HHsearch 1.5 NAME c9raiD_ FAM FILE c9raiD_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9raiD_.a3m DATE Sat Sep 13 09:12:19 2025 LENG 98 match states, 98 columns in multiple alignment FILT 83 out of 85 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.4 EVD 0.4143 -0.4518 SEQ >ss_pred CCEEEEEECCHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC >ss_conf 97599996998999999976221346777421879899999998567679301999999999523800056999998889774337999999867898 >Consensus sxxxixxFxxfedvixxaxxlxxxxxxxxsxLYkxxxxYyLxlxxxxxxxxxxxxxxxailxEygxxsxxtxxxlxEhgkxIxxxxAlexlxxyFxxx >c9raiD_ TRTIIVKFNDLEDVINYAYHSNPITTEFEDLLYMVDGTYYYAVYFDSHVDQEVINDSYSQLLEFAYPTDRTEVYLNDYAKIIMSHNVTAQVRRYFPET >UniRef50_C7W4J7(8-103:103) Adaptor protein n=1 Tax=Enterococcus faecalis E1Sol RepID=C7W4J7_ENTFA E=1e-06 s/c=0.56 id=22% cov=99% NRNVIFELDNFEAMIQLSKEV-FMQSVLTNLYTYNDRYYLQVLFLTDELEKTNVDNEIAQILEFAHKTTVTQDTLVEYGTCIMERSALELTRYYFND- >UniRef50_C5RA48(160-255:256) Competence negative regulator MecA n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RA48_WEIPA E=4e-05 s/c=0.51 id=23% cov=97% -QELVLQFDDFENIIQFSLMMQKQDFAFSTKLVKYHSKFYYILGIDGQALQNnyDIKDLTGVAREFAKVSEVSAEVLVEHGQIVFNDNALEQVLSYF--- >UniRef50_C2EA33(162-256:258) Competence negative regulator MecA n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2EA33_9LACO E=2e-17 s/c=0.95 id=25% cov=95% -KHFLVNFVNFENFIGLASVFP--YSNVVSNLYAYDGQYFLeLVFFESEMTSDQVKDALSLAYEYGDPVNFSVDVVRERGKLIMEHAAIEIARYHF--- >UniRef50_Q04BL8(151-244:249) Negative regulator of genetic competence, sporulation and motility n=2 Tax=Lactobacillus delbrueckii subsp. bulgaricus RepID=Q04BL8_LACDB E=1e-14 s/c=0.86 id=17% cov=95% -ETHVLVFDDIDDLLALADSLKV--SDLASSVYYYKQQFYLKLAFmDENYAEIKPADAWAIANEFGRQVSADEFQQAQaHGQCLFQQDALGALRRQF--- >UniRef50_Q9KCF1(104-196:201) Adapter protein mecA 1 n=4 Tax=Bacillus RepID=MECA1_BACHD E=4e-15 s/c=0.89 id=21% cov=96% SDEVFYEFADIEDVISLVPRLVTLGMTG-GTLYSYQGRYYISFT-DLDLDGIDEESLIALLAEYGYPSTISTYRVAEYGSLIIANDACIKLYQSF--- >UniRef50_C0CT21(170-263:264) Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0CT21_9CLOT E=2e-13 s/c=0.82 id=17% cov=92% --TRIFRFENLDRICEAARAVGGLYSGV-NTLFKKPGtrQYYLVMKRKG-GGDLEFSRSCNILAEYAmklSNEYASEAYFREHYEVMIADKALQDLQK-- --- >UniRef50_A2RCI9(162-249:253) Adapter protein mecA n=33 Tax=Streptococcus RepID=MECA_STRPG E=4e-11 s/c=0.78 id=17% cov=90% ----VLDFSTITEAVAFAKTID--FSIEASELYKGSNCYHMTILLDVQQQPSYFANVMyARLIEHANPGSKTRAYLQEHGLQLMLDGAVEQLQK----- >UniRef50_B0P6C8(96-188:189) Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6C8_9FIRM E=1e-10 s/c=0.73 id=24% cov=91% ---VIYAFDDVDTLIACAVKLfgRCAQRIRKSALYHTGKNWILAVY----PARERQDDTLMLLDEFARrcgEGALAKAWLGEHARTVVDDNAVGLLCAYF --- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * 2724 * * * 737 2009 * * * 1 0 * * * * * * 4379 0 0 R 2 * * 2758 3413 * * * * 2081 3236 * 3590 * 4314 2502 4460 4048 * * * 2 0 * * * * * * 4866 0 0 T 3 * * 4114 2510 * * 4303 4153 4911 5346 * 4405 * 3901 * 5360 1109 * * * 3 0 * * * * * * 5638 0 0 I 4 5638 * * * 3778 * 4957 3073 5233 2472 4336 * * * 2946 * 4905 1571 * * 4 0 * * * * * * 6038 0 0 I 5 5401 * * * 5086 * * 1601 * 2368 4377 * * * * * 4363 1709 5576 * 5 0 * * * * * * 6352 0 0 V 6 * * * * 1650 * * 4472 * 2620 6047 * * * * * * 2689 5678 1817 6 0 * * * * * * 6473 0 0 K 7 3340 5460 5608 3099 6359 5251 5774 4638 2740 5876 6482 6289 * 3976 3637 2123 6405 3869 * * 7 0 * * * * * * 6493 0 0 F 8 * * * * 218 * * 5014 * 3439 * * * * * * * * * 5888 8 0 * * * * * * 6582 0 0 N 9 3676 * 1524 3849 * 5725 5083 * 4674 * 5203 3948 4338 4431 3713 3084 6061 6388 * 6907 9 0 * * * * * * 6580 0 0 D 10 5860 * 1464 * * 5877 6907 * 5122 6583 * 2720 * 5441 5312 1891 3539 * * * 10 0 * * * * * * 6580 0 0 L 11 * * * * 1136 * * 2929 * 1468 5827 * * * * * * 5873 * 5843 11 0 * * * * * * 6667 0 0 E 12 * * 1563 873 * 5263 6184 * * * * 6348 * * * 4823 5156 * * * 12 0 * * * * * * 6667 0 0 D 13 4256 * 1137 2840 * * 5404 * * 5848 * 3136 * 3926 5024 6179 3762 6095 * * 13 0 * * * * * * 6667 0 0 V 14 3471 * * * 3417 * * 2319 * 2119 3828 * * * * * * 1666 * * 14 0 * * * * * * 6667 0 0 I 15 4109 4526 6315 * * * * 1168 6037 2561 5003 * * * * 4596 4482 2846 * * 15 0 * * * * * * 6667 0 0 N 16 2556 6179 3832 3186 6073 4418 * * 5006 * * 4066 5777 2659 4666 1975 6248 * * * 16 25 5843 * 0 * * * 6667 1000 0 Y 17 1986 5873 * * 3209 * * 5394 * 1363 5169 * * * * 6039 * 3330 * 3891 17 0 * * * * * * 6667 0 0 A 18 980 3284 * * * 6162 * 4979 * 6159 6107 * * * * 2163 4514 4351 * * 18 34 * 5403 * * * * 6667 0 0 Y 19 3971 * 3704 * * 4635 3390 6326 1914 5990 * 4414 6283 4720 2444 4239 4616 5173 * 5198 19 24 * 5894 * * 968 1032 6654 0 1624 H 20 3465 * 6435 4704 4519 4954 3651 3832 4590 3461 5028 6363 * 4356 2722 3590 5039 3089 * 5199 20 34 * 5409 * * 1401 687 6647 0 1988 S 21 4215 * * * 6446 * 6191 2520 5715 995 4820 * * * * 6100 4332 2984 * * 21 275 4528 2944 1000 1000 2085 388 6622 1945 2285 N 22 3774 6329 4286 3643 6253 3837 3821 * 3269 5908 * 2651 3330 3991 2953 5607 * 5273 * 6397 22 192 * 3005 * * 1140 872 6483 0 4319 P 23 3637 4822 4627 * 4317 2540 6037 4126 4211 3976 6265 4847 3398 4373 4989 4185 4431 3212 * * 23 233 * 2744 * * 1162 855 6427 0 4684 I 24 4153 * 3540 5808 2919 * 5952 3256 5562 2753 3041 6505 * 4519 * 4377 3739 4937 * 3545 24 92 * 4024 * * 1024 977 6445 0 4696 T 25 5295 5736 2882 3856 2683 2870 * * * * * 5600 4250 4259 * 4180 3591 6658 * 2434 25 43 * 5084 * * 260 2602 6551 0 3887 T 26 5797 5550 2916 3251 3333 6113 6571 * 4201 3818 5130 4483 * 4315 3717 2797 3697 5331 6318 5986 26 72 * 4361 * * 992 1008 6582 0 2601 E 27 4605 * 2921 2829 * 2083 4341 4255 4924 4705 5775 3442 4074 5120 * 6397 4272 6053 * * 27 295 6269 2542 1000 1000 0 * 6625 1000 3204 F 28 4888 * * 4136 3669 3850 * 3747 * 2488 5024 3653 5731 6125 5616 3835 6118 2018 * 6213 28 193 * 2997 * * 294 2439 6538 0 4160 E 29 2524 * 3301 2295 * 5133 6174 5104 3065 6470 * 6344 4954 * 5436 3076 3996 4128 6325 * 29 43 5880 6368 0 * 0 * 6555 1000 3871 D 30 4688 6240 4874 * * 3222 * * * 5577 * 2538 * * 5680 1021 3301 * * * 30 0 * * * * 0 * 6672 0 1000 L 31 4119 * 3559 3615 * * * 6315 4453 3627 * 4150 * 6095 3775 1686 2664 6179 * 6570 31 0 * * * * * * 6667 0 0 L 32 * * * * 5843 * * 6261 * 202 6685 * * * * * * 4774 * 4207 32 0 * * * * * * 6667 0 0 Y 33 5897 * * * 3724 * * 5754 * * * * * * 6433 6168 6237 6027 * 260 33 0 * * * * * * 6667 0 0 M 34 6431 * * 5691 5206 * 3438 6245 1331 5519 4567 * * 6374 3150 3524 4218 6039 5897 3687 34 78 4245 * 803 1228 * * 6667 2481 0 V 35 * * 3103 5185 2497 5791 6362 * 4508 4599 6515 3278 * 4746 6159 * 5873 5019 6581 1557 35 134 3495 * 1000 1000 * * 6667 2922 0 D 36 6184 * 1842 2416 * 5102 4935 * 4598 * * 3204 5647 2834 6213 3463 4918 6536 * * 36 28 5720 * 1000 1000 * * 6667 1502 0 G 37 6433 * 2370 4028 * 1380 4666 6315 3693 * * 3232 * 4474 5124 4645 * * * * 37 29 5647 * 1000 1000 * * 6667 1216 0 T 38 4146 5791 6520 4294 * 5878 4586 3764 2242 5603 * 3982 * 3856 2366 5754 4314 4976 5777 4207 38 71 4386 * 1000 1000 * * 6667 2259 0 Y 39 * * * * 2927 * * * * 5758 * * * * * * * * 4413 316 39 15 * 6609 * * * * 6637 0 0 Y 40 * * * * 3314 * 5881 3783 * 3917 5977 * * 5613 * 6589 * 5265 5850 614 40 0 * * * * 0 * 6641 0 1000 Y 41 * * * 5289 5454 * * 4703 * 385 3941 * * 6235 * * * 5225 * 4569 41 76 5217 5360 0 * * * 6637 1728 0 A 42 3435 * 5829 4616 6821 * 5352 4072 5149 2385 6485 5615 * 4321 6143 3401 3537 2231 5529 5298 42 35 * 5376 * * * 0 6611 0 1351 V 43 * * 5948 * 5245 * * 2649 * 1402 3561 * * 6557 * * * 1625 * * 43 181 4103 4069 0 * 1038 963 6582 2492 2256 Y 44 4561 6334 2945 3157 3986 5903 2968 * 5549 3428 * 5930 * 4848 5091 3498 3005 * * 3510 44 307 6585 2462 1000 1000 2355 314 6521 1000 3037 F 45 6148 5857 4983 4574 1409 5813 5154 3577 5654 3161 * 4068 6171 * 4646 3656 * 3956 * * 45 194 3939 4048 0 * 571 1614 6378 2364 4814 D 46 * * 1992 4031 5142 4965 5949 3950 2941 3695 6339 5110 3274 3723 * 5024 4255 4827 * * 46 40 6476 5981 0 * 1760 505 6491 1000 4064 S 47 4495 6790 2539 2507 6221 2976 5750 * 5056 5096 * 3153 6346 3620 * 3034 * 4264 * * 47 117 6447 3909 0 * 1506 626 6467 1000 3597 H 48 5666 * 3285 2107 * * 6047 6444 4663 5498 * 2451 3977 3746 3956 3348 4808 4712 * * 48 143 4789 4102 761 1287 520 1725 6465 1981 4006 V 49 4371 4961 5690 4752 5810 4188 4914 4843 5729 2241 3243 6546 4978 4537 * 4404 4784 4049 6432 2783 49 46 7001 5424 0 * 455 1885 6544 1000 3485 D 50 3782 * 2759 2934 5941 3806 * 6297 4737 5965 * 5525 5172 4997 * 1858 3056 5808 * * 50 18 * 6340 * * 377 2121 6569 0 2283 Q 51 * * 3981 2706 * 4906 * * 2717 6101 6513 3846 2577 2813 3503 4127 4751 6570 * * 51 67 6952 4741 1000 1000 * 0 6620 1000 1635 E 52 4457 * 3563 1734 * 5146 5143 5113 3838 3570 4744 4380 * 4708 * 3748 4382 3579 * * 52 65 5972 5140 1000 1000 707 1369 6593 1000 2980 V 53 * * 2210 2943 * 5085 4801 * 3196 6523 5177 3778 5332 3664 4458 3778 3916 4300 6525 5807 53 23 5980 * 0 * 978 1022 6599 1000 2578 I 54 5409 * * 3550 2359 6195 5546 3121 4362 2996 * * 3535 4267 5754 5268 * 2750 6342 5137 54 0 * * * * 934 1069 6612 0 1608 N 55 2791 * 3312 2791 * 4705 4941 5488 3033 4742 6096 2843 6587 4769 3725 4582 6199 6126 * 6465 55 13 * 6767 * * * 0 6626 0 1000 D 56 3831 * 1906 5513 6782 5875 * 6244 3144 6203 * 2644 5858 4280 2872 3898 5199 * 6013 * 56 14 * 6708 * * 0 * 6630 0 1562 S 57 3776 * * 3883 3845 * 6240 2861 5159 2618 4977 6224 * 4315 4579 4689 3916 2361 * 6513 57 0 * * * * * 0 6637 0 1000 Y 58 3840 2288 * 6573 5395 * * 2230 6240 2807 4485 5758 * 4978 5124 6092 4658 5066 3730 4687 58 47 4978 * 0 * 0 * 6637 1681 1000 S 59 1450 * 6792 * 4944 4587 * 6188 * 5348 4815 2639 4690 6104 * 2352 6342 4546 * 6364 59 0 * * * * * * 6637 0 0 Q 60 * 5892 * 5265 6484 * * 1786 6027 1841 4507 * * 3748 3967 6500 5050 2858 * * 60 20 6160 * 0 * * * 6637 1000 0 L 61 1899 6043 * * * * * 2859 * 1281 3431 * * * * 5441 6273 4691 * * 61 0 * * * * * * 6637 0 0 L 62 3216 * 4618 5115 5441 4901 * 4209 5769 2582 5088 3394 * * 4156 2162 4914 5129 * 4031 62 0 * * * * * * 6637 0 0 E 63 * * 5059 44 * * * * * * * * * * * * * * * * 63 0 * * * * * * 6637 0 0 F 64 * * * * 1460 * 5123 * * * * * * * * * * * * 718 64 0 * * * * * * 6637 0 0 A 65 1838 6104 * * * 644 * * * 5107 * 5924 * * * 5609 * * * * 65 152 3325 * 1453 656 * * 6637 3381 0 Y 66 4678 * 4196 2189 * * 4793 6045 2982 6779 * 2528 * 6534 3137 4443 3394 6342 * 4353 66 165 3211 * 1278 767 * * 6637 3573 0 P 67 2892 * 6027 2864 4096 * * 4840 3281 4941 4586 4848 2485 4894 3036 6739 4762 6033 * 6410 67 126 3583 * 1942 435 * * 6637 3309 0 T 68 4855 * 4276 3294 * 4371 * 5963 * 5404 6160 6792 * 5295 * 1407 2152 3772 * * 68 14 6662 * 1585 585 * * 6637 1000 0 D 69 3825 * 2716 4084 * 5089 5057 5247 3372 * * 3304 4966 6792 4243 3007 3357 4838 * 3576 69 66 4480 * 1585 585 * * 6637 2231 0 R 70 1970 6224 6121 4709 5097 5924 * 2636 3531 3796 5836 * * 5388 5321 6395 6672 2271 * 5758 70 37 5290 * 1585 585 * * 6637 1605 0 T 71 4192 * 5177 4229 6627 4434 * 5963 3973 5892 * 6273 * 4884 5691 2022 1325 * * * 71 0 * * * * * * 6637 0 0 E 72 4617 * 5586 2280 4567 5454 6557 3077 4612 5334 5225 * 2779 4443 3795 3845 4093 5073 6185 6554 72 17 6395 * 1585 585 * * 6637 1000 0 V 73 1593 * 3545 3604 5174 * 3222 5441 6209 3698 6367 4413 6550 5845 * 4824 * 5217 6369 3463 73 61 4602 * 1442 662 * * 6637 1963 0 Y 74 * * * * 2458 * 5620 6484 5845 3748 3434 * * 6114 2931 * 3789 2680 5874 2243 74 32 5515 * 1585 585 * * 6637 1610 0 L 75 * * * * 2793 * * 3125 * 928 4662 * * 6114 * * * 2948 * 4972 75 0 * * * * * * 6637 0 0 N 76 2865 * 6976 3007 * 4862 6557 * 2366 6045 3688 3187 * 3438 3699 4001 5758 4691 * * 76 19 6224 * 1585 585 * * 6637 1000 0 D 77 * * 5217 133 * * 6114 * 5845 * * 6043 * 6114 * * * * * * 77 21 6114 * 0 * * * 6637 1000 0 Y 78 * * * * * * 832 * * * * 4941 * * 4417 * 6209 * * 1534 78 0 * * * * * * 6637 0 0 A 79 2864 4315 * 6500 4305 679 * * 6597 6104 6547 * * * * 6673 * * * 3630 79 0 * * * * * * 6637 0 0 K 80 * * 3628 2409 * 6597 5187 5174 1364 5270 * 4481 * 3678 4251 5349 4296 * * * 80 0 * * * * * * 6637 0 0 I 81 6237 2055 * 4981 * * * 3370 4104 1930 6364 * 6273 5382 5491 5892 3838 2848 * * 81 0 * * * * * * 6637 0 0 I 82 * * * * * * * 739 * 1927 6418 * * * * * * 2985 * * 82 12 * 6932 * * * * 6637 0 0 M 83 6511 6038 * * 3512 * * 1963 * 2331 1749 * * 5419 5755 * * 3698 * 6110 83 0 * * * * 0 * 6648 0 1000 S 84 2446 * 3139 2063 * 4926 * * 2878 5097 * 4273 4833 4803 4552 3777 6377 6027 * * 84 0 * * * * * * 6637 0 0 H 85 6698 * 2660 2431 5769 4332 3774 6673 4037 * * 3173 * 3192 3147 5731 4534 5090 * 6595 85 0 * * * * * * 6637 0 0 N 86 4758 * 2287 4324 * 5879 4135 * 3038 * * 1737 6748 4323 4729 3436 5434 * * * 86 0 * * * * * * 6627 0 0 V 87 147 5765 * * * * * * * * * * * * * * 5229 4262 * * 87 0 * * * * * * 6627 0 0 T 88 * 6256 * * 4575 * * 2083 * 1330 * * 4800 * * * 5210 2011 * * 88 0 * * * * * * 6627 0 0 A 89 3068 * 4311 1269 * 4331 4978 6231 4955 * * 6368 * 2637 4691 3906 6605 * * * 89 0 * * * * * * 6648 0 0 Q 90 5075 * 5141 3855 5683 5946 6045 4887 3467 3036 5314 4559 * 2371 6425 5945 2401 3354 * * 90 0 * * * * * * 6593 0 0 V 91 4069 * * * 5194 6109 * 2304 * 1018 4571 * * * * * 3790 3505 * * 91 0 * * * * * * 6593 0 0 R 92 4379 4062 * * 5651 * 6150 * 2302 3449 * 5017 * 3258 1692 5073 5661 4815 * 4887 92 0 * * * * * * 6532 0 0 R 93 4460 * 4922 4137 4706 * 3784 * 2295 * * 4336 * 4031 2229 4339 4304 * * 2987 93 0 * * * * * * 6450 0 0 Y 94 5546 * * * 4684 * 2414 5455 4437 5631 * 3737 * 5365 * 5577 * * * 882 94 0 * * * * * * 5892 0 0 F 95 * * * * 0 * * * * * * * * * * * * * * * 95 0 * * * * * * 5738 0 0 P 96 * * * * * * * * * * * 2089 387 * * * * * * * 96 0 * * * * * * 3310 0 0 E 97 * * 423 1975 * * * * * * * * * * * * * * * * 97 0 * * * * * * 1919 0 0 T 98 * * * * * * * * * * * * * * * * 0 * * * 98 0 * * 0 * * * 1154 0 0 //