HHsearch 1.5 NAME c9w75C_ FAM FILE c9w75C_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9w75C_.a3m DATE Sat Nov 1 10:26:42 2025 LENG 1061 match states, 1061 columns in multiple alignment FILT 21 out of 23 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.6 EVD 0.3207 -9.2323 SEQ >ss_pred CCCCCCEEEEEEEEECCEEEECCCEEECCEEEEECEECCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCEEEEEEEECCCE EEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCEEEEEEEEEEEEC CCCCEEEEEEECCCCCCCCCEEEEEEEECCCEEEEEEECCCEEEEEEECCCCCHHHHEEHHHCCCCCCCEECCCCCEEECCEEEEECCCCCCCCCCCHHC CCCCCCCCCCCCCEEEEEEEEECHHEECCCCCCCCEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEC CCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCEEEEEECCEEEECCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCEEEECCEEEEEECCEEEEEE EEEEEEEEECCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCEECC CCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCEEEECCCEEEEEEEEEEEEECCCEEEEECEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHCCEEEEECHHHHHHHCCCCHHHEEEEEEEECCEEEECCCCCHHHHHHHHHHHHH HHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCEEEEEEEE EEEECCCEEEEECEEEEEECCEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCC >ss_conf 9611323799985421325413412212215640001135663245422344335642110120476511455301407850120562589999807975 9999841331588662443543213554135642113223541464068631122344202651699982253154202233431110211157999707 7111038886314588631114789973041799998347437877642654054421101034578863002553243031589716766654120000 5777665544100243100120021001332556402101432113214557888899823776554212333144321110565445761222011000 1244554202431146765456520024412477503102311135421452155456777753104677531243677425644125488533578999 9832224506268998158845688715787079996067664278960577774024665142235889840567750111025774312555302113 2345023666531155420267675431301455378345205788878998653525996120450884899999999989989999998874445247 7899986300001133313357756200047865556530433110023676074676544078102200000113433763676788898898999999 8750023321012345738878887515011227889987999999999999999988899999999999999855899999999975111246878999 9999986655201345556679999999999999999999999999999989975110101534687689997024988189999975478759999865 5654283555303158987898999540211541576456699953025999733110388 >Consensus xxxxxxxxxyvxxxxxxxxxxxxxxxxxxxxlxxxxxxxxxsxxxxxxxxxxxxxxxxxpxxxgxyxxxxxxxxxxxgxxxgxtfxnxxxsxxxxxxxxx ixxxxcxxxxcxxpxfxxxxpxxxxxxxxxxxxxxxxxxxxxxxxvxxxxxxxxxxxfxxxxgxxxxyxxxxgxxxxxxxxxxxxxxxxxxxxxxxlxxg xxxxxxxxxxxxxxxxxxxxxxxxvxxLxxxtxllxxdxxGxixxxvdCxxxxxxxLkCxxxsfxxxxGfYxxsxxxvxxxxtxvxxpxxxxxxxxxxxx nxxxxxxxxxxxrxxxxncxxxxsxlxxxxxxxxxxcxnvxxxxxxxxcxxsvtxdxfxxxxxxxxxxxxxxxxxlxxxnyxxxxxxxxcxlxxxxxxxx xxxxgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgxyxxxxxxxxxxxxxvxxxxxxxxxxxxxxxxxxsxixxdvCvxYnIYGxtGxGi ixxsnxxxxxgxxxxxdxsGxlxxFknxttgxxyxVxPCxxxxxxvvxxgxxxsxxxaxlxxxixcxxxxxxxttxxxxxtxxgxxxxxxxxxxxxxCxx PxgxgxCxdxxxxxxxxxxxxxxxxxxxvxxxxgxVxIPtnFTlsvtxEyiQtxxxkVsIDCaxYVCngnxrCxxLLxQYgsfCxxIexaLxxxaxledx xxxxmxsxxxxxxxlxxixxfgxfNfsxiLpxxxxxxxRSaIEDLLFdKVvtsglqdYkxCtxgxxiaDLvCAQyYNGImVLPgVvdxexmAmYTasLxG gmaxggxTaaaxxaxxIPFaxavQaRLNylalttdVLxeNQkiiAnsFNxAignIqegFxtvsxALxKIQdVVNxqaxALxxLxxQLsnNFgAISSSIxd IyxRLDxleAdaQVDRLItGRLtALnayVtQxLxxxsevraSrxLAqeKiNECVKSQSxRygFCGNGtHixSlxQaAPnGixFlHxxlvPtxxvxVxaxx GlCvxgxxxxpkxgxfvxxnxxwxiTxRxxYxPrxiTxadxvxixSCxVxyxnvnxtvxxp >c9w75C_ NITYGSHHLYVSSRTRGVYYPDDAFRSSTNVLHEGFFLPFDSNVTWYSFWNQKYSVATSPFGDGVYFSTIDKSNVVRGWVFGTTLDNDTQSVLLYNDGTH VRVEVCTFHFCPTPVFSASSPHLYSSAFNCTLNYTLASVRADFTEVDGSFKTIREFVFKLQDGSLNVYYASTSYVLAIGATSQLPSGVTPLVPLWKIPIG LNITNFKTLVYLRSDNTPLQAAYVVGHLKRRTMMFKYDENGTIVDAIDCALDPLSETKCTLRSFIVEKGIYQTSNFRVQPQDTVVRFPNITNLCPFSEVF NATTFASVYAWNRKRISNCVADYSVLYNSTSFSTFQCYGVSSTKLNDLCFTNVYADSFVVRGDEVRQIAPGQTGVIADYNYKLPDDFTGCVLAWNSRNQD ASTSGNFNYYYRIWRSEKLRPFERDIAHYDYQVGTQFKSSLKNYGFYSSAGDSHQPYRVVVLSFELLNAPATVCGPKQSTELIKNKCVNFNFNGLTGTGV LTDSNKKFQSFQQFGRDVSDFTDSVKDPKTLEVLDITPCSYGGVSVITPGTNASTQVAVLYQDVNCTDWRVYSTGTNMFQTQAGCLIGAEHVNNSYDCDI PIGAGICATYHTNKRIVAYVMSLGAENSVAYSNNTIAIPTNFTISVTTEVMPVSMTKTSVDCTMYICGDSVECSTLLLQYGSFCTQLNRALTGIAVEQDK NTQEVFAQVKQIYKTPDIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADVKQYGDCLGDIQARDLICAQKFNGLTVLPPLLTDEMIAAYTAALIS GTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQESLTSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLND IISRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYIPSQERNFTTAP AICHEGKAHFPREGVFVSNGTHWFITQRNFYEPQIITTDNTFVSGTCDVVIGIVNNTVYDP >UniRef50_A3EXD0(235-1222:1352) Spike protein S2 n=12 Tax=root RepID=SPIKE_BCHK5 E=1e-168 s/c=0.60 id=36% cov=79% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- --------------------AAFYIYKLHPLTYLLNFDVEGYITKAVDCGYDDLAQLQCSYESFEVETGVYSVSSFEASPRGEFIE-QATTQECDFTPML TGTP-PPIYNFKRLVFTNCNYNLTKLLSLFQVSEFSCHQVSPSSLATGCYSSLTVDYFAYSTDMSSYLQPGSAGAIVQFNYKQDFSNPTCRVLATVPQNL TTITKPSNYAY-LTECYKTSAYGKN-YLYNAPGAYTPCLSLASRGFSTkyqshsdgelTTTGYIYPVTGNlqmafIISVQYGTDTNSVCPMQalrNDTSI EDklDVCVEYSLHGITGRGVFHNCTSVGLRNQRFVYDTFDNLVGYHSDNGNY-YCVRPCVSVPVSVIYD--KASNSHATLFGSVACSHVTtmmsqfsrmt ktnlLARTTPGPLQTTVGCAMGFINSSMVVDeCQLPLGQSLCAiPPTTSSRVRRATsgasdvfqiatlnfTSPLTLAPINSTGFVVAVPTNFTFGVTQEF IETTIQKITVDCKQYVCNGFKKCEDLLKEYGQFCSKINQALHGANLRQDESIANLFSSIKTQNTQPlQAGLNGDFNLTMLqIPQvtTGERKYRSTIEDLL FNKVTIADpgyMQGYDECMqqGPQSARDLICAQYVAGYKVLPPLYDPYMEAAYTSSLLGSIAGASWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQ KIIANKFNQALGAMQTGFTTTNLAFNKVQDAVNANAMALSKLAAELSNTFGAISSSISDILARLDTVEQEAQIDRLINGRLTSLNAFVAQQLVRTEAAAR SAQLAQDKVNECVKSQSKRNGFCGTGTHIVSFAINAPNGLYFFHVGYQPTSHVNATAAYGLCNTenpQKCIAPIDGYFVLNQTtstvadsdqQWYYTGSS FFHPEPITEANSKYV-SMDVKFENLTNRLPPP >UniRef50_B3FHU5(203-1047:1226) Spike n=17 Tax=Coronavirinae RepID=B3FHU5_CVTKE E=1e-110 s/c=0.47 id=29% cov=72% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- --------------------------------------------------DTTINKLRCAYQQFNFSTGFYDI--------DTFVPVTSNITYLPYPDLK DNTGQEVCDFYVALKGDHVIYNQSCVDSKYPFFKLKCNNTYSWDNDKLC---ILGSEIYVPGYNVyTNTQHSYAGTIPNY----PT-CSSKGLSLENIYN NIG----FNRFCV----TKLLTTRDISSITQYTC----VYVVSVEGFDSYNQGIVYSYVGVNFDFGTAMYSVKTAPMQ---FIYTEQCHKYNIYNIRGVG QILNVTGKDNTTLVdggLVITSGSGLLAFRNNGSL--FSVQPCRTVSTQAVI----VNGSFVGLFVPASCWLADQFNLGNHTEYVDGGCLISNKTISRKR RSTNAVYTGECTGlfaamgtsciYSNGTVLNRTLPQPSVQTSVQPLLGVVAnvsIPKELTLAVTTEYLQTRYQKVTIDCAKYVCGDSTRCRTLLQQYGSF CQSVNAILSGVNENEDNGLLQYAEAINTGYTLNftgyNVSNLGGFDLSLVLPKnltLAQNQGRSTIEDLLFDKVVTLGVsevdQNYDKCIASrggsfTNL ADLTCAQFYNGVMVLPGVVDPGLMAVYTGSLIGGMALGGITAAAS----IPFATQIQARVNYLALTQSVLLDNQNLIANSFNKALKGIQsaldtvsqgfv evaRGFESVTVALNKVQDVVNTHSDILNKLMAQLSVNFGAVSSSLNEIYLKLDQINADAQVDRLITGRLTALSTYVASLQLAAYKADQSRRLALQKVEEC VKSQSMRYGFCGNGSHVLTIPQSAPNGIFFIHYTYQPTSYVTIEAVPGLCVttpSGKyGVMPKtgSGIIFRQNDTFFVTSTQLYEPKLLSYSEVVNLTSC EANYYNVSES---- >UniRef50_Q8BB25(42-1212:1349) Spike protein S2 n=85 Tax=Betacoronavirus RepID=SPIKE_CVP67 E=0 s/c=0.83 id=33% cov=95% DVTNGLGTFYVLDRVYlnttlllNGYYPISGATFRNMALKGTRLL----STLWFKP------PFLSPFNDGIFAKVKNSRFSKDGVIysefpaitIGSTF VNTSYSIVVEPHTSLIngnlqgllQISVCQYTMCEYPH-TICHPNLGNQRIE-LWHYDTDVVsclyrRNFTYDVNADY---LYFHFYQEGGTFYAYFTDT GFVTKF---------------LFKLYLGTVLSHY--YVMPLTCNSALSLEYWVTPLTTRQFLLAFDQDGVLYHAVDCASDFMSEIMCKTSSITPPTGVYE LNGYTVQPVATVYRRIPDLPNCDIEAWLNSKTVSSPLNWERKIFSNCNFNMGRLMSFIQADSFGCNNIDASRLYGMCFGSITIDKFAIPNSRKVDLQVGK SGYLQSFNYKIDTAVSSCQLyyslpaanvsvthynpsSWNRRygfnNQSFGSRGLHDAVYSqqcfntpntycpcrtsqciggagtgtcpvgttvrkcfaa VTKATKCTCWcQPDPSTYkgvnawtcpQSKVSIQPGQHCPGLGLVEDDCsgnpctckpqafigwsseTCLQNGRCNIFANFILNdvNSGTTCStdlQQGN TIITTDVCVNYDLYGITGQGILIEVNATyYNSWQNLLYDSSGNLYGFRDYLSNRTFLIRSCYSGRVSAVFHAN--SSEPALMFRNLKCSH--VFNNTilr qiqlVNYFDSYLGCVVNAYNNTASAvsTCDLTVGSGYCVDYVTALRSRRSFTTgyrftnfepfaaNLVNDSIEPVGGlyEIQIPSEFTIGNLEEFIQTRS PKVTIDCATFVCGDYAACRQQLAEYGSFCENINAILTEVNELLDTTQLQVANSLMNGVTLSTkIKDGINFnvddiNFSPVLgclgSECNRASTRSAIEDL LFDKVKLSDvgfVQAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSENQISGYTLAATAASLFPPWTAAAG----VPFYLNVQYRINGLGVTMDVLSQNQK LIASAFNNALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQEILSRLDALEAKAQIDRLINGRLTALNAYVSQQLSDSTLVKFS AAQAIEKVNECVKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDiGISPKSGYFINVNNSWMFTGSSYYYPEPITQNNV VVMSTCAVNYT--------- >UniRef50_B2BW33(451-1325:1472) Spike protein n=1 Tax=Beluga Whale coronavirus SW1 RepID=B2BW33_9GAMC E=0 s/c=0.88 id=27% cov=73% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- --------------------PQTFISTLNYTTALVTFD-KGNVRSVIDCnSEKPFDRLRCDLQTDVVSDGFYPVNIKTneAKENTTFIDVPATLANLTLE VFVSSPEQSPACVIKSYKCVDTRYFYISDYSYSCAE-----NGIPNDAAGAAYCRGVLDQINNYGVRGMDFKGKCPFAGSKVNSGLTFDKIcfgvyeqgc qsdkACRFGFYFDNVQFSQYGNKLYYKP-----------QDLGFIDYQFGTLFKNSLV------------------------------------QSNIIQ EGCHDYDIYGYKGTGVVKPFSdySYLQTGGLIMLDSGGFPSLFRYNFAL--YEVTQCTREVAQLAVASNNAIGYYLPKQVTIDGVNASTSCNTTGAFkyc YYDDVIHVGRDVSNVTINVCNPslmMENSHCINIQGNFMVNEPAITFNSTQYQPLlgVSGDVQLPRTLMLHTTTEFIQTHSPKIVIDCTKYVCGSSERCR RILVKYGGFCESIMRLLNGVNMADDVSVTDFLDNFNSfdnisvslQNLNASFGQFEGYGFQKFLPKSFDFDGsdprdaRSTIEDILFDKVTTVGLGtvda DYDKCTKGLSVADLVCAQYYNGIMVLPGVADAEKMAMYTGALVGGMVLGGITSAAA----IPFATQIQARVNYLALTQNAIQENQKIIVQQFNKAIDSMT safqsvnEGFSAVSSAITEVQNAVNAQSQALTKLLGQLNYNFGATTSSIKELYERLAKLEADVQVDRLINGRLTALSAFVAARQVEAAKVASQRVLAAEK INECVKSTSNRYGFCGNGAHIISFPQNAPNGMLFVHFSLVPNETITVKGIIGLCLNNSIGivpAKDRGMFIQCSNGTYcpefensfneskngnvtfpfaI TSREQYNPRQITTGDIQMLTSCNSGYTHIEWS---- >UniRef50_P05135(208-1019:1163) Spike protein S2 n=1237 Tax=Avian coronavirus RepID=SPIKE_IBV6 E=0 s/c=0.91 id=29% cov=73% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ----------------------------------LAYFVNGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTNSSlVKEKFIVYRESSVNT------- ---------------TLELTNFTFSNVSNATPNTG----GVQTIQLYQ----TITAQS---------GYYNLNFSFLSSFIYKASDYMYGSYHPSCKFRL ETINNGLWFNSLSVSLGYGPIQGGCKQSVFANRATCCYAYSYNGpslcKGVYRGELTKSFECGLLVFVTKTdgsriqTRNEPFTLTQHNYNNITLDRCVE YNIYGRVGQGFITNVTnyainyNYLADGGMAILDTSGAIDIFvvQGEYGLNYYKVNPCEDVNQQFVVSGGKlvgilTSRNETGSQPLENQFYIKIINGTR RSRRSITGNVTNCPYVTYGKFCIKPDGS---ISTIVPKELEHFVAPLL------NVTENVLIPDSFNLTVTDEYIQTRMDKVQINCLQYVCGNSLECRKL FQQYGPVCDNILSVVNSVGQKEDMELLYFYSSTKPSgFNTPVLSNVstGEFNISLLLTPPSSASGRSFIEDLLFTSVESVGLptdDAYKKCTAGPLgfLK DLACAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGGITSA----GAIPFATQLQARINHLGITQSLLFKNQEKIAASFNKAIGHMQEGFRSTSLALQQ IQDVVNKQSSILTETMASLNKNFGAISSVLQDIYQQLDSIQADAQVDRIITGRLSSLSVLASAKQAEYYRVSQQRELATQKINECVKSQSIRYSFCGNGR HVLTIPQNAPNGIVFIHFTYTPESFVNVTAIVGFCVNPanasqYAIVPAngRGIFIQVNGSYYITARDMYMPRDITAGDIVTLTSCQANYVSVNKTVI-- >UniRef50_A3EXG6(29-1139:1274) Spike protein S2 n=4 Tax=Rousettus bat coronavirus HKU9 RepID=SPIKE_BCHK9 E=0 s/c=0.90 id=33% cov=96% ----------IKAKVSNVLLPDPYIAYSGQTLRQNLFMADMSNTILYPVTPPAnganggfiYNTSIIPVSAGLFVNTWMYRQPASsraycqepfGVAFGD TFENDRIAILIMapdnlgswsavapRNQTNIYLLVCsNATLCINPGFNRWGPAGSFIAPDALVDHSNSCFVNNTFSVNISTSRI-SLAFLFKDGDLLIYH --SGWLPTSNFEHGFSRGSHPMTYFMSLPVGGNLPRAQFFQSIVRSNaidkgdgmcTNFDVNLHVAHLINRDLLVSYFNNGSVANAADCADSAAEELYCV TGSFDPPTGVYPLSRYRAQVAG-FVRVTQRGSYCTPPYSV-LQDPPQPVVWRRYMLYDCVFDFTVVVDSLPTHQLQCYGVSPRRLASMCYGSVTLDVMRI NETHLNNLFNRVPDTFSLYNYALPDNFYGCLHAF---------YLNSTAPYAVANRFPIKPGGR-------QSNSAFIDTVINAAHYSPFS---YVYGLA VITLKPAAGSKLVCPVANDTVVITDRCVQYNLYGYTGTGVLsKNTSLVIPDGKVFTASSTGTIIGVSINST--TYSIMPCVTVPVSV---GYHPNFERAL LFNGLSCSQrsravtepvsvlWSASATAQDAFDTPSGCVVNVELRNTTIvnTCAMPIGNSLC--FINGSIATANADSLPRLQLVnydPLYDNStatpmtp vywVKVPTNFTLSATEEYIQTTAPKITIDCARYLCGDSSRCLNVLLHYGTFCNDINKALSRVSTILDSALLSLVKelSINTRDEVTTFSFDGDYNFTGLM gclgPNCGATTYRSAFSDLLYDKVRITDpgfMQSYQKCIDsqwGGSIRDLLCTQTYNGIAVLPPIVSPAMQALYTSLLVGAVASSGYTFGITSAGVIPFA TQLQFRLNGIGVTTQVLVENQKLIASSFNNALVNIQKGFTETSIALSKMQDVINQHAAQLHTLVVQLGNSFGAISSSINEIFSRLEGLAANAEVDRLING RMMVLNTYVTQLLIQASEAKAQNALAAQKISECVKAQSLRNDFCGNGTHVLSIPQLAPNGVLFIHYAYTPTEYAFVQTSAGLCHNGTGYAPRQGMFVlpN NTNMWHFTTMQFYNPVNISASNTQVLTSCSVNYTSVNYTVLEP >UniRef50_B1PHK2(251-1227:1375) Spike protein n=2 Tax=Alphacoronavirus RepID=B1PHK2_9ALPC E=0 s/c=0.89 id=28% cov=84% ----------------------------------------------------------------VYFNGTAPNKQCNGYATDSAFEALRFSL-------- --------NFTDERVFAGSGSVVLLVSG---LQYKFSCTNNSEAVIDSGIP------FGNVVEPFYCFVSINGTSIFVGMLPAVLREIV-ITRYGSIYLN G----FSIFQGPPIQGVLFNVtnrgatDLWTVALSNFTEVLAEVQSTAIKALLYCDD-PLSQLKCQQLQFSLPDGFYATaSLFQHELPRTFVTLPRHFTH ----SWINLR-----IKWKNGVCYNCP-PASSWIDFVTFNSNGTENVLPER--TLC---VNTTQFTTNLTLIEEAF--------SYSTPVVVRADDCPFD FQSLNNYLT-----------------------FGSICFSLNGTIGKGCT-LGIYKRASSQYIPIWNVWVAYtsgdNILGVREPNVGVRDQSVVHQNVCTS YTIFGHSGRGIIRPANISYIAGVYYTA-ASGQLLGFKNTTTGEVFSVTPC-------------NPSQQAVVVKDRLVGVMSSTSTVSIPFNNTIPTPSFY YHSNATSSCDDPsvvySSIGICDDGGITFVNSTRVRGEPDP---AISMGNISVPSNFTVSIQVEYLQMSIRPVSIDCAMYVCNGNPHCTRLLQQYISACR TIEEALQLSARLESFEVNSMLTVSETALDLVNISTFgGDYNLTALLPQGG--GKRSVIEDILFDKVVTSGLgtvdEDYKRCTNGIGIADVPCAQYYNGIM VLPGVVDEEKMSIYTASLLGGMTMGGFTPVAA----LPFALSVQSRLNYVALQTDVLQKNQQILANAFNSAIGNITVAFDqvttavqqtsdaikTVASAL NKVQSVVNSQGQALHQLTKQLASNFQAISASIEDIYNRLDGLAADANVDRLITGRLAALNAFVTQTLTKYTEVRASRLLAQEKINECVKSQSTRYGFCGN GTHLFSIPNAAPEGIMLFHTVLVPTEYVSVTAWSGYCHNGVGYAVKDVgnSLFQFNNTFYITPRNMYQPRTPTSADFIRISGCNVVYVNITD----- >UniRef50_A8JP00(19-996:1128) Spike glycoprotein n=3 Tax=Rhinolophus bat coronavirus HKU2 RepID=A8JP00_9ALPC E=0 s/c=0.85 id=28% cov=88% ---------YVDFRLFNGIFSTSRGLSNTTTVITGAY-PSTNKAKWFCPTN--VGRPVgTGVGIGVYAQTAQASYETGGSgAGGYTFSvspkhvtNLTWS LWVHRpwgANANVTVRLCrwwqKFSFNETAHFQPAGP---SSAFECL--------------VNGSFPSSQH----------------KGYMFGVTWYNDF VRIIFPPT-VFELQVDGLQWEYVQFTGPVNAGRMTKFN-VVTEI--SSVLVLTDQSGAVTRYSYCADGFVNGLQCKLRLFDIPPGVY--SNSEVEYPVAL YTVVHNMSVCPQRP--ESYCGSNYCPFKRVVFSNCVVNYTSWTSGLLRD---------------------YQHLVLPNGKFNPFTECNG-----LNRIVD DCVTGFVL-------------------RVGRGTAV---NRTVITPYLKPNECFGWSWNDY------QDSIYDWWIA----DFVSTGAFVCEKNPDAP-RT GVCITYTIEKVTFQGVLYESNFTFAQYYNVLYFGSQLKY-VRIL--GKVYEVAPCFEASYDVLF---RSSSSFGLLYRSFDCNQLRISASrfaerllpSH NGTATALGCLFNATYapNDTMVNCTNPLGDGFCADLLSNVVVRRMTFEKHDTTYVAPVTIErfTELPLDHQLVLTEQFLQTTMPKFSISCETYICDVSKA CKNLLFRYGGFCQKIEADIRGAGVLLDSDVSGLYSTIaaKTSSIMPTTDRFnvSQFFLPKVQSTSERFESRSVIEDLLFSKIETTGPGFYGdyyNCKKN- AIQDLTCAQYHNGILVIPPVMDAETLGMY-----GGIAAASLTLGIfgGQAGITTWSLAMAGRLNALGVVQNALVDDVNKLANGFNQLTASVSKLALTTS SALQAIQAVVNQNAAQVESLVSGITENFGAISTNFKVISQRLDKLEADVQMDRLINGRMNVLQLFVTNYKLKIAELRNTHRYVQSLINECVYAQSLRNGF CGQGLHVLSLMQNAPSGIMFFHYSLIPNNTIIVKTTPGLCESDelgsKCIVAKDGVLVSANlSYWQWSPRNLYKPENLTFAN-VIAVSRGANYTTLNRTF DIP >UniRef50_B6VDW0(232-1010:1165) Spike glycoprotein n=3 Tax=Avian coronavirus RepID=B6VDW0_9GAMC E=0 s/c=1.06 id=29% cov=69% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------NTTITNVTYCDRSTLDMLACQISKHYVDDGFYS------DPQKTSLALPRTIVTLP----- -------------KVAELEMVNLTINARYSAGEASATININGNDT----------------------FCVTKPYFHINAKYTCSDCVLNLRTDTCSFDIN AINNGMSF------------------SQFCLSTKSGSCSITLVATKYWNYQIAQKLYVTAIEGQTSTGTTATSAQAIDSSNIVTDVCTDYTIYGVSGTGI ITHSDLELHNGIAFT-SPTGELFAFKNTTSGKSFQVTPCDSPAQLVVVSNTIVG---AITSNNI--------SSTGKFTRTIAASTFYYSTNATNLTCTE PVLSygpvSVCSDG---AIAETSFLQDSRPSIVSLYDGEVEVPSAFTLSVQTEYLQVQSEQVVVDCARYVCNGNARCTRLLSQYTSACSNIESALHSSAQ LDSREITNMFQTSSQSLTLANISNFqSDYNFTNIIT--SKSGGRSAIEDLLFNKVVTNGLgtvdQDYKACSKDLAIADLVCTQYYNGIMVLPGVVDAQKM AMYTASLTGAMVFGGMTAAAA----IPFSTAVQARLNYVALQTNVLQENQKILAESFNSAVGNIslalsavndaikqtSESLLTVATAINKIQTVVNSQG EALSHLTAQLSNNFQAISTSIQDIYNRLDEVQADQQVDRLITGRLAALNAYVTQLLNQMSQIRQSRLLAQQKINECVKSQSSRYGFCGNGTHLFSLTQSA PNGIFFMHAVLVPQQFTRVNASAGICVDAIKGYSLQPQLIlyQYNNSWRVTPRNMYEPRVPRAADFIPLVDCSVTYYNV------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * 1056 * * * * * * * * 946 * * * * * * * * 1 0 * * * * * * 1566 0 0 I 2 * * * * * * * 946 * * * * * * * * * 1056 * * 2 0 * * * * * * 1566 0 0 T 3 * * * * * * * * * * * * * * * * 0 * * * 3 0 * * * * * * 1566 0 0 Y 4 * * * * * * * * * * * 1056 * * * * * * * 946 4 0 * * * * * * 1566 0 0 G 5 * * * * * 0 * * * * * * * * * * * * * * 5 0 * * * * * * 1566 0 0 S 6 * * * * * * * * * 1056 * * * * * 946 * * * * 6 0 * * * * * * 1566 0 0 H 7 * * * * * 1056 946 * * * * * * * * * * * * * 7 0 * * * * * * 1566 0 0 H 8 * * * * * * 946 * * * * * * * * * 1056 * * * 8 0 * * * * * * 1566 0 0 L 9 * * * * 1056 * * * * 946 * * * * * * * * * * 9 0 * * * * * * 1566 0 0 Y 10 * * * * * * * * * * * * * * * * * * * 0 10 0 * * * * * * 2006 0 0 V 11 * * * * * * * 1993 * * * * * * * * * 417 * * 11 0 * * * * * * 2364 0 0 S 12 * * 2214 * * * * * 2181 2183 * * * * * 2544 2536 * * * 12 0 * * * * * * 2454 0 0 S 13 2379 * 2664 * 2375 * * * * * * * * * * 1129 * * * * 13 0 * * * * * * 2603 0 0 R 14 * * * 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