3613 3466 7101 5816 5002 5007 6791 2693 4663 3772 7114 5331 5065 5748 3646 5396 4715 2533 5040 4692 32 53 4797 * 1728 518 * * 9002 2834 0 I 33 5748 5504 3490 4892 4854 6877 5504 3968 2663 4033 5797 4023 5422 4452 2888 6176 4633 3281 * 4377 33 67 4744 6939 2106 381 * * 9002 2848 0 M 34 5273 * 4957 5360 3710 6741 5132 2399 4673 2646 4936 4591 6862 5106 4095 5682 3971 3061 6035 5261 34 38 5274 * 1802 488 * 0 8998 2316 1000 G 35 4713 6808 4205 4376 4031 5321 6458 3266 3789 3910 5262 4454 3520 4084 3435 3756 5938 3685 * 4971 35 49 4916 * 1978 422 * 0 8998 2867 1000 L 36 4342 6551 3986 4380 3956 5385 6074 4837 2812 4409 7422 3656 4228 5250 3357 4252 2763 6158 * 5321 36 34 5413 * 836 1185 0 * 8998 1857 1000 D 37 5896 5885 3200 4184 6877 2687 4114 5573 3318 5399 5269 3432 4530 5393 4560 3456 3555 6937 * 5414 37 103 3861 * 1450 657 * * 9002 4596 0 K 38 4469 6499 4235 4470 3860 5026 4229 6869 2657 4241 * 3225 3803 4441 3258 4125 4408 5966 * 5438 38 29 5650 * 1517 620 * * 9002 2270 0 M 39 4991 6867 4604 3963 4088 3770 4130 5779 3368 6815 5811 3469 3181 4634 3969 2784 4689 7125 6782 5733 39 35 6379 6392 1788 493 * * 9002 1710 0 C 40 6988 4933 6132 5600 7180 5240 5282 5016 2489 6166 * 3825 4596 4413 2401 3839 2914 4217 * 4713 40 133 3939 5468 2158 366 * 0 8978 4219 1000 G 41 3852 4639 5854 * 4609 1626 5430 6831 4079 5245 6613 4783 4865 4589 3043 5241 3984 5005 * 5249 41 19 6234 * 2251 340 406 2028 8957 1793 2952 F 42 5950 4065 5393 5219 2484 5685 5237 4386 5422 4100 4600 4830 5790 4217 4802 4592 5002 4058 6034 2416 42 13 6765 * 2000 415 0 * 8997 1000 1000 C 43 1519 3154 6561 * 5268 2321 6169 4999 6939 7027 6620 * 7047 5964 4546 5782 4483 3759 * 5165 43 63 4559 * 2444 293 * * 9002 3668 0 F 44 5693 5259 * 5942 1392 5204 5319 3790 5245 3223 5504 6596 * * 4290 5684 4596 5673 6961 2972 44 22 7055 7023 1000 1000 * * 9002 1000 0 V 45 3687 5328 * 6605 4613 5552 * 2032 * 3286 4700 6712 * * * * 6553 1318 6778 6776 45 12 6908 * 1000 1000 * 0 8995 1000 1000 E 46 4528 6941 4201 2282 5047 3955 5953 3890 3677 5572 6826 4887 * 3989 4555 4033 3073 4302 7145 5313 46 26 7107 6556 1000 1000 0 * 8995 1000 1000 Y 47 6368 5817 * 6594 789 6763 * 6802 * 5253 3884 * 6553 * 5581 * * 5192 * 2252 47 11 7027 * 0 * * 0 8982 1000 1000 Y 48 3036 6169 4032 2671 5031 5238 5621 5699 2768 5679 5263 5300 3819 6601 4693 3831 3960 4552 * 4849 48 15 6611 * 3170 170 0 * 8982 1000 1000 S 49 * 7143 2246 3725 5601 * 4692 * 5274 7049 6818 2829 * 5635 3721 2524 2433 6769 * * 49 27 5748 * 1034 966 * * 9002 1697 0 R 50 3969 6974 4792 2763 3960 7160 5249 3737 3576 4278 6677 7189 3233 4300 3414 3900 5494 4187 * 5308 50 0 * * * * * * 9002 0 0 A 51 3545 6172 3175 1672 5744 5692 * 6859 3592 * 7045 4657 5181 4841 3607 4071 4120 5547 7047 6862 51 44 5062 * 2955 199 * * 9002 2247 0 D 52 2992 6561 2377 2733 4738 5320 5010 5847 * 4922 7014 5200 * 4419 6740 2181 4813 5819 * 6392 52 12 6893 * 1585 585 * * 9002 1000 0 A 53 792 5265 * 6375 5140 7070 * 4693 6449 4894 4981 * * 7183 6652 3681 4350 3754 * 6030 53 27 6937 6557 1585 585 * * 9002 1000 0 E 54 3367 * 3291 2986 6297 * 6594 3556 2729 4274 5402 4986 6239 3368 4282 4151 4563 4992 6919 6780 54 0 * * * * 0 * 8974 0 1000 N 55 2541 * 3956 3438 5129 6392 6910 4907 2686 4329 6485 4155 * 3964 3253 4152 4551 5962 6449 5543 55 0 * * * * * * 9002 0 0 A 56 486 4514 6449 * 5594 * * 5213 * 4502 * * * * * 5887 6664 3155 * * 56 23 6882 7101 1585 585 * * 9002 1000 0 M 57 4933 5434 * * 3859 * * 2004 3748 2153 3524 * * 6812 5268 * * 2425 6715 6771 57 12 * 6907 * * 0 * 9000 0 1000 R 58 3344 6386 3444 2615 * * 5934 5941 2480 5363 * 4212 * 3306 3564 3595 4086 5889 * * 58 13 6813 * 0 * 0 * 8994 1000 1000 Y 59 2741 * 5449 2857 * 4982 4010 5376 2889 4068 6246 4067 * 3845 3433 3597 5181 6530 * 5569 59 65 6769 4837 1585 585 * * 9002 1000 0 I 60 5657 5086 6467 6865 3414 * * 4236 5665 1179 2579 6823 * * 6873 4717 4418 6714 * 4521 60 11 7032 * 2322 322 956 1046 8972 1000 2929 N 61 4532 * 2501 6478 * 6675 2281 * 5232 6790 * 1793 * 3172 5060 4471 4873 * * 6783 61 67 5080 5967 592 1571 0 * 9003 2220 1733 G 62 * * 6683 4109 6856 1238 4693 * 3885 6860 6521 2445 4885 4368 5269 4090 * * * 5428 62 53 4805 * 2009 412 0 * 8988 2980 1716 T 63 4034 5835 * 4977 4115 7044 3606 4125 2875 4752 6094 5876 6449 5275 3114 3971 3150 5240 6392 3153 63 27 5762 * 2056 397 * * 9002 1841 0 R 64 6561 6485 4524 3060 5331 * 4893 4670 2858 3945 4408 4161 4559 4035 3810 6900 3754 3758 * 3642 64 27 5768 * 0 * * * 9002 1721 0 L 65 * 5700 * 6777 2162 * * 1743 * 1754 5580 * * * * * 6392 3642 7045 4946 65 36 5345 * 1241 794 * * 9002 1780 0 D 66 4524 6057 2972 4257 3874 2364 4602 * 4173 3933 4362 4291 5842 4468 3742 5416 * 6919 6808 4069 66 24 5933 * 585 1585 * * 9002 1768 0 D 67 6777 * 3628 3219 * 941 6885 * 5444 * 7202 2769 6850 5943 6748 4202 6949 * * * 67 55 4744 * 1191 831 * * 8994 2329 0 R 68 4511 5662 * 5710 5912 5986 3473 * 2686 5824 5944 4461 * 4314 1436 3642 6058 6885 * 4774 68 30 5603 * 1689 536 * * 8994 1927 0 I 69 4894 * 5860 4267 * 6850 4555 6042 2816 4975 6004 4294 2307 5570 2395 4734 3494 4566 * 6831 69 0 * * * * * * 8992 0 0 I 70 7017 * * * 6572 * * 1590 * 1291 3810 * * * * * * 2661 6427 * 70 29 5638 * 1919 443 * * 8989 1845 0 R 71 7142 * 5745 4500 5742 5230 4388 5787 2556 * 6956 4944 * 3948 1987 3126 4908 3467 * 4244 71 0 * * * * * * 8932 0 0 T 72 4174 4315 * * * * * 2435 * 2631 6401 * * * * * 5785 949 * * 72 0 * * * * * * 8932 0 0 D 73 * 6374 3043 2117 6078 4785 5682 * 4095 * 6543 3227 * 3360 4531 2130 5609 * * * 73 0 * * * * * * 8786 0 0 W 74 5413 * * 5646 1684 * * 4473 4020 3603 5318 * * * * * * 4399 2730 2101 74 0 * * * * * * 8705 0 0 D 75 731 * 4269 3987 * 5471 * * 6013 * * * * * 5809 2140 * * * * 75 0 * * * * * * 8294 0 0 A 76 3529 * 4730 5817 * 5352 5786 4290 4832 * * 4141 3345 * 1693 3323 3241 * * 4079 76 0 * * * * * * 7861 0 0 G 77 * * * * * 0 * * * * * * * * * * * * * * 77 0 * * 0 * * * 6100 0 0 //