HHsearch 1.5 NAME d1cvja2 FAM FILE d1cvja2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1cvja2.a3m DATE Mon Mar 8 18:24:39 2010 LENG 89 match states, 89 columns in multiple alignment FILT 116 out of 10365 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.9 EVD 0.4256 0.3511 SEQ >ss_dssp CHHHHTTTTEEEEESCCSSCCHHHHHHHHHTTSCEEEEEECCBTTBCCSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEEECCCTTTC >sa_dssp EEDEEDCDABACADDABDEBDDEDADECADECCEBDECEBCDDEEDBCCDACABAEDECABEDACECBDDDDCEEDCBDABECBDEEEE >ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEECCEEEEEEECCCCCCC >ss_conf 98542689638985898888989999997320124421001147871110122224469999999974890968869999845635679 >Consensus PxxrxxxxxxifVxnLpxxxtexxlxxxfxxxgxxxxxxxxxxxxxxxxxafvxfxxxxxaxxaixxlxgxxxxgrxixvxxaxxxxxr >d1cvja2 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER >UniRef50_B7G0X4(18-103:837) Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G0X4_PHATR E=0.0006 s/c=0.53 id=18% cov=51% ---------------------------------------LLKKDGKSRRMGFCGFATPSTAQVCVRQLDKAYCRTNKLVVEFA------ >UniRef50_B9RFC0(115-201:444) Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9RFC0_RICCO E=2e-05 s/c=0.57 id=17% cov=72% ----------VLVTGLPSSASWQDLKDHMRQAGD--VCFSRVFPGRGGKTGIVDYKNYDDMKHAIKKLDDSEFRN-------------- >UniRef50_C6TA25(17-105:265) Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TA25_SOYBN E=7e-13 s/c=0.84 id=16% cov=97% ----RSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDpqtGSVLHIELARSNSRR >UniRef50_Q4D4P1(68-154:365) RNA-binding protein, putative (Fragment) n=1 Tax=Trypanosoma cruzi RepID=Q4D4P1_TRYCR E=8e-06 s/c=0.59 id=12% cov=90% ----------LYIRNIPITVPQAQVERFLSTFGTLAFCaMREDHYGNPVWVVYAEYDCLSCSKNALQRLHGSseHFYGPPVMVKYADTDEAK >UniRef50_UPI0000DA2A4C(124-201:225) PREDICTED: similar to Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) n=1 Tax=Rattus norvegicus RepID=UPI0000DA2A4C E=9e-06 s/c=0.66 id=17% cov=88% -----SPSATLHLSNILPSVSDDDLRSLF--FSNGGVVKGFRFFQKECKMALIRMGSVEEAVQMLIELHNRDLDeNHHLRVSFSK----- >UniRef50_Q54GU2(291-382:1235) Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54GU2_DICDI E=0.0002 s/c=0.51 id=15% cov=97% ----QKKSTSVIVRGIPNQCSENDIKQLFSYYGNIKIEKIeKSNTKNKTLNAYIEFENEDIVNEVSTRGSTFTINNERvsIHVEYlddiFKPKNEK >UniRef50_UPI0000D55FE5(238-315:506) PREDICTED: similar to AGAP004982-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D55FE5 E=0.0007 s/c=0.58 id=15% cov=76% ----------LYVGNLAQEITKED---MVKTYPTSRRIDIGYAKKMKYtRYAFVSFKNVSESIDAFKKTHSTQMYSKSLIV--------- >UniRef50_C9S714(144-247:300) RNP domain-containing protein n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9S714_VERA1 E=2e-05 s/c=0.48 id=17% cov=101% PSRRRVASkTKVMVANLPYDLTEEKLKELFEAYSPSSAKIALRPIPRFMIKKLQARGEPRKArgfgfvtlaseelqQKAVSEMNGKEIEGREIAVKVAID SPDK >UniRef50_UPI000180D248(74-161:386) PREDICTED: similar to musashi 2 n=1 Tax=Ciona intestinalis RepID=UPI000180D248 E=7e-05 s/c=0.55 id=15% cov=99% PAQMVTRTKKIFVGGLSANTVVDDLKNYFGTYGKVEDAMLMFDKQTNRHRGFgFVTFDNEEPVEKVCEIHFHEINNKMVECKKAQPKE-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 6413 0 0 S 2 2376 * 4127 * * 4974 * 5124 * 4077 * 4909 2398 * * 1696 3340 * * * 2 0 * * * * * * 7293 0 0 L 3 2822 * * 5053 3569 5130 * * 3641 3279 * 2592 3172 4169 4499 5093 * 2983 * * 3 0 * * * * * * 7657 0 0 R 4 5314 * 5341 3841 * * * * 2660 * * * 3199 3391 1114 5079 5248 * * * 4 0 * * * * * * 7717 0 0 K 5 5550 * 4440 3091 * 5483 * * 2280 4053 * 5202 4100 2472 2529 3933 * 5483 * * 5 32 5512 * 0 * * * 8086 1000 0 S 6 4127 * 5799 5805 4631 5676 * 5946 4368 5857 5823 3454 4284 3632 4121 1524 3827 4367 * * 6 76 * 4288 * * * * 8326 0 0 G 7 3537 * 4752 2548 5698 1938 5803 * 3863 * * 3818 4710 3907 * 3483 4863 5809 * 5550 7 53 * 4787 * * 568 1619 8350 0 2404 V 8 5770 5033 5155 4869 5816 4359 5990 4955 4945 4818 4916 3624 3160 4798 4921 2300 4011 3373 * 4327 8 75 4304 * 843 1176 552 1654 8461 1926 2251 G 9 4662 * * * * 4047 5907 4906 3145 4607 * 1985 6045 * 2514 4049 2651 4901 * * 9 49 4901 * 1076 928 0 * 8529 1811 1000 N 10 5061 * 5742 * * 6031 5246 4990 2149 * 6061 2867 * 5351 3508 3243 2066 6258 5957 6082 10 64 4530 * 1492 634 * * 8560 2305 0 I 11 6824 6483 * * * * * 2004 * 1249 5734 * * * * * * 1781 * * 11 0 * * * * * * 9053 0 0 F 12 * * * 6709 1306 * 4378 3400 6588 5277 5316 * * * 6568 * * 5244 5171 1657 12 0 * * * * * * 9053 0 0 I 13 5575 5535 * * 5060 * * 1957 * 3156 4654 * * * * * * 949 * * 13 0 * * * * * * 9056 0 0 K 14 4095 6776 5262 5928 6715 1692 5768 * 2507 * * 4497 * 6170 3455 2733 3700 * * * 14 0 * * * * * * 9056 0 0 N 15 6890 * 4422 7082 5981 2017 5228 * 5890 * * 840 * 5155 6868 5200 * * * 6830 15 0 * * * * * * 9068 0 0 L 16 * 6452 * * 3626 * * 2260 * 818 5915 * 5981 * * * * 3464 * 6848 16 13 6777 * 2585 263 * * 9068 1000 0 D 17 3497 * 3120 6381 * 4848 5233 * 5714 * * 3656 1123 * * 2841 5275 * * * 17 0 * * * * * * 9068 0 0 K 18 4945 * 4521 3571 3165 6734 5183 5900 3749 * * 5963 2181 4290 4891 4564 4241 6807 4653 2888 18 0 * * * * * * 9068 0 0 S 19 4738 * 2524 2869 6571 4467 6837 * 3860 4879 * 3284 * 4469 5122 2991 3021 * 5979 4537 19 13 6805 * 0 * * * 9068 1000 0 I 20 3139 4134 * * 5243 7327 6181 2860 * 3519 4496 * * 6442 * 6756 2393 1963 4832 6493 20 49 4906 * 0 * * * 9068 2362 0 D 21 * * 2962 4896 * 4541 * * 3494 * * 2916 5181 5954 5345 3186 1370 6798 * * 21 13 6777 * 2322 322 * * 9068 1000 0 N 22 4361 * 2869 1342 * 5212 5836 5784 4520 * * 4954 4756 3848 5411 3891 5846 5158 4980 7162 22 12 6942 * 0 * * * 9068 1000 0 K 23 3527 * 2816 2125 * 4950 4834 6011 3278 * 6830 4771 4960 3197 4168 3858 5918 5146 * * 23 11 7045 * 0 * * * 9068 1000 0 A 24 4597 * 1982 1961 5562 6571 4862 5923 3857 5397 5914 5231 * 2871 5795 5073 5190 6895 * 6624 24 24 6795 7039 2000 415 * * 9068 1000 0 L 25 * 5869 * * 4608 * * 1998 * 1129 4833 * 6800 * * * 6177 2505 * * 25 11 6994 * 2322 322 0 * 9070 1000 1000 Y 26 5220 6566 6984 3409 5977 5836 5341 4600 2108 3750 4808 6842 * 5066 1952 4133 5501 * 7049 4809 26 25 5870 * 1151 863 * * 9068 1756 0 D 27 3328 * 2742 1987 * 5928 6024 6605 3274 * 7119 3411 6779 3373 3569 4506 6664 * * 6942 27 72 4368 * 672 1425 * * 9068 3338 0 T 28 3434 * 5914 5288 2535 * 4930 2783 * 1939 5432 6795 * 5138 * 6698 6062 3975 * 3250 28 17 6442 * 2000 415 * * 9068 1000 0 F 29 * 4606 * * 700 5914 * 4799 6608 2414 4178 * * * * * 7002 6964 * 5508 29 24 6927 6962 0 * * * 9068 1000 0 S 30 3628 * 5381 2683 * 3691 5234 6769 3177 5905 5806 3539 6799 4201 3691 2236 5221 6044 * * 30 75 4305 * 2806 223 * 0 9063 3682 1000 A 31 3977 * 5300 3597 * 3802 6696 5938 2238 5709 * 4426 4130 2762 3187 4029 4043 5879 * * 31 78 4934 5661 2910 206 0 * 9063 2736 1000 F 32 4107 4504 * 5932 1955 4810 3946 3793 5354 4874 6369 6793 * 4988 4885 5365 6028 3593 6575 2532 32 12 6922 * 0 * * 0 9041 1000 1704 G 33 4317 5862 5224 4683 4273 818 * 5210 5190 6028 5950 6822 4320 * 6501 5254 5656 5169 * 5768 33 77 4947 5659 2513 278 963 1037 9041 2690 1704 N 34 4422 6775 4048 2987 5338 4343 4948 3942 3781 6881 7106 4432 2895 4446 3763 3836 4070 4335 6578 6979 34 50 5375 6671 1259 780 * 0 9032 1838 2373 I 35 5263 6330 5584 4406 4430 5236 6488 2017 5309 3282 * 5724 4297 * 6962 4355 4296 2060 * 5893 35 0 * * * * 398 2054 9021 0 2837 L 36 4689 4547 4580 3601 5236 4762 * 3652 3735 4262 6953 4276 5962 4869 4072 3242 4058 2551 * 5772 36 31 5577 * 1640 558 0 * 9045 1672 1000 S 37 4471 5958 3568 3756 5508 3923 6103 3886 2906 5221 5604 3578 6858 4939 3944 3721 4180 4260 * 4147 37 62 5903 5295 1000 1000 * * 9068 1854 0 C 38 4040 3313 5462 4576 4746 6991 5794 2444 4846 3807 * 5144 6100 7033 4822 5303 4375 2078 5943 6880 38 89 4831 5321 1088 917 1445 660 9040 2584 2267 K 39 5332 5714 3710 4658 4228 6697 5197 3586 2850 3886 4725 4177 4819 4948 3499 5720 5281 2982 6582 5097 39 81 4884 5595 2953 199 2148 369 9033 2910 3147 V 40 4866 5898 4463 4475 3870 * 5454 2464 4598 3348 3934 4906 5721 5539 3045 5223 4630 3588 6531 5317 40 37 5734 7258 1743 512 * 0 9006 1827 3623 V 41 4255 6741 5244 4514 6662 5827 * 3063 3487 3397 5841 5762 2748 4643 3565 5265 6526 2662 6237 5685 41 35 7017 5928 1585 585 800 1233 9005 1000 3841 C 42 5570 5519 3594 5832 4808 4764 5877 3259 2965 4380 5813 4021 5171 5283 2558 4255 4128 4362 * 5273 42 40 5180 * 1703 529 1192 831 9033 2400 2860 D 43 5567 * 2996 4629 6891 3980 4023 5234 3066 4965 5831 3343 4517 4349 3197 4022 3719 5084 * 5880 43 53 5270 6644 733 1328 805 1226 9048 2373 1874 E 44 4576 5963 3310 4349 5029 4503 4757 4151 3062 4193 6456 4410 4082 6548 3252 4447 4060 5388 6705 3692 44 46 4988 * 834 1188 * 0 9050 2730 1804 N 45 4619 * 3966 5076 4170 1986 3992 * 3097 6371 5952 3205 4638 4922 4167 3933 5194 * * 5660 45 79 4737 6015 2150 368 0 * 9050 2852 1804 G 46 4315 * 4394 5204 5409 3463 6752 4907 3026 4037 6817 3856 4000 4070 3240 3636 3348 5393 * 5250 46 34 5999 7006 2105 382 * 0 9058 1731 1758 S 47 4851 6798 4339 4713 4782 3032 4533 5786 2961 * 7001 3382 3579 4873 4615 2227 4868 * 6619 * 47 64 4516 * 1458 653 1580 588 9053 3397 2375 K 48 4182 6788 5426 5111 4601 4767 * 5277 2449 5104 5560 4194 5075 3740 2440 3497 4699 4209 * 5509 48 59 4640 * 585 1586 942 1061 9060 2749 1767 G 49 4409 * 4952 * 4478 1681 4052 5296 4231 5141 5971 3926 4659 4939 3399 4882 4522 5369 6036 5016 49 26 5803 * 1494 632 * 0 9063 1724 1000 Y 50 5236 4490 4918 5794 2395 5146 4680 3870 4670 5840 4898 6794 6817 6051 4187 4565 3694 3669 5699 2676 50 27 6729 6802 0 * * 0 9063 1000 1000 G 51 1274 3546 * * 6856 1969 * 6512 5577 6714 6615 * * * 4267 5106 5593 3755 * 6738 51 0 * * * * * 0 9048 0 1804 F 52 4276 3996 6147 6905 1186 4440 5736 4504 6748 4471 6989 * * 5671 6936 * 4902 5408 4962 2880 52 15 6620 * 1000 1000 0 * 9048 1000 1804 V 53 4012 3726 * * 3475 4917 * 2408 * 4210 5175 * * 6731 * 6245 6875 1279 * 5269 53 0 * * * * * * 9068 0 0 H 54 4106 5203 4010 2128 4555 4383 5099 5113 4139 5241 * 4632 * 4030 5249 4430 2882 3910 * 5980 54 0 * * * * * * 9068 0 0 F 55 6466 5064 * 6754 982 6245 * 5743 * 4369 4270 * * * 6731 * 6865 3728 6698 2265 55 30 5596 * 1000 1000 * * 9068 1728 0 E 56 3054 5735 3461 3124 4173 5863 * 5398 2963 4461 4695 5594 4763 6804 4268 3585 3817 4321 * 5379 56 0 * * * * * * 9068 0 0 T 57 6245 6932 2800 3938 4088 5987 5643 * 4773 * 6205 3112 * 6915 4068 2011 2655 * 6452 5419 57 0 * * * * * * 9068 0 0 Q 58 4076 * 4774 3173 4568 6815 4733 4387 3553 4050 6830 5214 2359 4612 3812 4269 4853 3860 * 6245 58 13 6830 * 1000 1000 * * 9068 1000 0 E 59 4441 * 2746 1829 * 5927 6779 5900 3688 5314 5557 3899 5772 3547 3902 4176 5220 5680 6607 7037 59 49 4906 * 1404 685 * * 9068 2766 0 A 60 3061 5212 1858 2474 6046 5080 5876 5215 5177 4667 6607 3892 * 4869 * 3724 4835 5710 * * 60 21 6097 * 1000 1000 * * 9068 1725 0 A 61 869 4593 * 5857 5568 4891 * 5673 * 4351 5352 * * 7130 * 4465 3643 3140 * * 61 27 5776 * 3144 173 * * 9068 1679 0 E 62 2978 5657 4669 2906 * 5680 6921 4259 2859 3918 5068 4650 * 2880 4493 5963 4428 3892 * 5890 62 11 7083 * 3000 193 * * 9068 1000 0 R 63 2911 6642 3636 3627 * * 5818 4634 2568 4114 6674 3545 * 3757 3095 4882 5213 4659 * 5366 63 13 * 6770 * * * * 9068 0 0 A 64 826 3867 6860 6865 6539 5987 * 4447 4689 4110 6962 * 6244 * 5854 4719 6963 3371 * * 64 0 * * * * * 0 9053 0 1000 I 65 3763 6806 6244 6159 5013 * 6539 1931 4418 2043 3757 * * 4496 5882 * * 2796 6977 6701 65 38 * 5264 * * * 0 9053 0 1000 E 66 3435 6717 5056 2492 5771 5193 5550 5228 2803 4639 6974 3715 6813 3680 3574 3124 5287 5819 * * 66 60 5490 5780 2076 391 0 * 9023 1714 2629 K 67 2647 * 6540 2612 * 5458 5756 3823 3101 3917 5864 4497 * 4311 4041 3916 3650 5803 * 4835 67 37 * 5308 * * 0 * 9069 0 1722 M 68 5698 4680 * 6032 4408 4130 * 5248 5147 1246 2569 * 6884 6586 5096 5047 4790 6946 * 4185 68 51 6005 5712 1610 572 0 * 9058 1684 2360 N 69 * * 2151 5175 * 6595 2865 6930 5185 * * 1450 5113 3737 4728 4563 6169 * * * 69 91 4465 5983 1642 557 0 * 9046 3438 1784 G 70 * * 4438 4886 6727 1093 5992 * 3409 6848 7032 2854 4595 4456 4358 4983 6638 * * * 70 39 5229 * 682 1408 0 * 9059 2347 1695 M 71 3644 5393 * 4872 3866 * 3926 4656 2548 3413 5361 5476 6630 5194 4426 4746 2641 4610 * 4215 71 39 5225 * 728 1336 * * 9068 2608 0 L 72 7154 * 4759 3110 4811 * 3892 4657 3119 3726 5715 4479 4242 3028 6952 4674 4492 3660 4975 3942 72 13 6805 * 0 * * * 9068 1000 0 L 73 6630 5052 * * 2144 * * 2045 6798 1966 4967 * * * * * * 3043 4909 4656 73 51 4841 * 372 2139 * * 9068 2576 0 N 74 6053 4984 2924 3558 4356 2566 4177 * 3593 3754 4874 3832 5159 5356 3497 6830 * * 5790 4857 74 33 5482 * 2051 398 * * 9067 2456 0 D 75 * * 2753 4783 6557 695 6841 * * * 6775 3334 * 5658 6172 5159 6929 * * * 75 43 5104 * 1465 649 * * 9067 2361 0 R 76 4980 5780 7092 4543 5212 6154 4243 6775 2301 6513 * 4720 6030 4410 1349 4620 6639 6601 * 5093 76 27 5758 * 2941 201 * * 9060 1765 0 K 77 6824 * 5799 4068 5988 * 5225 4357 2402 5648 5893 4725 2103 4074 2947 4322 4082 5725 * 6835 77 14 6743 * 1585 585 * * 9060 1000 0 V 78 * 6404 * * 5399 * * 1519 * 1431 3666 * * * * * * 2592 * * 78 0 * * * * * * 9040 0 0 F 79 4547 * 5190 5729 5479 6527 5235 4200 2410 4215 4840 4542 * 4621 2221 4345 5134 3955 * 3649 79 26 5814 * 2019 409 * * 9040 1728 0 V 80 3814 4589 * * 6495 * * 2841 * 2499 5720 * * * * * 6396 919 * * 80 26 6779 6831 2585 263 * * 9024 1000 0 G 81 3993 6439 2859 2732 6468 4788 6729 6620 2639 5767 6771 3350 * 3939 3304 3331 6817 * * 6722 81 16 6547 * 1000 1000 0 * 9001 1000 1000 R 82 6984 * * 4327 2698 * 4862 4241 4070 3597 4932 * 3336 5975 2920 * * 4276 3684 2742 82 13 6767 * 0 * * * 9009 1000 0 F 83 982 6003 5205 * 5776 4605 * 5721 5157 * 5533 5145 * 6954 5764 2536 6603 4353 6677 5211 83 29 5640 * 1778 497 * * 8992 1677 0 K 84 5107 * 3794 3861 * 6636 4627 4358 2045 4433 6108 3718 * 3859 3033 4277 3937 5228 * 5882 84 31 5562 * 2577 265 * * 8987 1800 0 S 85 4229 * 3630 2669 * 4668 6162 * 4118 * * 4606 1880 6676 3850 3084 3705 6464 * * 85 0 * * * * * * 8881 0 0 R 86 * * 3743 5067 * * 6414 * 1681 * * 4313 4834 2787 2062 3650 5478 * * * 86 0 * * * * * * 8723 0 0 K 87 4596 * 5342 2654 * 5387 6455 * 2898 * * 3680 2704 3601 3217 3026 4377 6236 * * 87 0 * * * * * * 8613 0 0 E 88 3201 * 2881 1844 * * * * 3437 * * 4639 5502 2555 3157 4636 * * * * 88 0 * * * * * * 8115 0 0 R 89 * * * * * * * * 1550 * * * * * 603 * * * * * 89 0 * * 0 * * * 7209 0 0 //