HHsearch 1.5 NAME c9ue3A_ FAM FILE c9ue3A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9ue3A_.a3m DATE Sat Jan 31 14:54:43 2026 LENG 1094 match states, 1094 columns in multiple alignment FILT 23 out of 25 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.6 EVD 0.3200 -9.6718 SEQ >ss_pred CHHHHHHHHHHHCCCCEEEECEEEEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEEEEEEEEECCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCC CCCCCEEEEEECCCEEEEEEEEEECCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEECCHHHCCCCCEEEEEEECCCCEEEEEEE CCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCEEEEEEEEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEECEEEEEEEECCEEEEEE ECCCCHHHEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEEEEEEEEEC CCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCCEEEEEEEEEECCEEECCCCCCCCCCCCCCEEE CCEEEEEECCEEEEEEEEEEEEEEEEEEEEECCCCEEEEEEEECCCEEEEEECCCCCCCEEEECCCCEEEEEECCCCCCCCCCEEEECEEEEEEECCCCC EEECCEEEECEEEECCCCEECCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEEEEECCCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH HHCCCCHHHEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHEEHHHHHHCCCCCCHHEEEEEEEECCEE EECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE EEEEECCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEEEEC >ss_conf 9267777511100366168020556689850687310478621676510589887753479998304787641121672112554211244216873689 9752206998468506766997507668998630122334440364068877787643255511489986302233206675279999636884999997 4787436667655505899971674047754278750479999842499951200374751379999651344645899986230599997177477777 3488275504201045688970345666333451379767654554452169951266554542344456506765057603689843389999986320 3223444345665552421102478875434432467400235540365457608789885101564034899999724313111023013567663011 3114588610678999972000163107774178515789851265289993267763279956740123210234435652114502068975224432 0000036501025115630022222355403346430278335205778778998544625996120440883799999999989989899986541111 1000101100003320133201347764322234555445643444312027777777543313553430020104466214762012000011244247 6267678889888899999987424310122220188889875140112278889889999999999999898876542233334445566799999999 9999755899999999975011246778999999875444410135555557899999999999999999999999999999997612110153468758 9997024998189999976478759999865677428611577305863799942987999431212640676444599820047998665329 >Consensus xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxwxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxcxxxxxcxgxxxxvfxxxxggxipx xfxfnnwflltnxstxvxgxxxxxqpxxxxcxxxvxxxxxxxxxxxfxxxxxxxCngxsxxxxxxxxrxxxnxxxxxxxxxxxxvfxxxtxxxxxxxxxc xxxxxxxxxxxxxxxxycxxxxxxxxxxfxgxlpxxvxexxxxxxgxxyxngxxxxxxxxxxxxxxxxxxxxxxxxxxxaxxxxtxxlvxxxntsIqxvx YCDSplxxLkCqxxsFnlxDGFYsxssxxxxxprtxVxxPxxxxxtxvNxtixxtxxxxxxxxxxxxtxxxxxxxvxxNxxstxCVxTsqfxvxxxyxxx xsxxxnxxxxxxxxsYnxxxxxxxxtCpFslnxiNNyLtFnxlCvSxxpxxxxCxxxvyaxxxxxyqxxxxIYvtxxxGxxitGxpxpvvgvxdxSxIxl dvCvdYNIYGxtGtGVIxxsNssylxGLxyTSxsGdLLxFKNsttGxiYsVtPCdxsxQvvVvxgsiVGaxtsxnxxxxxxxxxixxpxfxyxsxxnxxx nCtpxlxxxxxgicxdgsIxxvxxxxxxxxvxpixtgnitIPtnFtlsvtxEyiQxxxxkvxIDCxxYVCxxxxxCxxLLxqYgsxCxxIxxaLxxxaxl exxexxxxxxxsxxxxxxxxixxfxxxxnxxxxxxxxxxxxgxxxxxlxxxlpxxxxxrxxRSxIEDLLFxKVvdxDYxxCtxgxxiaDLxCaQyyNGim VLPgvvdxxxmamYTasLxgxmxxggxTxaAxaiPFaxxvqxRlNylaltxxVLxeNQkiiAxsFNxAixxIxxxfxxvnxaixqtsexxxTvaxAlxKi QxVVNxqxxaLxxLxxQLxxnFgAISssixdIyxRLDxleAdaQVDRLItGRLxaLnafVtqxlxxxxevrxsrxLAxxKiNECVKSQSxRxgFCGnGtH ixSlxqxAPxGixFxHxxlvPtxxxxvxaxxGlCxxxxxxxxxxxxxxxxlfxxxnxxxxiTxrxxyxPrxxtxxdxvxxxsCxvxxvNxTvxx >c9ue3A_ NLIRDFLFSNFKEEGSNVVGGYYPTEVWYNINTNWFNNVTLLYSRSSTATWEYQGVSNFTYYKLNNTNGLKTYELCEDYEHCTGYATNVFAPTSGGYIPD GFSFNNWFLLTNSSTFVSGRFVTNQPLLINCLWPVPSFGVAAQEFCFEGAQFSQCNGVSLNNTVDVIRFNLNFTADVQSGMGATVFSLNTTGGVILEISC YSDTVSESFGITDGPIYCYVLYNGTALKYLGTLPPSVKEIAISKWGHFYINGYNFFSTFPIGCISFNLTTGVSGAFWTIAYTSYTEALVQVENTAIKNVT YCNSHINNIKCSQLTANLNNGFYPVASSEVGVNKSVVLLPSFFTYTAVNITIDLGMKLSGYGQPIASTLSNITLPMQDNNTDVYCIRSNQFSVYVHSTCK SSLWDNIFNQDCTDVLEATAVIKTGTCPFSFDKLNNYLTFNKFCLSLSPVGANCKFDVAARTRTNEQVVRSLYVIYEEGDNIVGVPSDNSGLHDLSVLHL DSCTDYNIYGRTGVGIIRRTNSTLLSGLYYTSLSGDLLGFKNVSDGVIYSVTPCDVSVQAAVIDGAIVGAMTSINSELLGLTHWTTTPNFYYYSIYNYTV DCEPVITYSNIGVCKNGALVFINVTHSDGDVQPISTGNVTIPTNFTISVQVEYMQVYTTPVSIDCARYVCNGNPRCNKLLTQYVSACQTIEQALAMGARL ENMEVDSMLFVSENALKLASVEAFNSTENLDPIYKEWPSIGGSWLGGLKDILPSHNSKRKYGSAIEDLLFDKVVDEDYKRCTGGYDIADLVCAQYYNGIM VLPGVANADKMTMYTASLAGGITLGALGGGAVAIPFAVAVQARLNYVALQTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSQGLATVAKALAKV QDVVNTQGQALSHLTVQLQNNFQAISSSISDIYNRLDPPSADAQVDRLITGRLTALNAFVSQTLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTH LFSLANAAPNGMIFFHTVLLPTAYETVTAWSGICASDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEGCDVLFVNATVID >UniRef50_B2BW33(430-1319:1472) Spike protein n=1 Tax=Beluga Whale coronavirus SW1 RepID=B2BW33_9GAMC E=1e-138 s/c=0.56 id=35% cov=70% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------ISTLNYTTALVTFDKGNVRSVI DCNSekPFDRLRCDLQTDVVSDGFYPVNikTNEAKENTTFIDVPA----TLANLTLEVFVSSPEQSPACVIK-------------SYKCVDTRYFYISdY SYSCAENGIPNDAAGaaycrgvlDQINNYGVRGMDFKGKCPFAGSKVNSGLTFDKICFGVYEQGcqsdKACRFGFYFDNVQFSQYGNKLYYKPQDLGFId yqFGTLFKNSLVQ--SNIIQEGCHDYDIYGYKGTGVVKPfSDYSYLqtGGLIMLDSGGFPSLFR--YNFALYEVTQCTrEVAQLAVASNNAIGYYLPKQV TIDGVNASTScntTGAFKYCYyddvihvgrdVSNVTINvCNPSLMMENshcINIQGNFMVNEPAITFNSTQYQPLlgVSGDVQLPRTLMLHTTTEFIQTH SPKIVIDCTKYVCGSSERCRRILVKYGGFCESIMRLLNGVNMADDVSVTDFL------------DNFNSFDNISVSLQNLNASFGQFEGyGFQKFLPKSf dfdgSDPRDARSTIEDILFDKVttvglgtVDADYDKCTKGLSVADLVCAQYYNGIMVLPGVADAEKMAMYTGALVGGMVLGGITSAA-AIPFATQIQARV NYLALTQNAIQENQKIIVQQFNKAIDSMTSAFQSVN-------EGFSAVSSAITEVQNAVNAQSQALTKLLGQLNYNFGATTSSIKELYERLAKLEADVQ VDRLINGRLTALSAFVAARQVEAAKVASQRVLAAEKINECVKSTSNRYGFCGNGAHIISFPQNAPNGMLFVHFSLVPNETITVKGIIGLCLNNSIGIVPA KDRGM-FIQCSNGTYcpefensfneskngnvtfpfAITSREQYNPRQITTGDIQMLTSCNSGYTHI---- >UniRef50_Q8BB25(585-1211:1349) Spike protein S2 n=85 Tax=Betacoronavirus RepID=SPIKE_CVP67 E=1e-90 s/c=0.54 id=34% cov=51% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- -----------------------------------------------------------------------------------------------TIITT DVCVNYDLYGITGQGILIEVNATYYNSwqnLLYDS-SGNLYGFRDYLSNRTFLIRSCYSGRVSAVFhaNSSEPALMFRNLKCSHVFNNTilrqIQLVNYF dsylgcvvnaYNNTASAVSTCD--LTVGS-GYCVDyvtalrsrrsfttgyrfTNFEPFAANLVNDSIEPVGGlYEIQIPSEFTIGNLEEFIQTRSPKVTI DCATFVCGDYAACRQQLAEYGSFCENINAILT--------EVNELL--DTTQLQVANSLMNGVTLSTKIKDGINFNVDDINFSPVLGCLGSECNRASTRS AIEDLLFDKVKLSDvgfvqaYNNCTGGAEIRDLICVQSYNGIKVLPPLLSENQISGYTLAATAASLFPPWTAAA-GVPFYLNVQYRINGLGVTMDVLSQN QKLIASAFNNALDAIQEGFDATN--------------SALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQEILSRLDALEAKAQIDRLINGRLTALN AYVSQQLSDSTLVKFSAAQAIEKVNECVKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDIGI----SPKSGYFINVNN SWMFTGSSYYYPEPITQNNVVVMSTCAVNY------- >UniRef50_A8JP00(35-992:1128) Spike glycoprotein n=3 Tax=Rhinolophus bat coronavirus HKU2 RepID=A8JP00_9ALPC E=5e-67 s/c=0.27 id=26% cov=67% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------QSGAVTRYS YCaDGFVNGLQCKLRLFDIPPGVYS--NSEVEYPVALYT-----------VVHNMSVCPQRPESYCGSNYCPFKRVVFSN-----CV------VNYTSWT SGLLRDYQHLVLPNGKFNP-----FTECNGLNRIVDDCVTGFVLRVGRGTAVNRTVITPYLKPNECFGWSWndyqdSIYDWWIADFVSTGA---FVCEKN PDAPRTGVCITYTIEKVTFQGVLYESNFTfaqYYNVLYF----GSQLKYVRIL-GKVYEVAPCfEASYDVLFRSSSSFGllyrsfdcnqlriSASRFAER LLPSHNGTATALgclfNATYAPNDTMVNCTNPL---GDGFCAD-LLSNVVVRRMTFEkhdttyVAPVTIERFTeLPLDHQLVLTEQFLQTTMPKFSISCE TYICDVSKACKNLLFRYGGFCQKIEADIRGAGVLLDSDVSGL--YSTIAAKTSSIMPTTDRFNVSQFFLPKVQSTSERFES--------------RSVIE DLLFSKIETTgpgfygDYYNCKK-NAIQDLTCAQYHNGILVIPPVMDAETLGMYGGIAAASLTLGIFGGQAGITTWSLAMAGRLNALGVVQNALVDDVNK LANGFNQLTASV--------------SKLALTTSSALQAIQAVVNQNAAQVESLVSGITENFGAISTNFKVISQRLDKLEADVQMDRLINGRMNVLQLFV TNYKLKIAELRNTHRYVQSLINECVYAQSLRNGFCGQGLHVLSLMQNAPSGIMFFHYSLIPNNTIIVKTTPGLCESDELGSKCIVAKDGVLVSANLSYWQ WSPRNLYKPENLTFANVIAVSrGANYTTLNRT--- >UniRef50_Q1HVK8(19-319:319) Spike glycoprotein (Fragment) n=8 Tax=Human coronavirus 229E RepID=Q1HVK8_CVH22 E=1e-62 s/c=0.81 id=40% cov=25% ---------------------------------------------------------------------------------CVGHSENVFAVESGGYIPS NFAFNNWFLLTNTSSVVDGVVRSFQPLLLNCLWSVSGSRLTTGFVYFNGTGRGACKGFYSNASSDVIRYNINFEENLRRGT----ILFKTSYGAVV-FYC TNNTLVsgdahIPSGTVLGNFYCFVNTtigNETTSAFVGALPKTVREFVISRTGHFYINGYRYFSLGNVEAVNFNVTNA-ATTVCTVALASYADVLVNVS QTAIANIIYCNSVINRLRCDQLSFDVPDGFYSTSPIQsVELPVSIVSLPVYHKHTFivlyVNFKLRRGPGRCYNC------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ------- >UniRef50_B3FHU5(161-1045:1226) Spike n=17 Tax=Coronavirinae RepID=B3FHU5_CVTKE E=0 s/c=0.83 id=34% cov=75% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ------------------------------------VKSVIFIATGDIFVNGvlMGFYNLNFTQTLTIWLAQCVGTM--KVVILRNSNALVHFSAGNVVA FEPCtgDTTINKLRCAYQQFNFSTGFYDIDTFvPVTSNITYLPYPDLKDNTGqevCDFYVALKGDHVIYNQSCVDSKYPF-FKLKCNNTyswdnDKLCIL GSEIYVpgYNVYTNTQHSYAGTIPNYPTCSSKG----------LSLENIYNNIGFNRFCVTkllttrdiSSITQYTCVYVVSVEGFDSYN--QGIVYSYV GVNFDFGTAMYSVKTAPMQFIYTEQCHKYNIYNIRGVGQILNVtgkdNTTLVdGGLVITSGSG-LLAFRN--NGSLFSVQPCrTVSTQAVIVNGSFVGLF VpascwlADQFNLGNHTEYVDGGCLISNKTISrkrrstnavYTGECTGLFaAMGTSCIYSNGTVLNrtLPQPSVQTSVQPLlgVVANVSIPKELTLAVTT EYLQTRYQKVTIDCAKYVCGDSTRCRTLLQQYGSFCQSVNAILSG---VNENEDNGLLQYAE---------AINTGYTLNFTGYNVSNLGG---FDLSLV LPKNltLAQNQGRSTIEDLLFDKVvtlgvseVDQNYDKCIASRGgsftnLADLTCAQFYNGVMVLPGVVDPGLMAVYTGSLIGGMALGGITAAA-SIPFA TQIQARVNYLALTQSVLLDNQNLIANSFNKALKGIQSALDTVSQGFVEVARGFESVTVALNKVQDVVNTHSDILNKLMAQLSVNFGAVSSSLNEIYLKLD QINADAQVDRLITGRLTALSTYVASLQLAAYKADQSRRLALQKVEECVKSQSMRYGFCGNGSHVLTIPQSAPNGIFFIHYTYQPTSYVTIEAVPGLCVTt pSGKYGVMPKTGSGIIFRQ-NDTFFVTSTQLYEPKLLSYSEVVNLTSCEANYYNVS--- >UniRef50_P05135(167-1019:1163) Spike protein S2 n=1237 Tax=Avian coronavirus RepID=SPIKE_IBV6 E=0 s/c=0.86 id=34% cov=68% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------QDVI LCDgSPTGLLACQYNTGNFSDGFYPFTNSSLVKEKFIV-----YRESSVNTTLELTNFTFSNVSNATPNTGGVQTIQL------YQTITAQSGYYNLNFS FLSSFIYKASDYMYGSYHP-------SCKFRLETINNGLWFNSLSVSLgyGPIQGGCKQSVfanratccYAYSYNGPSLCKGVYrgeltksfecgllvfV TKTDGSRIQTRNEPFtLTQHNYNNITLDRCVEYNIYGRVGQGFITNVtnyaiNYNYLAdggmAILDTSGAIDIFVVQGEYGLNYYKVNPCeDVNQQFVVS GGKLVGILTSRNEtgsQPLENQFYIKIINGTRRSRRSITGNVTncPYVTYGKFCIKPDGSISTIVPKELEHFVAPLlnVTENVLIPDSFNLTVTDEYIQT RMDKVQINCLQYVCGNSLECRKLFQQYGPVCDNILSVVNSVGQKEDMEL--LYFYSST-----KPSGFNT-------PVLSNVSTGEFNISLLLTPPSSA SGR---SFIEDLLFTSVesvglpTDDAYKKCTAGPLgfLKDLACAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGGITS-AGAIPFATQLQARINHLG ITQSLLFKNQEKIAASFNKAIGHMQEGFRSTSLALQQ--------------IQDVVNKQSSILTETMASLNKNFGAISSVLQDIYQQLDSIQADAQVDRI ITGRLSSLSVLASAKQAEYYRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHFTYTPESFVNVTAIVGFCVNpaNASQYAIVPA NGRGIFIQVNGSYYITARDMYMPRDITAGDIVTLTSCQANYvsVNKTVI- >UniRef50_A3EXG6(288-1138:1274) Spike protein S2 n=4 Tax=Rousettus bat coronavirus HKU9 RepID=SPIKE_BCHK9 E=0 s/c=0.84 id=28% cov=70% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------NNGSVANAA DCaDSAAEELYCVTGSFDPPTGVYPLSRYRAQVagfvrvtQRGSYCTPPYSVLQDPPQPVVWRRYMLYDCVFDftvvvdsLPTHQLQCYGVSPRRLASMC YGSVTLDVMRINETHLNNLFNRVP-DTFSLYNYALPDNFYGClhAFYLNSTAPYAVANRFPIKPGGRQSNSAFIDTVINAAHYSPFSYVYGLAVITLKPA AGSKLVCPVANDTVVITDRCVQYNLYGYTGTGVLSKNTSLVIpdGKVFTASSTGTIIGV--SINSTTYSIMPCVTVPVSVGYHPNFERALLFNGLSCSQR SRAVTEPVSVLWSASATAQDafdtpsgCVVNVELRNTTIVNtcampignslcfiNGSIATANadslPRLQLVNYDPLYDNStatpmtpvywVKVPTNFTL SATEEYIQTTAPKITIDCARYLCGDSSRCLNVLLHYGTFCNDINKALsRVSTILDSALLSLVKELSINTRDEVTTFSFDGDYNFT--------------- GLMGCLGPNCGATTYRSAFSDLLYDKVRITDpgfmqsYQKCIDsqwGGSIRDLLCTQTYNGIAVLPPIVSPAMQALYTSLLVGAVASSGYTfgiTSAGVI PFATQLQFRLNGIGVTTQVLVENQKLIASSFNNALVNIQKGFTETS--------------IALSKMQDVINQHAAQLHTLVVQLGNSFGAISSSINEIFS RLEGLAANAEVDRLINGRMMVLNTYVTQLLIQASEAKAQNALAAQKISECVKAQSLRNDFCGNGTHVLSIPQLAPNGVLFIHYAYTPTEYAFVQTSAGLC HNGT--GYAPRQGMFVLPNNTN-MWHFTTMQFYNPVNISASNTQVLTSCSVNYtsVNYTVLE >UniRef50_P59594(246-1121:1255) Spike protein S2 n=151 Tax=Betacoronavirus RepID=SPIKE_CVHSA E=0 s/c=0.80 id=30% cov=68% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---NPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAwerKKISNCVADYSVLYNSTFFSTFkCYGVS--ATKLN DLCFSNVYADSFVVKGDDVrqiapgqtgviadYNYKLPDDFMGCVLAWNTRNidatstgnynykyRYLRHGKLRpferdISNVPFSPdgkpctppalNCY WPLndygfYTTTGIGYQPYRVVVLSFE----LLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQP---FQQFGRDVSDFTDSVrdpkTS EILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTaihadqlTPAWRIYSTGNnvfqtqagcligaehvdtsyecdipiGAGICASYHTVSLLRS TSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVK QMYKTPTLKYFGGF-------------------NFSQILPD-PLKPTKRSFIEDLLFNKVTLADagfmkqYGECLGDINARDLICAQKFNGLTVLPPLLT DDMIAAYTAALVSGTATAGWTfgaGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ--------------ESLTTTSTALGKLQDVV NQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSF PQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYF-----PREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVigIINNTVYD >UniRef50_A3EXD0(332-1216:1352) Spike protein S2 n=12 Tax=root RepID=SPIKE_BCHK5 E=1e-172 s/c=0.69 id=32% cov=69% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---DDLAQLQCSYESFEVETGVYSVSSFEASPRGEFIEQ-ATTQECDFTPMLTGTPPPIYNFKRLVFTNCNYNLTkllslfqvsefschqVSPSSLATGC YSSLTVD-YFAYSTDMSSYLQPGSAGAIVQFNYKQDFSNPTCrvlatvpqnlttitkpsnyayltecyktsAYGKNYLYNAPGAYTPCLSLASRGFSTKY qshsdGELTTTGYIYPVTGNLQMAFIISVQYGTDTNSVCPMQalrNDTSIedKLDVCVEYSLHGITGRGVFHNCTSVGLRNQRFVYDTFDNLVGYHSDNG NYYCVRPC-VSVPVSVIYDKASNSHATLFGSVACSHVTTMMSQFSRMTKTNLLARTTPGPLQTTVG-CAMGfinssmvvdecqlplgqslcAIPPTTSSR VRratsgaSDVFQIATLNFTspltlapinstgfvvaVPTNFTFGVTQEFIETTIQKITVDCKQYVCNGFKKCEDLLKEYGQFCSKINQALHGA------- ---------NLRQDESIANLFSSIKTQNTQPLQAGLNGDFNLTMLQIPQVTTGERKYRSTIEDLLFNKVTIADpgymqgYDECmqQGPQSARDLICAQYV AGYKVLPPLYDPYMEAAYTSSLLGSIAGASWTAGLSsfaAIPFAQSIFYRLNGVGITQQVLSENQKIIANKFNQALGAMQTGFTTTN------------- -LAFNKVQDAVNANAMALSKLAAELSNTFGAISSSISDILARLDTVEQEAQIDRLINGRLTSLNAFVAQQLVRTEAAARSAQLAQDKVNECVKSQSKRNG FCGTGTHIVSFAINAPNGLYFFHVGYQPTSHVNATAAYGLCNTENpqkciapIDGYFVLNQTTSTVADSDQQWYYTGSSFFHPEPITEANS-KYVSMDVK FENLT--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * * * * * * * * * * 0 * * * * * * * * 1 0 * * * * * * 1000 0 0 L 2 * * * * * * * * * 0 * * * * * * * * * * 2 0 * * * * * * 1000 0 0 I 3 * * * * * * * 0 * * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 R 4 * * * * * * * * * * * * * * 0 * * * * * 4 0 * * * * * * 1000 0 0 D 5 * * 0 * * * * * * * * * * * * * * * * * 5 0 * * * * * * 1000 0 0 F 6 * * * * 0 * * * * * * * * * * * * * * * 6 0 * * * * * * 1000 0 0 L 7 * * * * * * * * * 0 * * * * * * * * * * 7 0 * * * * * * 1000 0 0 F 8 * * * * 0 * * * * * * * * * * * * * * * 8 0 * * * * * * 1000 0 0 S 9 * * * * * * * * * * * * * * * 0 * * * * 9 0 * * * * * * 1000 0 0 N 10 * * * * * * * * * * * 0 * * * * * * * * 10 0 * * * * * * 1000 0 0 F 11 * * * * 0 * * * * * * * * * * * * * * * 11 0 * * * * * * 1000 0 0 K 12 * * * * * * * * 0 * * * * * * * * * * * 12 0 * * * * * * 1000 0 0 E 13 * * * 0 * * * * * * * * * * * * * * * * 13 0 * * * * * * 1000 0 0 E 14 * * * 0 * * * * * * * * * * * * * * * * 14 0 * * * * * * 1000 0 0 G 15 * * * * * 0 * * * * * * * * * * * * * * 15 0 * * * * * * 1000 0 0 S 16 * * * * * * * * * * * * * * * 0 * * * * 16 0 * * * * * * 1000 0 0 N 17 * * * * * * * * * * * 0 * * * * * * * * 17 0 * * * * * * 1388 0 0 V 18 * * * * * * * 1048 * * * * * * * * * 954 * * 18 0 * * * * * * 1388 0 0 V 19 * * * * * * * * * * * * * * * * * 954 * 1048 19 0 * * * * * * 1388 0 0 G 20 * * * * * 954 * * * 1048 * * * * * * * * * * 20 0 * * * * * * 1388 0 0 G 21 * * * * * 0 * * * * * * * * * * * * * * 21 0 * * * * * * 1388 0 0 Y 22 * * * * * 1048 * * * * * * * * * * * * * 954 22 0 * * * * * * 1388 0 0 Y 23 * * * * * * * * * * * * * * * * 1048 * * 954 23 0 * * * * * * 1388 0 0 P 24 * * * * * * * 1048 * * * * 954 * * * * * * * 24 0 * * * * * * 1388 0 0 T 25 * * * * * * * * * * * * * * * 1048 954 * * * 25 0 * * * * * * 1388 0 0 E 26 * * * 954 * * * * * * * * * * 1048 * * * * * 26 0 * * * * * * 1388 0 0 V 27 * * * * * * * * * * * * * * * * * 0 * * 27 0 * * * * * * 1388 0 0 W 28 * * * * * * * * * * * * * * * * * * 0 * 28 954 * 1048 * * * * 1388 0 0 Y 29 * * * * 1632 * * * * * * * * * * * * * * 562 29 0 * * * * * 0 1655 0 1000 N 30 * * * * * * * * * * * 1483 * * * * * * * 639 30 0 * * * * 0 * 1655 0 1000 I 31 * * * * * * * 405 * 2031 * * * * * * * * * * 31 0 * * * * * * 1856 0 0 N 32 * * 2002 * * * * * 2031 * * 1924 2046 * * * * * * * 32 0 * * * * * * 1856 0 0 T 33 * * * * * * * * * * * 441 * * * * 1924 * * * 33 0 * * * * * * 1856 0 0 N 34 * * 2031 * * * * * * * * 1924 * * * 2046 2002 * * * 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917 * * * * * 3092 * * * * * * * * * * 1501 * * 166 0 * * * * * * 2521 0 0 I 167 * * * * * * * 1971 * 1230 2201 * * * * * * 3305 * * 167 0 * * * * * * 2521 0 0 R 168 * * * * * * * * * * * * * * 0 * * * * * 168 0 * * * * * * 2521 0 0 F 169 * * * * 648 * * * * 2106 * * * * * * * * * 2946 169 0 * * * * * * 2521 0 0 N 170 * * * * * * * 2106 * * * 838 * * * 2265 * * * * 170 0 * * * * * * 2521 0 0 L 171 * * * * 3305 3092 * 2952 * 616 * * * * * * * * * * 171 0 * * * * * * 2521 0 0 N 172 3092 * 3120 * * * * * * * * 381 * * * * * * * * 172 0 * * * * * * 2521 0 0 F 173 * * 3250 * 559 * * * * 2209 * * * * * * * * * * 173 0 * * * * * * 2521 0 0 T 174 * * * 5372 * * * * * 3092 * 3120 * * * 1659 1228 * * * 174 0 * * * * * * 2521 0 0 A 175 1571 * 2265 2845 * 2244 * * * * * * * * * 3250 * * * * 175 363 * 2169 * * * * 2521 0 0 D 176 * * 2934 1340 * * * * * * * 2104 * * 2050 * * * * * 176 371 2141 * 0 * 987 1013 2979 1386 1439 V 177 * * * * * * * 2214 * 3227 * * * * * 2043 * 1201 * * 177 0 * * * * * 0 3086 0 1000 Q 178 * * * * 1637 * * 2229 * 3298 * * * 3112 3227 2827 * * * * 178 183 3069 * 2000 415 0 * 3086 1000 1000 S 179 2243 * 2274 * * * * * * 3250 * * * * 2878 2114 3187 * * * 179 0 * * * * * * 2521 0 0 G 180 2218 * * * * 2095 * 3305 3160 * * 3243 3092 * * 3120 * * * * 180 0 * * * * * * 2521 0 0 M 181 * * 3187 3250 * 2231 * 3120 * 3243 3137 * * * * 2228 5372 * * * 181 35 * 5372 * * * * 2521 0 0 G 182 * * 3159 * * 1627 * * 3191 * * 2178 * * * * * 2097 * * 182 0 * * * * * 0 2510 0 1000 A 183 3101 * 3063 * * * * 2109 * * * * * 3159 * 1252 * * * * 183 0 * * * * * 0 2510 0 1000 T 184 * * * * * 3191 * 2186 * * 3275 * * * * 3132 2094 3331 * 3063 184 181 * 3087 * * * 0 2510 0 1000 V 185 * * * * * * * 2982 3098 * * * * * * * * 402 * * 185 187 * 3043 * * 927 1076 2393 0 1573 F 186 * * * * 593 * * 2117 * 3232 * * * * * * * * * * 186 0 * * * * * 0 2977 0 1428 S 187 * * * * * * * * * 2157 * * * * 3017 2952 1285 3150 * * 187 0 * * * * 959 1043 2977 0 1428 L 188 * * * * 1610 * * * * 1456 * * * * * 3223 * 2316 * * 188 166 * 3202 * * * 0 3077 0 1000 N 189 * * * 2896 * * 3028 * 2109 * * 2012 * 2686 * 3211 * * * * 189 165 * 3211 * * 995 1005 2947 0 1444 T 190 * * 2943 * * * * * * * * 3093 * * * * 410 * * * 190 410 * 2016 * * * 0 3128 0 1358 T 191 2587 * * * * * * * * 2684 * * * * * 2714 928 * * * 191 244 2684 * 0 * 2077 390 2827 1000 1844 G 192 * * * * * 1814 * * 2668 2859 * * * * * 2660 * * * 1931 192 0 * * * * 578 1599 3015 0 1665 G 193 * * 2263 * * 877 * * * * * 2016 * * * * * * * * 193 0 * * * * * 0 3229 0 1000 V 194 3278 * * * * * * 2940 * 3428 * * * * * 2008 3262 1640 * * 194 0 * * * * 0 * 3229 0 1000 I 195 * * * * * * * 3137 * 2180 * 3250 * 3377 * * 2139 2076 * * 195 0 * * * * * * 2521 0 0 L 196 2244 * * * 3243 * * * * 2192 * * * * * * * 5372 * 1183 196 35 * 5372 * * * * 2521 0 0 E 197 * * 3275 2130 * * * 3087 3331 * * 3132 * * * 3213 * * * 2125 197 0 * * * * 0 * 2510 0 1000 I 198 * 3243 * * 853 * * 2161 * 3092 * * * * * * * * * * 198 0 * * * * * * 2521 0 0 S 199 * * * * * * * * * * * 3092 * * * 896 * 1638 * 5372 199 0 * * * * * * 2521 0 0 C 200 * 161 * * * * * * * * * 3243 * * * * * * * * 200 0 * * * * * * 2521 0 0 Y 201 * * * * * * * * * * * * * * 3305 1175 2106 * * 2161 201 168 3187 * 3585 126 * * 2521 1000 0 S 202 * * 3120 * * * * * * * * 867 * * * 2189 3092 * * * 202 0 * * * * * * 2521 0 0 D 203 * * 3137 * * * * * * * * 3054 * * * 850 2244 * * * 203 0 * * * * * * 2521 0 0 T 204 * * * * * 3243 * * * * * * * 2106 * 1675 1519 * * * 204 559 1638 * 2328 320 * * 2521 1691 0 V 205 * * * 3377 3250 * * * * 5372 * 3120 * * 2195 3187 * 1594 * * 205 0 * * * * * * 2521 0 0 S 206 1725 * * * * * * * * 2201 * * 3092 3187 * 2128 * 5372 * * 206 381 2106 * 2322 322 * * 2521 1776 0 E 207 3305 * 3243 3137 * * * 1161 * * * * 3120 * * * * 3092 * * 207 161 3243 * 1585 585 * * 2521 1000 0 S 208 * * * * * 3092 * * * 3120 * * 855 * * 3137 3305 * * * 208 0 * * * * * * 2521 0 0 F 209 * * * * 612 * * * * 2183 * * * * * 5372 * 3305 * * 209 0 * * * * * * 2521 0 0 G 210 * * 3092 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244 2856 * * * * * 3702 * 2491 * * * * * 928 * * 3616 * * 244 0 * * * * * * 2704 0 0 W 245 * * 3513 3440 * * * * * * * 3445 * * * * 1365 * 3435 2013 245 0 * * * * * * 2704 0 0 G 246 * * * * * 0 * * * * * * * * * * * * * * 246 0 * * * * * * 2704 0 0 H 247 * * 1333 * * * 3254 * * * * * * 2073 * 2570 3440 * * * 247 0 * * * * * * 2704 0 0 F 248 * * * * 1153 * * 1706 * 3702 * * * * * * * 2582 * * 248 0 * * * * * * 2704 0 0 Y 249 * * * * 2147 * 3445 * * * * * * * * * * * * 551 249 0 * * * * * * 2704 0 0 I 250 2710 * * * * * * 1851 * 1976 * * * * * * * 1663 * * 250 0 * * * * * * 2704 0 0 N 251 * * * * * * * * * * * 0 * * * * * * * * 251 0 * * * * * * 2704 0 0 G 252 * * * * * 0 * * * * * * * * * * * * * * 252 214 2856 * 1000 1000 * * 2704 1000 0 Y 253 * * * * 1543 * * * * * 2856 * * * * * * * * 947 253 239 * 2710 * * * * 2704 0 0 N 254 * * * * * 1483 * * 2268 * * 3209 * * 2108 3404 * * * * 254 0 * * * * 0 * 2637 0 1171 F 255 * * * * 2117 * * 2534 * 3718 3440 * * * * * * 3616 * 1527 255 0 * * * 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277 3682 5434 * * * * * * * * * * * * * 3212 3436 * 517 * 277 0 * * * * 0 * 2555 0 1000 T 278 * * * * 3702 * 3718 * 2856 * * * * * * * 697 * 3440 * 278 0 * * * * * * 2704 0 0 I 279 3592 * * * 2865 * * 1248 * * * * * * * * * 1478 * * 279 0 * * * * * * 2888 0 0 A 280 546 * * * * * * * * * * * * * * 3144 * 3070 * 3592 280 0 * * * * * * 2888 0 0 Y 281 * * * * 2056 * * 3070 * 2188 3785 * * * * 3732 3144 * * 2644 281 0 * * * * * * 2888 0 0 T 282 1408 * * * * * * * * 2106 * * * * * 3780 2088 3592 * * 282 0 * * * * * * 2888 0 0 S 283 * * 3592 * * * * * 3677 * * 855 * * 3070 3455 3724 * * * 283 0 * * * * * * 2888 0 0 Y 284 * * * 3592 1755 * * * * 2865 * 2314 * * * * * * * 1824 284 0 * * * * * * 2888 0 0 T 285 2521 * * * * * * * * * * * * * * 3070 848 2728 * * 285 0 * * * * * * 2888 0 0 E 286 * * 1125 1694 * * * * * * * 3070 * * * * 3144 * * * 286 0 * * * * * * 2888 0 0 A 287 1361 * * * * * * * * * * * * * * * 2865 1079 * * 287 0 * * * * * * 2888 0 0 L 288 * * * * * * * * * 236 2730 * * * * * * 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