HHsearch 1.5 NAME c9t4vB_ FAM FILE c9t4vB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9t4vB_.a3m DATE Sat Nov 22 10:33:54 2025 LENG 87 match states, 87 columns in multiple alignment FILT 103 out of 259 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.4 EVD 0.3918 -1.1762 SEQ >ss_pred CCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCC >ss_conf 950010700013888799999999840655559999999999999999999999999985499742899999999981888888899 >Consensus kxxxkxxrdxxxxIxkxxIrrlaxxxGxxrISxdaxxxixxxxxxfixxixxxAxxxxxhxkRkTIxxxDVxxALkrxgxxxYGxxg >c9t4vB_ KRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG >UniRef50_UPI0000583F90(10-97:380) PREDICTED: similar to TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000583F90 E=2e-05 s/c=0.57 id=25% cov=95% ----KATDDKKYAIfSKDSIKTMAESAGHERLSEETAAILAEDVCYRLREAVQASAQFMKHSKRKRMTSDDVNKALRWSDvEPIHGYG- >UniRef50_B3L5R9(1009-1107:1192) Ccaat-box dna binding protein subunit b,putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L5R9_PLAKH E=1e-08 s/c=0.62 id=18% cov=95% ---KKIKPDSETLLPIANISRIMKRIlpASAKVAKESKDIIRECVTEFIQFLTSEvsekggqthASDRCVRERRKTISGEDILFSMEKLGfndyvEPLYK Y-- >UniRef50_C4VAY9(5-83:150) Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VAY9_NOSCE E=2e-09 s/c=0.80 id=26% cov=90% ------NRDEENSLPKSTVDRFVNNCLPKQItvSKDAKEMFSNCIIEFLKMISLKATTICEKEKKKTIAFEHLIKALEEKGFAEY---- >UniRef50_D0N7M9(21-95:474) Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0N7M9_PHYIN E=5e-09 s/c=0.83 id=25% cov=78% ------------------VRRFLLRAGFRSSSDRAAAEVRRHVSDFFRRIVGCMVVMMQHDGRRNFRLIDVKRACEHFGIRMYGY-- >UniRef50_P19267(3-67:69) DNA-binding protein HMf-2 n=20 Tax=Archaea RepID=HMFB_METFE E=1e-06 s/c=0.83 id=26% cov=70% ------------------IGRIIKDAGAERVSDDARITLAKILEEMGRDIASEAIKLARHAGRKTIKAEDIELAVRRF--------- >UniRef50_Q6CHS6(25-101:163) DNA polymerase epsilon subunit D n=1 Tax=Yarrowia lipolytica RepID=DPB4_YARLI E=1e-05 s/c=0.67 id=26% cov=54% ------------------------------ISKDALTAIQRAATLFVSYMASHGNASAEAGGRKKITPQDVFVALK----------- >UniRef50_UPI0001926F4A(34-107:329) PREDICTED: similar to nuclear transcription factor Y, gamma n=1 Tax=Hydra magnipapillata RepID=UPI0001926F4A E=5e-05 s/c=0.66 id=25% cov=79% ----------IQELPLARIKKIMKQdGEVKMISAEAPILFSKAAEIFISELTLRAWIHTEDNKRRTLQRNDIAMAITKY--------- >UniRef50_Q03761(403-495:539) Transcription initiation factor TFIID subunit 12 n=6 Tax=Saccharomyces cerevisiae RepID=TAF12_YEAST E=0.0004 s/c=0.49 id=24% cov=80% --------DTQRVMSKRKLRELVKTVGIDEgdgetvIDGDVEELLLDLADDFVTNVTAFSCRLAKHRKSDNLEARDIQLHLER---------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * 3395 * * * * 470 * * * * 2449 * * * * * * 1 0 * * * * * * 3858 0 0 R 2 * * * 2883 * * * * 3184 * * * 3196 * 632 * * * * * 2 0 * * * * * * 3858 0 0 H 3 * * * 3256 * * 2185 2883 2190 2537 3775 * * * * * * * * 3730 3 0 * * * * * * 3858 0 0 R 4 3073 * * * * * * * 1789 * 4014 * 3398 * 1201 * * * * * 4 0 * * * * * * 4130 0 0 K 5 * * * * * * * * 131 * * * * * 3531 * * * * * 5 0 * * * * * * 4431 0 0 V 6 3462 * * * * * * 2137 3653 2230 4085 4076 * 3885 * 3786 * 4450 * 3555 6 0 * * * * * * 4435 0 0 L 7 * 4158 * * * * * * 2934 2787 * 2604 * 2283 * 2248 3511 * * * 7 94 * 3994 * * * * 4732 0 0 R 8 * * 3568 * * * * * 2076 * * * 3725 * 884 4033 * * * * 8 0 * * * * * 0 4826 0 1000 D 9 * * 852 3973 * * 4000 * * 4307 * 4244 * * * 2883 3628 * * * 9 95 * 3973 * * 0 * 5211 0 1000 N 10 3350 * * 3846 * 4059 * 3841 3967 * * 2192 * * * 1910 2700 * * * 10 79 * 4234 * * * 0 5135 0 1000 I 11 4492 * * 2599 * * * 1191 4175 4407 * 3909 * 3844 * * 4196 4076 * * 11 0 * * * * 939 1063 5338 0 1576 Q 12 4565 * 3799 4838 * * * * 3785 4544 3639 3393 2562 3044 3212 * 4727 * * 3014 12 58 4664 * 2585 263 * 0 5603 1000 1000 G 13 3567 * * 4371 4568 1745 * * 3654 4727 * 4565 * * 3573 2980 * 2675 * * 13 0 * * * * 0 * 5603 0 1000 I 14 * * * * * * * 665 * 2110 4489 * * * * * * 3424 * * 14 46 4998 * 0 * * * 5893 1000 0 T 15 5057 * * * * * * * * * 5262 5033 1774 * * 1391 2528 3913 * * 15 131 5157 4088 2807 222 * * 5951 1000 0 K 16 5220 * * 5107 * * * 5354 629 4046 * 4231 * 4160 3768 5064 * * * * 16 0 * * * * * 0 6161 0 1599 P 17 1988 * 3505 3343 * 3835 * 5230 4410 4093 * 5189 2792 5286 4787 3364 5149 * * * 17 0 * * * * 889 1120 6186 0 1599 A 18 3469 4332 4512 * 4250 * * 4512 4001 * 4239 3971 3322 * 5255 2173 2783 5575 * 5240 18 0 * * * * * 0 6377 0 1000 I 19 5661 * * * 4339 * * 905 5606 3497 4911 * * * * * * 1974 * * 19 0 * * * * * 0 6401 0 1000 R 20 4510 * 4571 5876 * 5892 * 5661 1843 4677 * * * 3486 1447 4596 5080 * * 6015 20 0 * * * * * 0 6401 0 1000 R 21 5674 * 4688 5106 * * * 5951 2875 5495 5928 * * 5561 916 3799 5866 3616 * * 21 0 * * * * * 0 6431 0 1000 L 22 * 5457 * * 3257 * * 1830 * 1331 4034 * * * * * * 3384 * 4760 22 25 5880 * 2000 415 * 0 6452 1000 1000 A 23 919 * * * 5979 5745 * 3907 * 3307 3410 5936 5679 * * 5457 * 3105 * * 23 0 * * * * 0 * 6452 0 1000 R 24 * * 5687 2247 * * 5414 * 2102 4337 * 4672 * 4371 1618 6060 4808 * * * 24 33 5462 * 0 * * * 6468 1000 0 R 25 5624 * 4720 3771 * * 5575 4903 3856 * * 3634 * 3722 1920 2027 4124 5515 * * 25 52 4820 * 1723 521 * * 6468 1744 0 G 26 2254 4705 * 5913 5413 2071 4879 3216 6188 3892 6046 5601 * 6034 * 4186 5467 3225 * 5994 26 111 4551 4994 1000 1000 * * 6549 1584 0 G 27 5903 * * 4707 * 397 * * * 3964 * * * 5269 * 4160 5577 5754 * * 27 0 * * * * * 0 6616 0 1385 V 28 3044 4962 5233 * 4384 5427 6019 2384 4727 5579 5393 6212 4741 6217 4703 3782 * 1816 * * 28 24 5924 * 1000 1000 * 0 6769 1000 1385 K 29 2864 * 3639 3026 * 6365 5862 5301 1920 * 5878 5851 * 5749 3608 3924 3766 4476 * 5538 29 124 3898 6015 2000 415 0 * 6827 2408 1385 R 30 * * 5215 4887 5656 5804 * * 2200 * 4573 4172 6414 5421 1092 3950 5814 * * * 30 27 5761 * 2585 263 0 * 6915 1000 1000 I 31 * * * * * * * 1036 * 2605 3744 * * * * 5134 * 2029 * * 31 14 6708 * 1000 1000 * * 6947 1000 0 S 32 3595 * 4111 6135 * 4328 * * 5155 * * 4805 5567 4488 6209 773 3900 * * * 32 0 * * * * * * 6947 0 0 G 33 2776 5177 2338 4968 * 3330 6555 * 1975 * * 3430 4431 * 4976 4309 * * 6534 * 33 0 * * * * * * 6947 0 0 L 34 4072 * 1368 1604 * 5059 * * * 6354 * 4410 * * 4671 5283 4248 5847 * * 34 0 * * * * * * 6947 0 0 I 35 1270 3649 * * 6477 6508 * 3005 * 5010 6100 * * * * 3806 4403 2363 * * 35 0 * * * * * * 6947 0 0 Y 36 3172 6420 * 5279 6000 * * 4856 2664 3275 5933 * 4196 5461 3434 5440 6747 3288 * 2187 36 0 * * * * * * 6947 0 0 E 37 3671 6021 2632 1760 * 5159 * 4325 3639 5721 6257 4888 4556 3562 4875 4590 6310 6628 * * 37 0 * * * * * * 6947 0 0 E 38 2805 4953 5089 2266 6632 * 6000 4421 5145 2319 4970 6750 * 5850 6654 5056 2946 4466 * 6300 38 0 * * * * * * 6956 0 0 T 39 5136 * * * 3533 * * 1904 * 1579 3644 * * * * 5837 5080 2678 * * 39 0 * * * * * * 6984 0 0 R 40 2584 5553 5802 5594 * 6266 5849 6713 5841 4159 5024 4234 * 2754 2332 2894 4595 4228 * * 40 0 * * * * * * 6989 0 0 G 41 5017 * 3234 1825 * 6576 * 5750 2783 5160 6679 3400 6128 3672 3330 5208 5048 6222 * 6528 41 0 * * * * * * 7127 0 0 V 42 2420 2549 3688 4377 5596 * 4306 3328 5902 4823 4939 * * 5308 * 3479 6505 3653 * 4171 42 0 * * * * * * 7127 0 0 L 43 2265 3191 * * 4939 4884 * 3699 * 2558 5710 * * * * 3806 3792 2372 * 6241 43 0 * * * * * * 7127 0 0 K 44 * 6515 3268 1972 * 5863 * 4049 3279 * * 3792 * 6099 5038 2961 3359 3230 * * 44 0 * * * * * * 7062 0 0 V 45 5008 * 3437 1668 4991 * * 3772 4556 4112 6463 5536 * 4700 6746 4999 6394 3412 5045 3198 45 0 * * * * * * 7137 0 0 F 46 6360 * 6404 6486 808 * * 5455 6756 3963 6546 * * * 2415 5658 * * 6118 3943 46 0 * * * * * * 7064 0 0 L 47 3810 * * * 3570 6546 * 1696 * 1821 5052 * * * * 5976 * 2350 * * 47 0 * * * * * * 7064 0 0 E 48 4068 6292 4649 3271 * 4219 3792 7061 2909 3572 4937 4758 * 7133 2744 3244 3807 5032 * * 48 0 * * * * * * 7064 0 0 N 49 5696 5948 4287 2105 3860 * 4594 4236 5297 4505 4203 4478 * 3054 4500 4474 4790 5976 * 3520 49 0 * * * * * * 7064 0 0 V 50 5019 * * * * * * 1679 * 1871 4821 * * * * * 5312 1630 * * 50 27 5758 * 0 * * * 7064 1000 0 I 51 2616 5870 * * 6577 4558 * 3337 5849 2766 3984 * * * * 3006 2161 3437 * * 51 0 * * * * * * 7064 0 0 R 52 3390 4701 4054 3222 * 4173 5467 * 5156 4246 * 3944 * 3063 2941 2724 5120 4963 * 6270 52 0 * * * * * * 7064 0 0 D 53 4041 4109 1954 2366 5543 6704 5491 6578 3971 5579 5248 * * 3357 3084 * 5076 6753 * * 53 10 7143 * 3170 170 * * 7064 1000 0 A 54 727 5397 * 5759 * 5253 * 5486 * 3511 5286 * * * * 2882 * 4153 * * 54 0 * * * * * * 7064 0 0 V 55 3496 3854 * 6290 5899 6703 * 3416 4155 4279 4694 2708 * 4901 4980 2633 3922 3807 5089 5881 55 0 * * * * * * 7064 0 0 T 56 3957 * 3106 2947 * 4833 * 3080 2470 4434 4583 6518 * 4192 3760 6467 4155 4034 * * 56 0 * * * * * * 7064 0 0 Y 57 4640 4850 * 5988 2156 * 4439 2810 4797 3020 4900 5577 * 7076 5398 6520 5759 3663 * 2804 57 0 * * * * * * 7064 0 0 T 58 1471 2298 * * * * * 5163 * 5204 2647 * 6499 6137 * 4477 3063 4991 * * 58 0 * * * * * * 7064 0 0 E 59 5854 * 4196 2256 * 7186 5667 4804 2675 4911 6518 4475 5759 3280 2874 4780 4079 4124 * * 59 13 6749 * 2322 322 * * 7064 1000 0 H 60 4427 5860 5834 4464 * 4848 1221 * 3459 5667 6953 4885 * 5491 4357 3152 7526 * * 3874 60 0 * * * * * * 7064 0 0 A 61 2308 6232 4041 2777 6488 3499 5107 * 5204 * * 4189 * 5952 3314 2109 5724 * * * 61 32 5494 * 1743 512 * * 7064 1675 0 K 62 5488 * 4615 5078 * 2520 4263 * 1319 * 6833 3350 * 5182 3459 4874 5595 * * * 62 16 6513 * 2322 322 * * 7064 1000 0 R 63 5113 * * * * * * * 2740 * * * * * 394 4048 * * * * 63 0 * * * * * * 7064 0 0 K 64 5253 * 4641 5343 * 6819 * * 927 5881 * 6091 6137 3940 2946 4162 4071 5791 * * 64 16 6499 * 0 * * * 7064 1000 0 T 65 5723 * * * * * * 5601 4044 4421 5407 4764 * 4516 4426 * 568 5147 * * 65 0 * * * * * * 7064 0 0 V 66 * * * * 5286 * * 1306 * 2126 4450 * * * * * * 1760 * * 66 0 * * * * * * 7064 0 0 T 67 4361 * 3839 4021 6467 6678 * * 3440 4382 4149 3575 * 4929 4320 3199 1705 * * 5659 67 0 * * * * * * 7064 0 0 A 68 2472 5667 5927 5242 4322 3654 6516 4317 6208 5286 5911 * 2609 6428 4221 4351 2772 3695 * 6792 68 0 * * * * * * 7064 0 0 M 69 5273 6232 2685 2158 * * * 5286 3168 * 6799 4615 5767 2987 3586 3071 4388 * * * 69 0 * * * * * * 7064 0 0 D 70 * * 248 * * * 2960 * * * * * * * * * 5083 * * * 70 13 6749 * 1585 585 * * 7064 1000 0 V 71 * * * * * * * 1326 * 3995 5881 * * * * * * 980 * 6107 71 0 * * * * * * 7064 0 0 V 72 4803 5703 4580 4723 3933 6854 * 2619 3637 2188 5537 3333 * 3766 6631 5198 6669 3683 * 6733 72 0 * * * * * * 6798 0 0 Y 73 4272 * 6459 3795 4029 4750 4880 * 3369 2421 5240 4180 * 3826 3543 3967 4822 5347 5328 4006 73 0 * * * * * * 6798 0 0 A 74 610 5148 * * * 5341 4290 5764 * 3787 * * * * * 3726 5299 4943 * 5931 74 0 * * * * * * 6798 0 0 L 75 5468 5176 * * 5183 * * 3117 * 731 3252 * * * * 5147 6260 4100 * * 75 23 6833 7162 0 * * * 6788 1000 0 K 76 3611 * 4283 2384 * 4485 6498 * 1551 * * * * 3680 2847 4337 6423 * * * 76 71 4381 * 0 * * 0 7024 2162 1000 R 77 4724 * 3471 3745 * 4937 5121 * 4021 3643 6387 4342 * 5549 1231 4621 * 4947 6284 * 77 17 6413 * 0 * * 0 7076 1000 1000 Q 78 4866 * * * 3775 6033 * 4190 4417 1489 3800 3592 * 3376 4723 4602 6289 5582 * 4163 78 103 4184 6192 0 * 0 * 7015 1644 1000 G 79 * * 3367 * * 688 * 5880 * 4215 * 2463 * * * * * 5059 * * 79 285 2482 * 1022 978 * 0 6640 3246 1000 R 80 * * 4745 1861 2433 * 5592 3697 4287 3344 3523 4167 * 4355 5890 * 5365 * * 5504 80 70 5474 5334 0 * * 0 6564 1000 1000 T 81 4584 5514 4402 3158 * 6083 5425 5917 4495 5658 5382 4263 1636 4945 3238 3730 4423 * * * 81 0 * * * * 1037 964 6463 0 1569 L 82 5220 * 4157 4452 * 5571 4790 2559 * 2039 4083 6309 * 4647 5080 3930 * 3341 * 3384 82 44 5054 * 2000 415 0 * 6433 1000 1000 Y 83 * * * * 3940 * 5422 4283 * * * * 3804 * * * * * * 343 83 0 * * * * * * 6381 0 0 G 84 * * 3591 * * 181 * * 4849 * * * * * * * * * * * 84 0 * * * * * * 5423 0 0 F 85 * * * * 951 * * 4933 * * * * * * * * * * * 1152 85 0 * * * * * * 5163 0 0 G 86 * * * 2106 * 1078 * * 3428 * * 3282 * * * 3343 * * * * 86 0 * * * * * * 3548 0 0 G 87 * * * * * 0 * * * * * * * * * * * * * * 87 0 * * 0 * * * 3187 0 0 //