HHsearch 1.5 NAME c9uhtC_ FAM FILE c9uhtC_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9uhtC_.a3m DATE Sat Jun 14 10:18:36 2025 LENG 78 match states, 78 columns in multiple alignment FILT 8 out of 10 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.3 EVD 0.4311 0.1742 SEQ >ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC >ss_conf 952042467999999998720232039999999997765521799999999999999998465557899999998469 >Consensus SklTDvKCtxVVLlxxLxxlxvesnSkxwaxcVxLHNxIlaxxDxxxaxexlxxllxxllsxxxaxdlxelxdxxlxx >c9uhtC_ SKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDN >UniRef50_P0C6T5(3937-4014:4481) Non-structural protein 11 n=12 Tax=Betacoronavirus RepID=R1A_BCHK5 E=2e-19 s/c=1.24 id=57% cov=101% SKLTDLKCTSVVLLSVLQQLHLEANSKAWAHCVKLHNDILAATDPTEAFDNFVCLFATLMSFSANVDLEALASDLLDH >UniRef50_P0C6T6(3700-3777:4248) Non-structural protein 11 n=5 Tax=Rousettus bat coronavirus HKU9 RepID=R1A_BCHK9 E=2e-19 s/c=1.24 id=68% cov=101% SNMTDLKCTSVVLLSVLQQLRVESSSKLWALCVKLHNEILASNSPTEAFEAFVSLLSVLLSLPGAINLDELCSSILEN >UniRef50_B2BW31(3366-3441:6663) ORF 1ab polyprotein n=2 Tax=Beluga Whale coronavirus SW1 RepID=B2BW31_9GAMC E=1e-12 s/c=0.98 id=44% cov=99% SKLTDVKCATVVLMQLLTKLNVEANSRLHKHLVQTHNDILAESDPAICIEKLTGMLMTLLSIDSTLDVKALCDELL-- >UniRef50_P0C6F6(3591-3668:4128) Non-structural protein 11 n=99 Tax=root RepID=R1A_BC512 E=5e-07 s/c=0.71 id=38% cov=101% SKLTDLKCTNVVLLGCLSNMNIAANSREWAYCVDLHNKINLCNDAEAAQEMLLALLAFFLSKNSAFGVDELLDSYFND >UniRef50_P0C6V2(3475-3552:4017) Non-structural protein 11 n=157 Tax=root RepID=R1A_CVPPU E=4e-26 s/c=1.53 id=42% cov=101% SKLTEMKCTNVVLLGLLSKMHVESNSKEWNYCVGLHNEINLCDDPEIVLEKLLALIAFFLSKHNTCDLSELIESYFEN >UniRef50_P0C6V5(3382-3457:3953) Non-structural protein 11 n=486 Tax=root RepID=R1A_IBVM E=3e-24 s/c=1.47 id=40% cov=99% SKLSDVKCTTVVLMQLLTKLNVEANSKMHAYLVELHNKILASDDVGECMDNLLGMLITLFCIDSTIDLGEYCDDIL-- >UniRef50_P0C6V1(3928-4011:4474) Non-structural protein 11 n=374 Tax=root RepID=R1A_CVMJH E=6e-21 s/c=1.20 id=45% cov=99% SRLTDVKCANVVLLNCLQHLHIASNSKLWQYCSTLHNEILATSDLSVAFDKLAQLLVVLFANPAAVDskclasIEEVSDDYV-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 2332 0 0 K 2 * * * * * * * * 425 * * 3123 * * 2834 * * * * * 2 0 * * * * * * 2332 0 0 M 3 * * * * * * * * * 379 2114 * * * * * * * * * 3 0 * * * * * * 2332 0 0 S 4 * * * * * * * * * * * * * * * 2051 399 * * * 4 0 * * * * * * 2332 0 0 D 5 * * 202 2938 * * * * * * * * * * * * * * * * 5 0 * * * * * * 2332 0 0 V 6 * * * * * * * * * 1477 2938 * * * * * * 971 * * 6 0 * * * * * * 2332 0 0 K 7 * * * * * * * * 0 * * * * * * * * * * * 7 0 * * * * * * 2332 0 0 C 8 * 0 * * * * * * * * * * * * * * * * * * 8 0 * * * * * * 2332 0 0 T 9 1895 * * * * * * * * * * * * * * * 452 * * * 9 0 * * * * * * 2332 0 0 S 10 * * * * * * * * * * * 1328 * * * 1523 1979 * * * 10 0 * * * * * * 2332 0 0 V 11 * * * * * * * * * * * * * * * * * 0 * * 11 0 * * * * * * 2332 0 0 V 12 * * * * * * * * * * * * * * * * * 0 * * 12 0 * * * * * * 2332 0 0 L 13 * * * * * * * * * 0 * * * * * * * * * * 13 0 * * * * * * 2332 0 0 L 14 * * * * * * * * * 422 1979 * * * * * * * * * 14 0 * * * * * * 2332 0 0 S 15 * * * * * 1954 * * * * * 2834 * 1979 * 1523 * * * * 15 0 * * * * * * 2332 0 0 V 16 * 1900 * * * * * * * 1380 * * * * * * * 1523 * * 16 0 * * * * * * 2332 0 0 L 17 * * * * * * * * * 0 * * * * * * * * * * 17 0 * * * * * * 2332 0 0 Q 18 * * * * * * * * * * * * * 1035 * 1954 1979 * * * 18 0 * * * * * * 2332 0 0 Q 19 * * * * * * 2834 * 1380 * * 2970 * 1523 * * * * * * 19 0 * * * * * * 2332 0 0 L 20 * * * * * * * * * 431 1954 * * * * * * * * * 20 0 * * * * * * 2332 0 0 R 21 * * * * * * 1367 * * * * 1391 * * 2114 * * * * * 21 0 * * * * * * 2332 0 0 V 22 * * * * * * * 1900 * 3097 * * * * * * * 701 * * 22 0 * * * * * * 2332 0 0 E 23 1900 * * 450 * * * * * * * * * * * * * * * * 23 0 * * * * * * 2332 0 0 S 24 1005 * * * * * * * * * * * * * * 995 * * * * 24 0 * * * * * * 2332 0 0 S 25 * * * * * * * * * * * 379 * * * 2114 * * * * 25 0 * * * * * * 2332 0 0 S 26 * * * * * * * * * * * * * * * 0 * * * * 26 0 * * * * * * 2332 0 0 K 27 * * * * * * * * 427 * * * * * 1965 * * * * * 27 0 * * * * * * 2332 0 0 L 28 3097 * * 1954 * * * * * 1000 2999 * * * * * * * * * 28 0 * * * * * * 2332 0 0 W 29 * * * * * * 1979 * * * * * * * * * * * 422 * 29 0 * * * * * * 2332 0 0 A 30 735 * * * * * * * 2959 * * 2938 * 2834 * * * * * * 30 0 * * * * * * 2332 0 0 Q 31 * * * * * * 2026 * * 3123 * * * 3104 * * * * * 934 31 0 * * * * * * 2332 0 0 C 32 * 422 * * * * * * * 1979 * * * * * * * * * * 32 0 * * * * * * 2332 0 0 V 33 * * * * * * * * * * * * * * * 2834 * 218 * * 33 0 * * * * * * 2332 0 0 Q 34 * * 2970 2999 * 2938 * * 2110 * * * * 2030 * * 2834 * * * 34 0 * * * * * * 2332 0 0 L 35 * * * * * * * * * 199 * * * * * * 2959 * * * 35 0 * * * * * * 2332 0 0 H 36 * * * * * * 0 * * * * * * * * * * * * * 36 0 * * * * * * 2332 0 0 N 37 * * * * * * * * * * * 0 * * * * * * * * 37 0 * * * * * * 2332 0 0 D 38 * * 1467 1375 * * * * 1984 * * * * * * * * * * * 38 0 * * * * * * 2332 0 0 I 39 * * * * * * * 0 * * * * * * * * * * * * 39 0 * * * * * * 2332 0 0 L 40 * * * * * * * * * 431 * 1954 * * * * * * * * 40 0 * * * * * * 2332 0 0 L 41 677 * * * * * * * * 1417 * * * * * * * * * * 41 0 * * * * * * 2332 0 0 A 42 2101 1954 * 2959 * * * * * * * * * * * 2060 2834 * * * 42 0 * * * * * * 2332 0 0 K 43 * * 1968 * * * * * 3104 * * 2045 * * * 1895 3097 * * * 43 0 * * * * * * 2332 0 0 D 44 * * 176 * * * * * * * * * * * * 3123 * * * * 44 0 * * * * * * 2332 0 0 T 45 2970 * * * * * * * * 2834 * * 1027 * * * 3104 2999 * * 45 0 * * * * * * 2332 0 0 T 46 2959 * * 1954 * 2999 * * * * * * * * * 2834 1523 * * * 46 0 * * * * * * 2332 0 0 E 47 2970 * * 1080 * * * 1948 * * * * * * * * * 2834 * * 47 0 * * * * * * 2332 0 0 A 48 700 1979 * * * * * * * * * * * * * * * 2938 * * 48 0 * * * * * * 2332 0 0 F 49 * * * * 1035 * * 2959 * 2938 2999 * * 2970 * * * * * * 49 0 * * * * * * 2332 0 0 E 50 * * 1387 695 * * * * * * * * * * * * * * * * 50 0 * * * * * * 2332 0 0 K 51 3123 * * * * * * * 956 * 2970 2047 * * * * * * * * 51 0 * * * * * * 2332 0 0 M 52 * * * * 2110 * * * * 617 3104 * * * * * * * * * 52 0 * * * * * * 2332 0 0 V 53 2834 * * * * * * * * 1384 * * * * * * 2959 1523 * * 53 0 * * * * * * 2332 0 0 S 54 1954 3097 * * * 1979 * * * * * * * 2834 * 2114 * * * * 54 0 * * * * * * 2332 0 0 L 55 * * * * * * * * * 422 1979 * * * * * * * * * 55 0 * * * * * * 2332 0 0 L 56 * * * * 3097 * * 2938 * 410 * * * * * * * * * * 56 0 * * * * * * 2332 0 0 S 57 1415 * * * * * * 2999 * * 2959 * * * * 2114 * 2834 * * 57 0 * * * * * * 2332 0 0 V 58 * * * * 1954 * * * * * * * * * * * 1432 1429 * * 58 0 * * * * * * 2332 0 0 L 59 * * * * 1954 * * * * 431 * * * * * * * * * * 59 0 * * * * * * 2332 0 0 L 60 * * * * 1914 * * * * 695 3097 * * * * * * * * * 60 0 * * * * * * 2332 0 0 S 61 2834 2999 * * * * * * * * * * * * * 445 * * * * 61 0 * * * * * * 2332 0 0 M 62 * * * * 3097 * * 1979 1954 3123 3104 2834 * * * * * * * * 62 0 * * * * * * 2332 0 0 Q 63 * * 1979 * * * 2938 * * * * 2970 1971 3104 * 3097 * * * * 63 0 * * * * * * 2332 0 0 G 64 1959 * * * * 2114 * * * * * 2938 * * * 1391 * * * * 64 0 * * * * * * 2332 0 0 A 65 1003 * * * * * * * * * * 3097 * * * * 1380 * * * 65 0 * * * * * * 2332 0 0 V 66 * 2938 * * 2970 * * 2060 * 2959 * * * * * * * 1421 * * 66 0 * * * * * * 2332 0 0 D 67 * * 400 * * 2970 * * * * * 3123 * * * * * * * * 67 218 2834 * 2585 263 * * 2332 1000 0 I 68 * * * * * * * 1963 * 1037 * * * * * * * 1965 * * 68 0 * * * * * * 2332 0 0 N 69 * * 2045 1959 * 2999 * * 2959 * * 3104 * * * 2938 * * * * 69 0 * * * * * * 2332 0 0 K 70 2026 * * 648 * * * * 3104 * * * * * * * * * * * 70 0 * * * * * * 2332 0 0 L 71 * * * * * * * * * 445 * * * * * * * 2834 * 2999 71 0 * * * * * * 2332 0 0 C 72 3097 1045 * * * * * 2938 * 2970 * * * * * 2834 * * * * 72 0 * * * * * * 2332 0 0 E 73 * * 939 2019 * * * * * * * * * * * 2110 * * * * 73 0 * * * * * * 2332 0 0 E 74 * * 1387 2030 * * * * * * * * * * * 1423 * * * * 74 0 * * * * * * 2332 0 0 M 75 * * * * * * * 2060 * 2026 3104 * * * * * * * * 1328 75 0 * * * * * * 2332 0 0 L 76 * * * * 1954 * * * * 733 * * * * * * * 2834 * * 76 0 * * * * * * 2332 0 0 D 77 * * 1351 1357 * * * * * * * 2201 * * * * * * * * 77 0 * * * * * * 1958 0 0 N 78 * * 2201 * * * 2300 * * * * 787 * * * * * * * * 78 0 * * 0 * * * 1958 0 0 //