HHsearch 1.5 NAME c9rmuF_ FAM FILE c9rmuF_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9rmuF_.a3m DATE Sat Dec 13 10:19:40 2025 LENG 48 match states, 48 columns in multiple alignment FILT 42 out of 44 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.8 EVD 0.4392 1.6019 SEQ >ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCHHHHHCCC >ss_conf 913159999999994689799999819999999999985744252589 >Consensus xxdxixxAxxxHxxxHxnaxxLxxqfxipxxxArxIVxxCxxCqxxge >c9rmuF_ FVEQIPEAQEEHERYHNNWKDLKARFKLPTIVAKAIIEACPKCQVQGE >UniRef50_Q84809(796-843:1086) Pol polyprotein n=1 Tax=Puma lentivirus 14 RepID=Q84809_9RETR E=0.0005 s/c=0.95 id=37% cov=102% WMDNIEKAEDDHDKFHSDVVYLKQRFGIPRQVAEEIIRKCPLCMIKGE >UniRef50_P19560(1197-1240:1475) Integrase n=30 Tax=Bovine immunodeficiency virus RepID=POL_BIV29 E=1e-07 s/c=1.31 id=42% cov=94% FLENIPSATEDHERWHTSPDILVRQFHLPKRIAKEIVARCQECK---- >UniRef50_O91126(27-59:129) DNA polymerase (Fragment) n=1 Tax=Human immunodeficiency virus 2 RepID=O91126_9HIV2 E=3e-06 s/c=1.61 id=38% cov=71% -------------KYHSNVKEPSHKFGLPNLVARQIVNTCAQCQQE-- >UniRef50_UPI000194C19A(315-358:688) PREDICTED: similar to polymerase, partial n=3 Tax=Taeniopygia guttata RepID=UPI000194C19A E=7e-12 s/c=1.63 id=38% cov=94% --DVFQQAKLSHEHYHQNVPGLIRQFQLTRSQARAIVTNCPNCQLQ-- >UniRef50_UPI000194DFD9(621-662:997) PREDICTED: similar to polymerase n=9 Tax=Taeniopygia guttata RepID=UPI000194DFD9 E=6e-08 s/c=1.40 id=33% cov=88% ----LQEARQLHESLHIGAKALAKRCGISTADARHVVATCPHCQK--- >UniRef50_A8BDN6(573-612:879) Pol protein n=3 Tax=Bos taurus RepID=A8BDN6_BOVIN E=2e-06 s/c=1.34 id=34% cov=79% -------AMDEHTNVHTNAKSLHSKYHIPLTEARHIIKSCDVCT---- >UniRef50_P63135(591-629:1459) Integrase n=404 Tax=root RepID=POK12_HUMAN E=7e-08 s/c=1.49 id=38% cov=83% ------KAQELHALTHVNAAGLKNKFDVTWKQAKDIVQHCTQCQI--- >UniRef50_UPI0001555E52(649-686:961) PREDICTED: similar to signal peptidase complex subunit 2 homolog n=1 Tax=Ornithorhynchus anatinus RepID=UPI0001555E52 E=3e-06 s/c=1.39 id=26% cov=81% -----ESAQKAHALFHLPAVSLRRLYSLTKAEARGIVRRCTRC----- >UniRef50_P31623(588-632:870) Integrase n=24 Tax=root RepID=POL_JSRV E=2e-09 s/c=1.41 id=28% cov=96% FQSAIDAARKSHDLHHQNSHSLRLQFKISREAARQIVKSCSTCPQ--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * F 1 * * * * 628 * * * * * * * * * * * * * 1502 * 1 0 * * * * * * 2947 0 0 V 2 * * * * * * * 3548 * 982 3720 * * 3368 * * * 2086 * * 2 0 * * * * * * 3039 0 0 E 3 * * 1001 1379 * * * * * * * * * * * 3881 4380 * * * 3 0 * * * * * * 3388 0 0 Q 4 3264 * * * * 2736 * * 2164 * * 1852 * 4374 4250 * 3957 3635 * * 4 0 * * * * * * 3383 0 0 I 5 * * * * 3099 * * 882 * 1727 * * * * * * * 4689 * * 5 0 * * * * * * 3732 0 0 P 6 3904 * 2903 1726 * * * * * * * 5165 3210 1816 4430 * 5014 * * * 6 0 * * * * * * 3831 0 0 E 7 3506 * * 1576 * * * * 2614 4808 * * 4092 2125 * 3479 * * * * 7 0 * * * * * * 3873 0 0 A 8 0 * * * * * * * * * * * * * * * * * * * 8 0 * * * * * * 3950 0 0 Q 9 * * * 3525 5554 * * * 1692 * 5014 * * 1529 3006 * 4954 4379 * * 9 0 * * * * * * 3950 0 0 E 10 4527 * 2834 1412 * * * 3781 3834 2639 * 5530 * 3698 5840 * 5580 * * * 10 0 * * * * * * 3948 0 0 E 11 3497 * 2896 2451 4940 * * * 4414 3019 * 5088 * * * 1572 * * * 5284 11 0 * * * * * * 3950 0 0 H 12 * * * * * * 0 * * * * * * * * * * * * * 12 0 * * * * * * 3947 0 0 E 13 2180 * 3340 1768 * 5400 * * 4225 * * * * 3224 * 3101 3534 * * * 13 0 * * * * * * 3947 0 0 R 14 5133 * * * 2713 * 5536 5558 1829 2234 * 4100 * 4709 3271 5087 5291 * * 5198 14 0 * * * * * * 3963 0 0 Y 15 * * * * 1541 * 2981 * * 2947 * * * * * * 4830 5058 3182 2154 15 0 * * * * * * 3963 0 0 H 16 * * * * * * 0 * * * * * * * * * * * * * 16 0 * * * * * * 3963 0 0 N 17 * 5475 * * * * * 4110 * 3027 * 4627 * 1312 * 2530 3490 3449 * * 17 0 * * * * * * 3963 0 0 N 18 * * 3356 * * 2947 * 5371 * * * 756 5037 * * 3408 4972 * * * 18 0 * * * * * * 3963 0 0 W 19 932 * * * * * * 4445 5198 * * * 3109 * * 5625 4473 3034 3330 * 19 0 * * * * * * 3963 0 0 K 20 3823 * 5025 4972 * * 3872 * 1916 * * * 2568 3696 2519 * 4074 4210 * * 20 0 * * * * * * 3963 0 0 D 21 1356 * 4493 3991 * 2447 * 4083 * * * * * * * 2968 3646 * * 4266 21 0 * * * * * * 3963 0 0 L 22 * * * * * * * 5145 * 168 4092 * 5439 * * * * * * * 22 0 * * * * * * 3963 0 0 K 23 2313 * * * * * 4143 3838 3189 * * * * 4092 2289 2846 5371 2877 * * 23 0 * * * * * * 3963 0 0 A 24 5463 * 5785 * 4686 * 3563 * 2798 3892 * 4830 * 3841 1541 3496 5138 * * 4087 24 0 * * * * * * 3963 0 0 R 25 5133 * 3855 2659 * * * * 2712 5037 5608 5143 * 1399 3217 * 5291 * * * 25 0 * * * * * * 3963 0 0 F 26 * 2947 * * 502 * * * * 5709 * * * * * * * 4709 * 3225 26 0 * * * * * * 3963 0 0 K 27 4972 * 4830 5232 * 2861 2121 * 2638 * * 2290 * 3086 * 4159 * * * * 27 0 * * * * * * 3963 0 0 L 28 * * * * * * * 908 * 1286 * * * * * * * 4135 * * 28 0 * * * * * * 3963 0 0 P 29 * * * * * * * * 4709 * * * 980 * 5485 2271 2149 * * * 29 0 * * * * * * 3963 0 0 T 30 5198 4709 * * * * 5995 * 2852 2672 4210 5439 3318 * 1479 * 4262 * 4830 * 30 0 * * * * * * 3963 0 0 I 31 3270 * 3005 2461 * * * 3860 3449 3563 * * * 4264 5025 5536 2459 4083 * * 31 0 * * * * * * 3963 0 0 V 32 3876 * 5087 2402 * * 5564 4349 * * * * * 1583 * 4732 * 1881 * * 32 0 * * * * * * 3963 0 0 A 33 127 * * * * 4709 * * * * * * * * * * * 4436 * * 33 0 * * * * * * 3963 0 0 K 34 * * * 2743 * * * * 2000 * * 5612 * 5145 930 * 5198 * * * 34 0 * * * * * * 3963 0 0 A 35 2194 * 3534 1750 * 4213 4072 * * 5779 * 5145 * 2382 4436 * * * * * 35 0 * * * * * * 3963 0 0 I 36 * * * * * * * 200 * 4436 * * * * * * * 3583 * * 36 0 * * * * * * 3963 0 0 I 37 * * * * 5564 * * 3071 5138 4390 5485 * * * * * 5143 448 * * 37 0 * * * * * * 3963 0 0 E 38 1816 * * 4438 * * * * 2256 * * 3482 * 2788 2532 * 4227 * * * 38 0 * * * * * * 3963 0 0 A 39 2900 * * 5143 * * 4830 * 4266 4817 * 5536 5709 3008 4031 1902 2176 * * * 39 0 * * * * * * 3963 0 0 C 40 * 0 * * * * * * * * * * * * * * * * * * 40 0 * * * * * * 3963 0 0 P 41 4405 * 3480 4288 * * * * * 3624 * 5475 1071 3999 * 3264 3930 * * * 41 0 * * * * * * 3963 0 0 K 42 * * 4449 5025 * * 2243 5232 2651 4266 * 3492 * 2813 5037 3124 3878 5058 * * 42 0 * * * * * * 3963 0 0 C 43 * 0 * * * * * * * * * * * * * * * * * * 43 0 * * * * * * 3963 0 0 Q 44 * * * * * * 3919 * 2820 * 4758 * 4711 842 4630 4652 3660 * * * 44 0 * * * * * * 3804 0 0 V 45 * * * * * * * 2087 1745 2461 * * * 2098 * * * 4291 * * 45 0 * * * * * * 3522 0 0 Q 46 * * * 4026 * * * * 1077 * * * * 1387 3607 * * * * * 46 0 * * * * * * 2957 0 0 G 47 * * * * * 0 * * * * * * * * * * * * * * 47 0 * * * * * * 2390 0 0 E 48 * * * 0 * * * * * * * * * * * * * * * * 48 0 * * 0 * * * 2213 0 0 //