HHsearch 1.5 NAME c9wmuF_ FAM FILE c9wmuF_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9wmuF_.a3m DATE Sun Dec 28 00:27:21 2025 LENG 84 match states, 84 columns in multiple alignment FILT 56 out of 58 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.3 EVD 0.4399 1.1986 SEQ >ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEHHHEEEC >ss_conf 976553432246311222333345354554415984266378873899999999972998689999679997888667525539 >Consensus exxixxxxrxtxpxLTkfExARIiGxRAlQisxgApxxvxxxxxxdplxIAxxElxxxxiPixIrRxlPxGxyEdxxvxeLxxd >c9wmuF_ ELAILKEERTTTPYLTKYERARILGTRALQISMNAPVLVDIEGETDPLQIAMKELSQRKIPLVIRRYLPDGSYEDWGCDELIVD >UniRef50_A8MBW4(23-94:104) RNA polymerase Rpb6 n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MBW4_CALMQ E=2e-16 s/c=1.21 id=39% cov=85% -----------PPRITKYEFAKIIAVRTRQLMDGAPPLVNPKeiGTSDPVAIAFEELKRGLLPFIIIRRLPNGKRVEYTLKEL--- >UniRef50_B1L6H7(2-66:84) DNA-directed RNA polymerase, subunit K n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L6H7_KORCO E=2e-08 s/c=0.93 id=41% cov=67% -----------PKRLTKFEKVRIISVRAQQIATGSPLFLEeneiPEGLTDPIELAKLELEKGKLPILIGR------------------ >UniRef50_Q387N1(24-123:131) DNA-directed RNA polymerase subunit, putative n=4 Tax=Trypanosoma RepID=Q387N1_9TRYP E=2e-19 s/c=0.97 id=44% cov=96% ----PLKDRKSSVYLTKYEVARIIGERARQIVNGTSVLLDSQNgcgtgnslelaegcadpfaaSVDPIHITKLELLQGRIPMIVRRTWPDGRTENIPVNE LKVD >UniRef50_A6UVZ8(4-55:61) RNA polymerase Rpb6 n=7 Tax=Methanococcus RepID=A6UVZ8_META3 E=3e-08 s/c=1.15 id=47% cov=63% ---------------TKFEKARLLGSRALQISDGAFATVESEEKSSGV-IAMNEFKQGKLPLKVKKPL---------------- >UniRef50_Q5UQ32(180-259:396) DNA-directed RNA polymerase subunit 6 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RPO6_MIMIV E=1e-21 s/c=1.30 id=43% cov=94% ---IPDNERETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEGMHPAKMAFVELTAKMTSFIVRRHLPGKKYEDWRIDEL--- >UniRef50_A0RUC3(73-152:155) DNA-directed RNA polymerase, subunit K/omega n=1 Tax=Cenarchaeum symbiosum RepID=A0RUC3_CENSY E=4e-17 s/c=1.11 id=45% cov=95% ELTSDKKILIGPPVLTRFEKARIMGARALQLSLGAPPFIEIPADARtSLDIAMGELEKRIIPIVIRRVLPNGDYQNIPIS----- >UniRef50_P0C9D6(64-145:151) DNA-directed RNA polymerase subunit 6 homolog n=8 Tax=African swine fever virus RepID=RPB6_ASFM2 E=1e-13 s/c=0.94 id=36% cov=93% ---IPDNERITSNVLTTFEATRLVAVRAQQLAINGSTMLKKKYSS-PIDIAKQELFNRKIPLLVMRcikVTPEGQkiVEIWNPREM--- >UniRef50_B8D5H9(10-86:106) DNA-directed RNA polymerase subunit K n=1 Tax=Desulfurococcus kamchatkensis 1221n RepID=B8D5H9_DESK1 E=2e-12 s/c=0.96 id=39% cov=89% -------EEVFSKRLTRFEIARVVGARALQLSMGAPPIIDVSNLpvKDPVYIAVNELITGLLPMSIRR-INNGREELVPVGKLL-- >UniRef50_D2TEV8(6-76:81) Putative RNA polymerase Rpb6 n=2 Tax=dsDNA viruses, no RNA stage RepID=D2TEV8_9VIRU E=2e-11 s/c=0.99 id=34% cov=85% ----------TSSYLTRFELARLAGIVELQLQDNKTSVIDSSKTLH--DQAVDIVLNKETDIVIRRILPGDSYEDVSLKTLE-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * * 0 * * * * * * * * * * * * * * * * 1 0 * * * * * * 1775 0 0 L 2 * * * * * * * * 1199 1400 2430 * * * * * * * * * 2 0 * * * * * * 1935 0 0 A 3 1507 * * 3094 * 3517 * * 2071 * * * * * * * 2281 * * * 3 0 * * * * * * 1960 0 0 I 4 * * * * * * * 807 * * * * * * * 3190 * 1649 * * 4 0 * * * * * * 2619 0 0 L 5 2630 * 3593 * * * * * 3349 5274 * 4255 856 5234 * * * * * * 5 0 * * * * * * 2727 0 0 K 6 4080 * 2038 * * 4679 * * 1843 3585 * 2744 * 5234 5189 4210 4677 * * * 6 0 * * * * * * 2727 0 0 E 7 * * 1987 3673 * * 4976 * 2161 * * 2166 * 5367 * 2814 5345 * * * 7 0 * * * * * * 2778 0 0 E 8 * * 3101 1175 5002 * * 4178 2225 5306 * * * 3982 * * 4864 5868 * * 8 0 * * * * * * 3091 0 0 R 9 * * * 4686 * * 4340 * 2815 4584 * * * * 458 * * * * * 9 0 * * * * * * 3119 0 0 T 10 6095 * * 3484 4357 * * 1569 2848 * 4109 6521 * * 3756 4951 3277 3427 * * 10 0 * * * * * * 3099 0 0 T 11 5029 * * * 3941 3314 * * * * * 6645 * * * 2917 597 * * * 11 0 * * * * * * 3274 0 0 T 12 5321 * 3735 * * 4489 * * * 4451 * * 1714 * * 1824 2450 * * 4669 12 0 * * * * * * 3329 0 0 P 13 * * * 5553 5416 * * * 2880 4489 * 4367 887 * 3599 3845 * 4902 * * 13 0 * * * * * * 3329 0 0 Y 14 * * * * 3294 * 5295 3121 3650 * * * * * 2663 * 5423 3878 5654 1290 14 0 * * * * * * 3368 0 0 L 15 * * * * * * * 3625 * 454 2542 * * * * * * * * 5848 15 0 * * * * * * 3361 0 0 T 16 * * * * * * * * * * * * * * * 4950 47 * * * 16 0 * * * * * * 3369 0 0 K 17 * * * * * * * * 747 * * * * * 1844 5597 4571 * * 3989 17 0 * * * * * * 3409 0 0 Y 18 * * * * 980 * * * * * * * * * * * * * * 1021 18 0 * * * * * * 3409 0 0 E 19 * * * 0 * * * * * * * * * * * * * * * * 19 0 * * * * * * 3409 0 0 R 20 4571 * * * 5107 * * 2791 1602 3967 * * * 5536 1807 * 5852 3913 * * 20 0 * * * * * * 3409 0 0 A 21 212 * * * * * * * * * * * * * * * 4571 3400 * * 21 0 * * * * * * 3409 0 0 R 22 * * * * * * 5497 * 4101 * * * * * 149 * * 5797 * * 22 0 * * * * * * 3409 0 0 I 23 * * * * * * * 721 * 2367 * * * * * * * 2326 * * 23 0 * * * * * * 3409 0 0 L 24 3967 * * * * * * 1371 * 1399 4465 * * * * * * 3000 * * 24 11 * 7084 * * * * 3409 0 0 G 25 3811 * * * * 251 * * * * * * * * * 3504 * * * * 25 0 * * * * * 0 3410 0 1000 T 26 1639 * * 3908 * * * 3391 * * * * * * * 4582 1793 2422 * * 26 0 * * * * * 0 3410 0 1000 R 27 * * * * * * * * * * * * * * 95 * * 3966 * * 27 0 * * * * * 0 3410 0 1000 A 28 193 * * 3966 * * * * * * * * * * * 4950 5103 * * * 28 0 * * * * * 0 3410 0 1000 L 29 * * * * 5421 * * 5780 3882 631 5954 * * 2978 4121 * 5474 * * 5528 29 0 * * * * * 0 3410 0 1000 Q 30 * * * * * * * * * * * * * 0 * * * * * * 30 0 * * * * * 0 3410 0 1000 I 31 * * * * 3984 * * 828 * 1421 * * * * * * * * * * 31 0 * * * * * 0 3410 0 1000 S 32 1754 * * * * * * * * * 5103 3987 * 3966 * 946 * 5144 * * 32 0 * * * * * 0 3410 0 1000 M 33 5478 * 3014 * * * * 3571 5903 3275 1358 3761 * 6053 * 3822 5542 * * 3668 33 0 * * * * * 0 3410 0 1000 N 34 * 5566 * * * 542 * * * * * 1777 * * * * * * * * 34 0 * * * * * 0 3410 0 1000 A 35 353 * * * * 4568 * * 3966 * * 5088 * * * 4232 5144 * * * 35 49 4917 * 0 * * 0 3410 1000 1000 P 36 4703 * * * 5024 * * * 4371 5970 * * 634 5842 5869 3453 3965 * * 4948 36 0 * * * * 0 * 3410 0 1000 V 37 3341 * * * * * * 3324 * 3729 4708 * 1768 * * 3966 4569 1795 * * 37 62 4565 * 961 1041 * * 3409 1386 0 L 38 * * * * 3185 * * 3403 * 1446 2798 * * 5964 * 4708 2892 3966 * 4977 38 26 5784 * 3000 193 * * 3409 1000 0 V 39 * * 5597 * * * * 1442 4922 2942 * * * * * * 4844 1274 * * 39 0 * * * * * * 3409 0 0 D 40 * * 1370 1962 * 4922 * 5597 3216 * * 4530 2870 6031 * * * * * * 40 31 5542 * 2000 415 * * 3409 1000 0 I 41 * * 6110 * * 3871 * 2481 3972 2526 * 5784 3465 * * 2800 3074 2946 * * 41 22 6056 * 0 * * * 3409 1000 0 E 42 * * 3432 1926 * 4063 * * 2865 * * 4649 3404 4164 * 2545 4708 4400 * * 42 176 3606 4929 879 1132 * * 3409 1902 0 G 43 5933 4871 5550 2821 * 1289 * * 2749 * * 3131 * * * 4748 4825 * * 4572 43 195 3683 4356 2917 205 0 * 3367 1791 1254 E 44 * * 3948 2156 * 3410 5484 5497 3897 3788 6279 * * 4718 6070 2293 2617 * * * 44 181 3085 * 3080 182 0 * 3392 2248 1600 T 45 3878 * 5975 * * * * 4266 5695 2886 3987 5574 * * 4597 2488 1781 3324 * 6056 45 112 * 3748 * * * * 3409 0 0 D 46 * * 628 5896 * * 2874 * * * * 4379 * * 4822 3812 5128 * * 5935 46 158 4822 3869 0 * 0 * 3293 1100 1609 P 47 4659 * * * * 4957 * * * * * * 362 * * 3074 * 4987 * * 47 0 * * * * * 0 3242 0 1000 L 48 3897 * * * * * * 1955 * 1016 6292 * * * * * * 2575 * * 48 47 * 4957 * * 0 * 3242 0 1000 Q 49 4090 * 1835 3739 * 6099 5139 4973 3378 3432 4706 4696 * 3371 4700 4978 6005 4542 * 5625 49 0 * * * * 0 * 3343 0 1000 I 50 5145 * * * * * * 482 * 4537 3303 * * 3966 * * * 4406 * * 50 0 * * * * * * 3409 0 0 A 51 91 * * 5969 * * * * * * * * * * * 5876 5145 * * * 51 0 * * * * * * 3409 0 0 M 52 4988 * * 2741 3440 * * 4792 2834 3864 2423 5493 * 5902 3344 6242 5784 3586 6506 4951 52 0 * * * * * * 3409 0 0 K 53 6319 * 3966 1996 * 5960 * 5597 2147 3353 5493 4323 * 4087 4553 * * 3694 * 4023 53 0 * * * * * * 3409 0 0 E 54 * * 4708 156 * * * 3966 * * * * * * * * * * * * 54 0 * * * * * * 3409 0 0 L 55 * * * * 2647 * * 4947 * 569 * * * * * * * 3510 * 4440 55 0 * * * * * * 3402 0 0 S 56 4448 * 4118 2569 4566 * 5565 5689 2203 2915 * 5286 * 6600 3243 4720 3974 5180 * 5336 56 0 * * * * * * 3402 0 0 Q 57 2579 * * 3333 * * * * 3362 4890 * 2369 * 1933 3235 5557 5689 * * * 57 0 * * * * * * 3402 0 0 R 58 * * 5846 * * 1427 * * 1698 * * 3178 * * 2381 * * * * * 58 0 * * * * * * 3402 0 0 K 59 4704 * * 3961 * * * 3518 1326 3050 3974 * * * 4166 5565 6453 2852 * * 59 0 * * * * * * 3402 0 0 I 60 * * * * * * * 927 * 1926 5866 * * * * * 2796 4327 * * 60 0 * * * * * * 3402 0 0 P 61 * * 3614 * * * * * * * * * 293 * 4705 3974 * * * * 61 0 * * * * * * 3402 0 0 L 62 * * * * 2061 * * 1401 * 1943 3350 * * * * * * 5407 * * 62 0 * * * * * * 3402 0 0 V 63 * * 4817 * * * * 1376 3431 3178 * * * * * 3962 2306 3189 * * 63 0 * * * * * * 3402 0 0 I 64 * * * * * * * 927 * 5565 * * 4947 * * * * 1249 * * 64 0 * * * * * * 3402 0 0 R 65 * * * * * 5504 * 3463 2925 * 4566 * * * 606 * * 4928 * 5407 65 0 * * * * * * 3402 0 0 R 66 * * * * * * * * 5007 * * * * * 46 * * * * * 66 114 4267 5385 1585 585 * * 3394 1000 0 Y 67 * * * 5134 5130 * 3373 3536 5252 * * * 4971 * 2740 * 3795 2879 5207 1656 67 0 * * * * 0 * 3426 0 1000 L 68 * * * * 3889 * * 5093 * 624 5174 * * * * * 3215 * 3381 5452 68 0 * * * * * * 3448 0 0 P 69 * * * * * * * * * * * 5017 166 4854 * 4528 * * * * 69 0 * * * * * * 3440 0 0 D 70 * * 1330 3668 * 2554 * * * * * 1650 * * * 4854 * * * * 70 0 * * * * * * 3440 0 0 G 71 * * 3956 * * 385 6062 * 3225 * * * * 5542 * 5241 * * * * 71 0 * * * * * * 3440 0 0 S 72 4541 * 3916 5665 * 4879 * * 2022 * 5974 5379 * 3765 3618 1701 3723 * 6316 * 72 76 4293 * 1000 1000 * * 3440 1000 0 Y 73 * * * 3616 3524 4883 6449 5127 * * * * * * 4697 * 4032 2662 * 1000 73 0 * * * * * * 3406 0 0 E 74 6016 * * 407 * * * * * * 5162 * * 2955 * * * 3770 * * 74 0 * * * * * * 3406 0 0 D 75 6016 * 911 3896 * * * 4201 * 2975 * 3327 * * 5162 4883 4554 * * * 75 0 * * * * * * 3406 0 0 W 76 * * * * 4541 * * 1944 * 4883 * * * * * * * 2738 1122 4211 76 0 * * * * * * 3406 0 0 G 77 3906 * * 5379 4541 4376 6021 * 3155 * * 4201 1987 * 3330 2100 4288 * * * 77 0 * * * * * * 3406 0 0 C 78 * 4850 * * * * * 2356 * 1647 * * 4191 * * * 6001 1395 * * 78 0 * * * * * * 3411 0 0 D 79 6414 * 1663 4123 * 4975 * * 2623 * 4966 3153 * 4658 3570 3189 * * 4534 * 79 0 * * * * * * 3411 0 0 E 80 * 4760 * 546 * * * * 2962 * * * * 5952 4777 * 3934 * * 4981 80 0 * * * * * * 3397 0 0 L 81 * * * * * * * 3867 * 194 4119 * * * * * * * * * 81 58 4664 * 0 * * * 3372 1000 0 I 82 * * * 2755 * * * 1522 3296 2591 3005 * * * * 5311 * 3538 * * 82 0 * * * * * * 3013 0 0 V 83 * * * * 4292 * * 1740 * 3213 4867 * * 4759 * * 5220 1172 * * 83 0 * * * * * * 2486 0 0 D 84 * * 105 3836 * * * * * * * * * * * * * * * * 84 0 * * 0 * * * 2172 0 0 //