HHsearch 1.5 NAME c9oogL_ FAM FILE c9oogL_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9oogL_.a3m DATE Sat Nov 15 09:54:27 2025 LENG 127 match states, 127 columns in multiple alignment FILT 63 out of 65 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.0 EVD 0.4068 -1.1511 SEQ >ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHC >ss_conf 9630221347799999999999999999999996876887799999988764413444442054754055465210001333321201477651247899 998679999999999999998777629 >Consensus xxgxlxaagsxmgxxsxxltvQxxxllqqxllqltvwGiKxLqaRvxalExylkdQxlLxxwGCsxkxichtxvpwnxswxnxsxxxiWxNmTWqqWekx IxnxtxxIxxlLeeAqxQQekNxxeLl >c9oogL_ RRGFLGAAGSTMGAASITLTVQARQLLSQHLLKLGVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNKSLDEIWNNMTWLQWDKE IGNYTQLIYRLIEESQNQQEKNEKELL >UniRef50_Q70IG7(528-669:864) Envelope glycoprotein gp160 n=3 Tax=Primate lentivirus group RepID=Q70IG7_SIVCZ E=9e-41 s/c=1.18 id=45% cov=98% --GFLSAAGTVMGAVGTGLAVQSRDLLAgivqqqqellraveghSALLQLSVWGIKNLNARLTAIEKYLKDQALLNEWGCAWKQICHTSVEWSNQSIPgl ALYQPDFQNMTWQQWETDIAALFGNVSDALKKAQAQQERNVHEV- >UniRef50_Q99FH6(520-656:837) Envelope glycoprotein n=1 Tax=Simian immunodeficiency virus RepID=Q99FH6_SIVCZ E=3e-35 s/c=1.09 id=46% cov=95% ---LLSGAGAAMGSASVALTIQAQSLngrasassnrmllklveTQSALLQLTVWGVKNLQVRVATIEGYLEEQAKLASIGCANMQICRTIVPWNKTWGE- --EDPWQNMTWKQWHERVRNYTDIIEADLVEAYDLQEENEKKL- >UniRef50_Q64G66(10-98:98) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G66_9HIV1 E=3e-16 s/c=0.97 id=45% cov=56% ---------------------------------------------VLAIKKYLKNQPLLGISGCSCKTHLHHCCTLGLYWSLQSQKKIQNHITYMQWNKK ISNYTGTIYKLLNES------------ >UniRef50_B7FCA6(553-689:884) Env protein n=2 Tax=Simian immunodeficiency virus RepID=B7FCA6_SIVCZ E=3e-37 s/c=1.13 id=48% cov=96% --GFLGLAGSAMGTVSTVLTIQSQHLLagilqqqknllelvekQQELLRLTIWGVKNLQARLSAIEGFLEDQLKLKQWGCELTQVCHTNVPWNESW---N ATPNWNNETWQHWYRRTDELQANISVLLVEAHNTEQKNMFEL- >UniRef50_Q9DKV4(565-702:849) Envelope n=25 Tax=Ovine/caprine lentivirus group RepID=Q9DKV4_CAEV E=9e-22 s/c=0.75 id=26% cov=94% ---IVAAAGASLGVAnaiqqsytrdavqtlANATAVQQQVLEASyAMIQHVAKGIRILEARVARMEVMMDRMMLYQEVDCWHYHQYCVTSTRADIVNYIN WTRFKDNCTWQEWEREISAHEGNITILLKESaritQLAQQK------ >UniRef50_Q3Y649(22-112:142) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q3Y649_9HIV1 E=2e-16 s/c=0.96 id=47% cov=72% -------------------------------------GHKQLQARVLGSWKdTSRDQQLLGIWGCSGKLICTTNVPWNSSWSLNLRVRYGTTCPGCNGIK KLAITHRQYINYLKNRKTSKEKNEQDLL >UniRef50_Q3Y655(2-104:143) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q3Y655_9HIV1 E=6e-15 s/c=0.79 id=39% cov=62% ----------------------------------------------SALERYLKDQQLLGIWGCSGNSSAPLLCLGTLVGVINLSMIFGRTCLGCSGIEK LSNYTNTIYKLLEDSQIQQDNNEK--- >UniRef50_Q64G54(17-106:139) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G54_9HIV1 E=3e-13 s/c=0.84 id=31% cov=71% -------------------------------------GIKQLQTRVLALGKIPKGSTAPRNLGLLWKTHLHHCCAVESSWSNKSQGAIWvTRLGWSAIEK LIITQT-HYTGCLKNRKTSRNKLKRDLL >UniRef50_Q64FP6(13-106:144) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q64FP6_9HIV1 E=9e-08 s/c=0.61 id=50% cov=31% ----------------------------------------------------------------------------------NPLNEIWNNMTWQPWDKE ISNFHTDIYSLIEDRRTSRKR------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * * * * * * * * * * * * 0 * * * * * 1 0 * * * * * * 1000 0 0 R 2 * * * * * * * * * * * * * * 0 * * * * * 2 0 * * * * * * 1000 0 0 G 3 * * * * * 0 * * * * * * * * * * * * * * 3 0 * * * * * * 2278 0 0 F 4 * * * * 699 * * 2599 * 2896 * * * * * * * 3566 * * 4 0 * * * * * * 2729 0 0 L 5 * * * * * * * * * 260 * * * * * * * 2599 * * 5 0 * * * * * * 2729 0 0 G 6 1948 * * * * 1709 * * * * * * * * * 1201 * * * * 6 0 * * * * * * 2729 0 0 A 7 449 * * * * 4142 * * * 4073 * * * * * * 2722 * * * 7 0 * * * * * * 2729 0 0 A 8 0 * * * * * * * * * * * * * * * * * * * 8 0 * * * * * * 2760 0 0 G 9 * * * * * 0 * * * * * * * * * * * * * * 9 0 * * * * * * 2802 0 0 S 10 2580 * * * * 5114 * * * * * * * * * 806 2109 * * * 10 0 * * * * * * 3077 0 0 T 11 1090 * * * * * * * * * * * * * * 2810 1522 4663 * * 11 0 * * * * * * 3077 0 0 M 12 * * * * * 4627 * * * 3323 400 * * * * * * 3294 * * 12 0 * * * * * * 3098 0 0 G 13 * * * * * 195 * * * * * * * 3294 * 5362 * * * * 13 0 * * * * * * 3098 0 0 A 14 939 * * * * * * * * 4926 * * * 4627 * 2258 3377 3323 * * 14 0 * * * * * * 3098 0 0 A 15 797 * * * * * * * * 2812 * * * * 4560 * * 2061 * * 15 152 3323 * 3907 100 * * 3098 1118 0 S 16 1311 * * * * 4695 * * * 4627 * * * * * 950 * * * * 16 0 * * * * * * 3098 0 0 I 17 * * * * * * * 3146 * 4612 5691 2309 * * * 4627 1421 2244 * * 17 0 * * * * * * 3098 0 0 T 18 812 * * * * 3661 * 3948 * * * * * * * * 2170 3957 * * 18 0 * * * * * * 3098 0 0 L 19 * * * * * * * 4627 * 400 * * * * * * 2309 * * * 19 0 * * * * * * 3098 0 0 T 20 1890 * * * * * * * * * * * * * * 4400 639 4627 * * 20 0 * * * * * * 3098 0 0 V 21 2179 * * * * 5744 * 3285 * 4850 * * * 4627 * * * 779 * * 21 0 * * * * * * 3098 0 0 Q 22 * * * * * * * * * * * * * 54 4754 * * * * * 22 0 * * * * * * 3097 0 0 A 23 1829 * * * * * * * * * * * * 1936 * 1445 3475 * * * 23 0 * * * * * * 3097 0 0 R 24 * * * 3316 * * 3947 * 5492 * * 4649 * 1748 1171 5019 * * * * 24 0 * * * * * * 3097 0 0 Q 25 4961 * 4722 * * 5483 3014 * * * * 3520 * 2621 * 2488 2674 2327 * * 25 0 * * * * * * 3097 0 0 L 26 * * * * * * * * * 139 * * * * * 5479 * 3854 * * 26 55 4734 * 4087 87 * * 3097 1000 0 L 27 * * * 2327 * * * * * 454 * * * * * * 4734 4912 * * 27 1042 959 * 3847 104 * * 3097 2383 0 S 28 2066 * * * * * * * 4695 * * * * 676 * 3369 * * * * 28 334 2273 * 3897 100 * * 3304 2233 0 Q 29 * * * * * * * * * * * * * 461 * 1869 * * * * 29 283 2491 * 0 * * * 3397 1409 0 H 30 2029 * * 2054 * * 1094 * * * * * * 4456 * * * * * * 30 0 * * * * * * 3397 0 0 L 31 * * * * * * * * * 585 1584 * * * * * * * * * 31 0 * * * * * * 3397 0 0 L 32 * * * * * * * 3487 * 283 * * * * * * * 3495 * * 32 0 * * * * * * 3397 0 0 K 33 * * * * * 4970 * * 2449 * * 3538 * 988 2360 * * * * * 33 34 5423 * 3322 152 * * 3397 1000 0 L 34 * * * * * * 2182 * * 442 * * * * * 4519 * * * * 34 0 * * * * * * 3397 0 0 G 35 * * * * * 4095 * 3495 * 4519 * * * * * 2239 977 3487 * * 35 0 * * * * * * 3397 0 0 V 36 2298 * * * * * * 2332 * 4555 * * * * * 4506 * 967 * * 36 63 * 4555 * * * * 3382 0 0 W 37 * * * * * 4510 * * 2494 * * * * * * * * * 379 6658 37 0 * * * * 0 * 3304 0 1000 G 38 * * * * * 0 * * * * * * * * * * * * * * 38 0 * * * * * * 3643 0 0 I 39 5848 * * * * * 4026 615 * * * * * * * * 4286 2204 * * 39 0 * * * * * * 3643 0 0 K 40 * * * * * * * * 396 * * * * * 2059 * * * * * 40 0 * * * * * * 3643 0 0 Q 41 * * * * * * * 2499 * * * 1788 * 1085 * * 4012 * * * 41 0 * * * * * * 3643 0 0 L 42 4015 * * * * * * * * 92 * * * * * * * * * * 42 0 * * * * * * 3645 0 0 Q 43 * * * 2505 * * 4026 * * * * 3321 4015 896 3981 * * * * * 43 0 * * * * * * 3645 0 0 A 44 405 * * * * 4015 * * * * * * * * * * 2749 4876 * * 44 0 * * * * * * 3645 0 0 R 45 * * * * * * * * 3658 * * * * * 119 * * * * * 45 0 * * * * * * 3645 0 0 V 46 * * * * * * * 5604 * 2057 4927 * * * * 4032 * 632 * * 46 0 * * * * * * 3702 0 0 L 47 2313 * * * * * * * * 1027 * * * 5422 * 3786 2236 * * * 47 0 * * * * * * 3737 0 0 A 48 591 * * * * 3074 * * * * * * * * 2674 5512 4687 * * * 48 0 * * * * * * 3862 0 0 V 49 * 4471 * * * 6365 * 2199 * 1404 3593 * * * * 4971 * 2267 * 5343 49 0 * * * * * * 4068 0 0 E 50 * * * 312 * 3415 * * 4493 * * * * * 5343 * * * 4971 * 50 0 * * * * * * 4068 0 0 R 51 3772 * * 5860 * 3880 * * 1399 * * 5495 * * 1857 5632 4029 3593 * * 51 65 4971 6365 0 * * * 4068 1000 0 Y 52 * * * * 4859 * * 3207 * 3147 3586 * * * * * 3970 * * 743 52 0 * * * * * 0 4053 0 1000 L 53 * * * * * * * 3706 * 771 3530 * 3481 * * 4849 * 3416 * 4937 53 0 * * * * * 0 4307 0 1000 R 54 5423 * 2622 3332 * 4937 * * 1104 * * * * 3640 2868 * * * * * 54 0 * * * * * 0 4307 0 1000 D 55 * * 771 5206 * 3481 6217 4937 * * * 3493 * * 2622 * * * * * 55 0 * * * * * 0 4307 0 1000 Q 56 * * * * * * * * * * 2622 4937 * 483 * 3481 * * * * 56 0 * * * * * 0 4307 0 1000 Q 57 2360 * * 6628 * * * * * 5756 2622 * 4331 1393 * 3760 3481 5619 * * 57 0 * * * * * 0 4307 0 1000 L 58 3481 * * * 6701 * * 4156 3692 811 * * * 4858 4198 4937 * 3721 * * 58 0 * * * * * 0 4307 0 1000 L 59 * * * * * * * * * 529 5485 * 3481 * * 4937 * * * 2622 59 0 * * * * * 0 4307 0 1000 G 60 4475 * * * * 1753 3721 * 4247 * * 2611 * 3530 2861 3194 * 4937 * * 60 0 * * * * * 0 4307 0 1000 I 61 6604 * 3761 2345 4937 * * 1851 * 2980 7198 3535 * 3735 * 3457 5423 * * * 61 0 * * * * * 0 4307 0 1000 W 62 * * * * 5423 4937 * 5206 * 2228 * * * * * 4331 * 3530 835 7198 62 0 * * * * * 0 4307 0 1000 G 63 * * 2604 * * 259 * * * * * * * * * * * * * * 63 0 * * * * * 0 4380 0 1000 C 64 * 230 * * 5944 * * * * 2928 * * * * * * * * * * 64 106 3822 * 0 * * 0 4380 1263 1000 S 65 2172 * * 4261 * * 3822 * 4700 2928 * * * 5815 * 1420 * * 3414 * 65 0 * * * * * 0 4380 0 1000 G 66 * 4296 5774 * 3426 1578 3410 * * 4685 * 4110 * * * * * * 2053 3815 66 0 * * * * * 0 4379 0 1000 K 67 5474 * * * * * 4754 * 859 * 4599 3829 * 4879 3293 6894 4685 * * 3410 67 76 4280 * 0 * * 0 4379 1558 1000 L 68 6169 * * * * * 2755 6365 * 2379 * * * 1457 * 3441 2653 5774 * * 68 0 * * * * * 0 4379 0 1000 I 69 * * * * * * 2523 1541 * 5086 * * * 4288 * 3213 * 2166 * 3816 69 0 * * * * * 0 4378 0 1000 C 70 3457 612 * * * * 5086 * * 2931 * * * * * * * * * 3410 70 0 * * * * * 0 4378 0 1000 C 71 * 3311 * * * * 1147 * * * * * 3448 * 5296 * 2389 3858 * 3823 71 0 * * * * * 0 4472 0 1000 T 72 * 4959 * * * * 3023 * * 3550 * * * * * 4815 669 3395 * * 72 0 * * * * * 0 4550 0 1000 N 73 4146 2688 6937 * * * * 5251 * 3871 5878 2635 * * 6121 2410 1823 * 5476 * 73 101 * 3885 * * * 0 4550 0 1000 V 74 4906 2064 * * * * * * * * * * * * * 3005 * 730 * * 74 27 5771 * 0 * * 0 4398 1000 1601 P 75 4480 * * 3834 * * * * 4809 3016 * * 930 * * * 2315 * * * 75 19 * 6226 * * * 0 4398 0 1601 W 76 * * * * * 2586 * * * 4246 * * * * 2994 * * 4777 693 * 76 38 * 5280 * * * 0 4397 0 2034 N 77 3896 * * 3721 * 4228 * 5189 6094 * * 1137 * 4764 * 3539 2443 * * * 77 46 * 4989 * * * 0 4400 0 2092 S 78 5310 * 3186 3404 5929 * * 5282 4717 2328 * 3394 * 5351 5604 2412 4678 3965 * 4062 78 88 * 4077 * * 1615 570 4550 0 2275 S 79 3769 * * * * * * 4143 * * * * * 4801 * 1627 2210 2107 * 4009 79 70 * 4405 * * 2329 320 4704 0 2043 W 80 4399 5417 * * * 2518 * * * 6353 * * * 5567 3617 4702 * 4154 875 * 80 148 4137 4619 0 * 1222 807 4593 1615 2479 S 81 3964 * * 4276 * 2578 * 3579 * * * 3377 5890 * * 1396 5227 3139 * * 81 77 * 4269 * * 2533 274 4405 0 2129 N 82 * * 5233 3684 * 4434 * 4084 * 3394 * 1039 4659 * * 5811 * 3840 * 3619 82 176 3909 4370 2212 351 * 0 4375 1378 2247 K 83 4460 * 3535 * * * 4528 2744 2468 * * 2255 * 4291 3151 * 4174 3914 * * 83 99 5233 4657 0 * 863 1152 4495 1000 2248 S 84 5336 * 5431 * * * * * 4907 2656 * 2105 5577 * * 1361 3355 5663 * * 84 21 6118 * 3322 152 * 0 4578 1000 2162 L 85 5458 * 5160 6429 6419 * * 3807 4820 2247 5090 3945 * 2302 3712 4675 4994 * 3792 3436 85 78 5131 5391 1000 1000 466 1857 4578 1000 2162 D 86 * * 2313 3232 * 4047 * * 4224 * 4795 4617 * 4149 5153 4449 1841 4600 * 4294 86 67 5153 5844 0 * 397 2055 4509 1000 1586 E 87 4419 4824 3878 2929 * * * 4021 3965 * 4826 * 1679 6436 3170 4699 6357 5248 * 4448 87 0 * * * * 491 1795 4539 0 1193 I 88 5299 * 2842 5649 3233 5517 * 1067 * * * 2999 5451 5529 * * * * * 4647 88 0 * * * * 0 * 4561 0 1000 W 89 * * * * 3893 3491 * * 3910 * * * * 4603 * * * * 442 * 89 152 3497 6418 1539 609 * * 4721 1895 0 N 90 5475 * 1952 3540 * 2893 * * 5593 * * 2105 * 3871 4874 * 2920 * * 6543 90 0 * * * * 0 * 4553 0 1000 N 91 * * * * * * 4290 * 4663 * * 496 * * 3614 5550 3358 * * * 91 0 * * * * * * 4721 0 0 M 92 * 2475 4536 3875 * * * 4621 * 2913 1086 * * 5549 * * 4539 * * * 92 0 * * * * * * 4763 0 0 T 93 * 4930 4992 * * 4382 * * * 4829 * * 4481 * * * 308 * * * 93 0 * * * * * * 4763 0 0 W 94 * * * * * 3645 * * * 3961 * * * * * * * * 295 4621 94 98 3923 * 0 * * * 4763 1432 0 L 95 * 3103 * * * * 5392 4723 4308 3351 2523 * * 1258 * 4337 * * * 4966 95 0 * * * * * * 4706 0 0 Q 96 4337 * * 1557 * * 5516 * 5250 * * 3706 5725 1428 * 3800 5392 * * * 96 0 * * * * * * 4706 0 0 W 97 * * * * * 2753 * 4337 * * * * * * * * * * 318 * 97 0 * * * * * * 4706 0 0 D 98 * * 2001 1188 * * 4283 2754 * * * 4587 * 5250 * 5505 * * * 5517 98 0 * * * * * * 4706 0 0 K 99 * * * 2776 * * * * 1450 5155 5512 * * 4835 1540 * 4081 * * * 99 0 * * * * * * 4827 0 0 E 100 * * 5047 1792 * * 5576 * 1897 2895 * 5520 * 3330 3137 5498 * * * * 100 0 * * * * * * 4827 0 0 I 101 * * * * * * * 1062 * 2625 * * * * * * 3582 1861 * * 101 0 * * * * * * 4827 0 0 G 102 2828 * 2126 4173 * 4710 * 4323 5340 * * 3572 * 5368 3973 1786 * * * * 102 0 * * * * * * 4827 0 0 N 103 3991 * * 5232 6327 * * 4174 * * 5340 807 * 4473 5520 4966 3680 * * 3844 103 0 * * * * * * 4827 0 0 Y 104 5659 * 5391 * 4717 * 3686 6012 * 2020 * * * 4323 * 4853 4174 5576 6151 1309 104 0 * * * * * * 4827 0 0 T 105 * * 5340 2516 5047 * 3637 * * * 5155 * 6259 4172 * 4026 911 * * * 105 74 * 4323 * * * * 4827 0 0 Q 106 3895 * 2678 * * 1584 * * * * * 3628 * 2854 3962 3379 3980 * * * 106 0 * * * * 0 * 4674 0 1000 L 107 * * 5324 3999 * * 3836 3437 6100 3794 * 1674 * 3651 * * 2327 3812 * * 107 0 * * * * * * 4827 0 0 I 108 * * * * * * * 327 * 4473 * * * * * * * 5047 5512 3247 108 0 * * * * * * 4827 0 0 Y 109 * * 4332 4445 5158 * 5417 4174 * * * * * 4986 * 2230 2518 * * 1402 109 0 * * * * * * 4827 0 0 R 110 4361 * 2771 3576 * 3532 * 4630 2699 4473 * 2788 * 4390 5441 3248 6107 4062 * * 110 0 * * * * * * 4827 0 0 L 111 3757 4323 5382 4777 * * * 5368 * 800 4135 * * 6107 5079 4690 5498 * * 4174 111 0 * * * * * * 4827 0 0 I 112 * * * * * * * 2203 * 353 * * * * * * * * * * 112 0 * * * * * * 4827 0 0 E 113 5498 * * 1273 * 6498 * * 2283 * * 4893 * 2831 3941 * 5079 3668 * * 113 0 * * * * * * 4827 0 0 E 114 4390 * 2905 1389 * * * 4275 3791 5399 * 3122 * 3001 5574 * * 5128 * * 114 0 * * * * * * 4724 0 0 S 115 897 * * * * * * * * * * * * * 2896 1605 * * * * 115 49 4915 * 2000 415 * * 4724 1118 0 Q 116 4270 * * * * * 3246 * 2859 * * * * 863 4559 * * * * 3150 116 0 * * * * * * 4684 0 0 N 117 3692 * 3354 2927 * * * 2841 * 3698 * 2627 5868 5069 5348 6124 2450 4441 * * 117 0 * * * * * * 4683 0 0 Q 118 4889 * * 5066 * * 5407 * * 5354 * * * 633 5091 2674 4121 * * * 118 0 * * * * * * 4689 0 0 Q 119 * * * 2643 * * 5207 * 4063 * * * * 629 3234 * * * * * 119 0 * * * * * * 4462 0 0 E 120 * * 3803 772 * * * * 4415 5039 * 3665 * 2420 * * * * * * 120 0 * * * * * * 4462 0 0 K 121 * * * 3646 * * * * 1050 * * 3138 * 4403 2154 4953 5689 * * * 121 0 * * * * * * 4462 0 0 N 122 * * * * * * * * * 3764 5580 143 * * * * * * * * 122 0 * * * * * * 4115 0 0 E 123 * * * 1195 * * * * 2935 5580 3543 * * 3250 * * 4250 2573 * * 123 0 * * * * * * 3980 0 0 K 124 * * * * 3829 * 2444 * 1823 * * 4633 * 2285 3463 * * * * 2977 124 0 * * * * * * 3980 0 0 E 125 3720 * 1421 1214 * * * * 3062 * * * * * * * * * * * 125 0 * * * * * * 3906 0 0 L 126 * * * * * * * * * 80 * * * * * * * 4207 * * 126 0 * * * * * * 3837 0 0 L 127 * * * * * * * * * 0 * * * * * * * * * * 127 0 * * 0 * * * 2795 0 0 //