HHsearch 1.5 NAME c9oguB_ FAM FILE c9oguB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9oguB_.a3m DATE Sat Aug 30 11:55:38 2025 LENG 125 match states, 125 columns in multiple alignment FILT 61 out of 63 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.8 EVD 0.3939 -1.5294 SEQ >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHC >ss_conf 9202322467889999999999998866688865899999999999875235455531867540344652222134767500210551188899999976 6999999999999999999998709 >Consensus lgxlxaagsxmGxasxxltvQxxxllxgixtvwGikxLqaRvxalExylkdQxlLxxwGCxxkxichtxvpwnxswxnxsxxxiWxNmTWqqWekxIxnx txxIxxlLeeaqxQqekNxxxLxxL >c9oguB_ LGFLGAAGSTMGAASMTLTVQARNLLSGPGTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNY TQIIYGLLEESQNQQEKNEQDLLAL >UniRef50_Q699U6(515-660:840) Env protein n=3 Tax=Primate lentivirus group RepID=Q699U6_SIVCZ E=2e-23 s/c=0.75 id=49% cov=101% LGLLSAAGTAMGSAATALTLQSQTLLAGIVqqqqklleaveaqqhllglTVWGVKNLNARLTALETYLRDQAIMSNWGCAFKQICHTAVTWQQACGNnsR CPTPQWENMTWHTWERQVDNLTDHIDNLLREAQEQQEKNVHDLTKL >UniRef50_P22380(583-716:821) Transmembrane protein gp41 n=133 Tax=Simian immunodeficiency virus RepID=ENV_SIVGB E=5e-14 s/c=0.59 id=38% cov=93% ------AGSAMGSVSVALTVQSQSLVTGiveqqkqllklieqqsellKLTIWGVKNLQTRLTSLENYIKDQALLSQWGCSWAQVCHTSV----EWTNTSI TPNWTSETWKEWETRTDYLQQNITEMLKQAYDREQRNTYELQKL >UniRef50_Q9DKV4(563-706:849) Envelope n=25 Tax=Ovine/caprine lentivirus group RepID=Q9DKV4_CAEV E=1e-24 s/c=0.79 id=26% cov=101% MAIVAAAGASLGVAnaiqqsytrdavqtlANATAVQQQVLEASYAMIQhvakGIRILEARVARMEVMMDRMMLYQEVDCWHYHQYCVTSTRADIVNYINW TRFKDNCTWQEWEREISAHEGNITILLKESARITQLAQQKVQRI >UniRef50_Q3Y655(5-106:143) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q3Y655_9HIV1 E=9e-12 s/c=0.70 id=46% cov=62% ------------------------------------------SALERYLKDQQLLGIWGCSGNSSAPLLCLGTLV-GVINLSMIFGRTCLgCSGIEKLSN YTNTIYKLLEDSQIQQDNNEK----- >UniRef50_Q99FH6(518-659:837) Envelope glycoprotein n=1 Tax=Simian immunodeficiency virus RepID=Q99FH6_SIVCZ E=6e-32 s/c=0.97 id=46% cov=98% LALLSGAGAAMGSASVALTIQAQSLNGRAsassnrmllklvetqsallqLTVWGVKNLQVRVATIEGYLEEQAKLASIGCANMQICRTIVPWNKTWGE-- -EDPWQNMTWKQWHERVRNYTDIIEADLVEAYDLQEENEKKLAEL >UniRef50_Q64G66(29-98:98) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G66_9HIV1 E=3e-15 s/c=1.19 id=45% cov=57% -----------------------------------------VLAIKKYLKNQPLLGISGCSCKTHLHHCCTLGLYWSLQSQKKIQNHITYMQWNKKISNY TGTIYKLLNES-------------- >UniRef50_Q64G54(17-108:139) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G54_9HIV1 E=8e-14 s/c=0.85 id=34% cov=74% ---------------------------------GIKQLQTRVLALGKIPKGSTAPRNLGLLWKTHLHHCCAVESSWSNKSQGAIWvTRLGWSAIEKLIIT QT-HYTGCLKNRKTSRNKLKRDLLAL >UniRef50_Q9YP75(1-83:278) Envelope glycoprotein (Fragment) n=1 Tax=Simian immunodeficiency virus RepID=Q9YP75_SIVCZ E=8e-20 s/c=1.18 id=38% cov=67% -------------------------------------LNARVTALEKYLEDQARLNIWGCAFRQVCHTTVPWKF-----NNTPDWENMTWQEWEKSIASL EGNISKTLAQAHDHEQNTLDQYQKL >UniRef50_Q64FP6(3-114:144) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q64FP6_9HIV1 E=4e-06 s/c=0.47 id=48% cov=32% ------------------------------------------------------------------------------NPLNEIWNNMTWQPWDKEISNF HTDIYSLIEDRRTSRKR-------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * 3679 * 445 2729 * * * * * * 4776 * * 1 0 * * * * * * 2779 0 0 G 2 1992 * * * * 418 * * * * * * * * * * * * * * 2 0 * * * * * * 2779 0 0 F 3 * * * * 685 * * 2729 * 2777 * * * * * * * 3620 * * 3 0 * * * * * * 2779 0 0 L 4 * * * * * * * * * 236 * * * * * * * 2729 * * 4 0 * * * * * * 2779 0 0 G 5 2032 * * * * 1707 * * * * * * * * * 1154 * * * * 5 0 * * * * * * 2779 0 0 A 6 473 * * * * 3966 * * * 4078 * * * * * * 2678 * * * 6 0 * * * * * * 2779 0 0 A 7 0 * * * * * * * * * * * * * * * * * * * 7 0 * * * * * * 2811 0 0 G 8 * * * * * 0 * * * * * * * * * * * * * * 8 0 * * * * * * 2850 0 0 S 9 2237 * * * * 5046 * * * * * * * * * 706 2788 * * * 9 0 * * * * * * 2922 0 0 T 10 1309 * * * * * * * * * * * * * * 2514 1409 4480 * * 10 0 * * * * * * 2922 0 0 M 11 * * * * * 4568 * * * 2947 272 * * * * * * * * * 11 0 * * * * * * 2991 0 0 G 12 * * * * * 42 * * * * * * * * * 5138 * * * * 12 0 * * * * * * 2991 0 0 A 13 824 * * * * * * * * 4544 * * * 4568 * 3043 3336 2947 * * 13 0 * * * * * * 2991 0 0 A 14 616 * * * * * * * * 4568 * * * * 4538 * * 1931 * * 14 200 2947 * 3907 100 * * 2991 1000 0 S 15 1537 * * * * 4535 * * * 4568 * * * * * 811 * * * * 15 0 * * * * * * 2991 0 0 M 16 * * * * * * * 3278 * 4578 4617 2947 * * * 4568 1298 2084 * * 16 0 * * * * * * 2991 0 0 T 17 886 * * * * 3569 * 3737 * * * * * * * * 2104 3899 * * 17 0 * * * * * * 3024 0 0 L 18 * * * * * * * 4597 * 270 * * * * * * 2948 * * * 18 0 * * * * * * 3024 0 0 T 19 2303 * * 6628 * * * * * * * * * * * 4301 524 4597 * * 19 0 * * * * * * 3024 0 0 V 20 2874 * * * * 5649 * 3204 * 4772 * * * 4606 * * * 605 * * 20 0 * * * * * * 3022 0 0 Q 21 * * * * * * * * * * * * * 54 4764 * * * * * 21 0 * * * * * * 3022 0 0 A 22 1699 * * * * * * * * * * * * 2483 * 1261 3384 * * * 22 0 * * * * * * 3022 0 0 R 23 * * * * * * 3911 * * * * 4606 * 1384 1065 4999 * * * * 23 0 * * * * * * 3022 0 0 N 24 4603 * 4582 * * 5345 2685 * * 6639 * 3476 * 2720 * 2385 2589 2968 * * 24 0 * * * * * * 3022 0 0 L 25 * * * * * * * * * 154 * * * * * 5429 * 3681 * * 25 0 * * * * * * 3022 0 0 L 26 * * * 2968 * * * * * 352 * 4221 * * * * * 4833 * * 26 0 * * * * * * 3022 0 0 S 27 1113 * * * * 4520 5091 * 3911 * * * * 4603 4606 1832 4833 * * * 27 0 * * * * * * 3022 0 0 G 28 4606 * * * * 363 * * * * * * * * 4221 2968 * * * * 28 219 2828 * 4119 85 * * 3022 1853 0 P 29 4520 * * * * * * 540 3830 * * * 5684 * 4603 6639 * * * 2968 29 218 2835 * 3912 99 * * 3022 1811 0 G 30 3024 * * * * 4082 * * * 1937 * * * * * * * 844 * * 30 1208 844 6610 4248 78 * * 3041 2296 0 T 31 * * * * * * * * * * 2980 * * * * 2130 633 * * * 31 43 5075 * 3000 193 * 0 3021 1000 1000 V 32 5110 * * * * * * 1400 * * * * * * * * * 756 * * 32 0 * * * * * 0 3010 0 1000 W 33 * * * * * * * * * * * * * 2980 * * * * 211 6717 33 195 2980 * 2000 415 0 * 3021 1000 1000 G 34 * * * * * 0 * * * * * * * * * * * * * * 34 0 * * * * * * 3348 0 0 I 35 5741 * * * * * 3832 704 * * * * * * * * 4033 2081 * * 35 0 * * * * * * 3348 0 0 K 36 * * * * * * * * 346 * * * * * 2229 * * * * * 36 0 * * * * * * 3348 0 0 Q 37 * * * * * * * 2741 * * * 1657 * 907 * * * * * * 37 0 * * * * * * 3348 0 0 L 38 * * * * * * * * * 0 * * * * * * * * * * 38 0 * * * * * * 3349 0 0 Q 39 * * * 2748 * * 3832 * * * * 3302 * 721 3775 * * * * * 39 0 * * * * * * 3349 0 0 A 40 341 * * * * * * * * * * * * * * * 2546 4671 * * 40 0 * * * * * * 3349 0 0 R 41 * * * * * * * * 5396 * * * * * 35 * * * * * 41 0 * * * * * * 3349 0 0 V 42 * * * * * * * 5265 * 1982 4761 * * * * * * 548 * * 42 0 * * * * * * 3385 0 0 L 43 2461 * * * * * * * * 1017 * * * 5319 * 3863 2117 * * * 43 0 * * * * * * 3413 0 0 A 44 502 * * * * 3673 * * * * * * * * 2797 5392 4387 * * * 44 20 * 6189 * * * * 3410 0 0 V 45 * * * * * * * 2095 * 1292 3647 * * * * 5412 * 2231 * 4602 45 0 * * * * * 0 3617 0 1000 E 46 * * * 225 * 4557 * * 4641 * * * * * 4671 * * * 5479 * 46 0 * * * * * 0 3717 0 1000 R 47 3954 * * 5834 * 3643 * * 1479 * * 5361 * * 1760 6545 3826 3676 * * 47 33 5479 * 0 * * 0 3717 1000 1000 Y 48 * * * * 4730 * * 3613 * 3179 3676 * * * * * 4005 * * 668 48 0 * * * * * 0 3717 0 1000 L 49 * * * * * * * 3541 * 747 3606 * 3549 * * 5430 * 3554 * 4555 49 0 * * * * * 0 4096 0 1000 R 50 5028 * 2743 3180 * 4555 * * 1161 * * * * 3540 2898 * * * * * 50 0 * * * * * 0 4096 0 1000 D 51 * * 767 4912 * 3549 6254 4555 * * * 3494 * * 2743 * * * * * 51 0 * * * * * 0 4096 0 1000 Q 52 * * * * * * * * * * 2743 4555 * 469 * 3549 * * * * 52 0 * * * * * 0 4096 0 1000 Q 53 2288 * * 6342 * * * * * 5605 2743 * 4500 1430 * 3456 3549 5568 * * 53 0 * * * * * 0 4096 0 1000 L 54 3549 * * * 6657 * * 4092 3582 845 * * * 4755 4086 4555 * 3895 * * 54 0 * * * * * 0 4096 0 1000 L 55 * * * * * * * * * 519 5321 * 3549 * * 4555 * * * 2743 55 0 * * * * * 0 4096 0 1000 G 56 4290 * * * * 1959 3895 * 4214 * * 2501 * 3606 2740 3065 * 4555 * * 56 0 * * * * * 0 4096 0 1000 I 57 6354 * 3249 2462 4555 * * 2078 * 2881 6793 3846 * 3683 * 3337 5028 * * * 57 0 * * * * * 0 4096 0 1000 W 58 * * * * 5028 4555 * 4912 * 2205 * * * * * 4500 * 3606 885 6793 58 0 * * * * 0 * 4096 0 1000 G 59 * * 2716 * * 238 * * * * * * * * * * * * * * 59 0 * * * * * * 4219 0 0 C 60 * 266 * * 5875 7016 * * * 2800 * * * * * * * * * * 60 0 * * * * * * 4219 0 0 S 61 2055 * * 4238 * * * * 4522 2800 * * * 5830 * 1517 * * 2716 * 61 0 * * * * * * 4219 0 0 G 62 * 4194 5716 * 3297 1607 2901 * * 4548 * 3943 * * * * * * 1973 * 62 14 * 6672 * * * * 4132 0 0 K 63 5274 * * * * * * * 792 * 4484 4329 * * 3115 6655 4544 * * 2900 63 49 4894 * 0 * * 0 4129 1000 1000 L 64 6032 * * * * * 2794 6232 * 2393 * * * 1406 * 4329 2391 5711 * * 64 0 * * * * * 0 4129 0 1000 I 65 * * * * * * 2187 1506 * 4888 * * * 3773 * 3822 * 1996 * * 65 0 * * * * * 0 4138 0 1000 C 66 3706 744 * * * * 4888 * * 2655 * * * * * * * * * 2901 66 0 * * * * * 0 4138 0 1000 C 67 * 2836 * * * * 959 * * * * * 3718 * 5147 * 2620 * * 3669 67 0 * * * * * 0 4222 0 1000 T 68 * 4787 * * * * 2781 * * 3888 * * * * * 4521 791 2951 * * 68 0 * * * * * 0 4309 0 1000 N 69 3926 2460 6971 * * * * 5096 * 4448 5526 2894 * * 5979 2885 1583 * 5151 * 69 0 * * * * * 0 4309 0 1000 V 70 4787 2052 * * * * * * * * * * * * * 2951 * 753 * * 70 31 * 5578 * * * 0 4309 0 1000 P 71 3756 * * 4065 * * * * 4623 3587 * * 935 * * * 2188 * * * 71 30 5584 * 0 * * 0 4294 1000 1388 W 72 * * * * * 2697 * * * 4081 * * * * 2815 * * 4470 738 * 72 54 * 4756 * * * 0 4294 0 1388 N 73 3937 * * 3961 * 3898 * 5059 5919 * * 1170 * 4676 * 3461 2454 * * * 73 30 * 5622 * * * 0 4367 0 1683 S 74 5188 * 3116 3314 5824 * * 5160 4628 2517 * 3500 * 4969 5282 2519 4643 3869 * 3900 74 80 * 4205 * * 2338 318 4386 0 1857 S 75 3498 * * 5178 * * * 3908 * * * * * 4804 * 1510 2782 2197 * 3904 75 133 * 3501 * * 3130 175 4399 0 2077 W 76 4046 4830 * * * 3186 * * * * * * * 4775 * 4652 * 3858 623 * 76 138 4499 4410 0 * 1024 976 4131 1462 2448 S 77 4704 * * 4738 * 2140 * 3499 * * * 2855 4817 * * 1772 3430 4333 * * 77 0 * * * * 2542 272 4331 0 2179 N 78 * * * 4289 * 3875 * * * 4290 * 887 3842 * * * * 3066 * 3328 78 231 3341 4337 2010 412 * 0 4164 1621 2110 R 79 4558 * 3856 4807 * * 4459 2423 2508 * * 3748 * 4194 2601 4485 4122 4350 * * 79 158 5260 3681 0 * 414 2004 4296 1000 2335 N 80 * 4957 4392 * * * * * 4543 3609 * 1733 5316 * * 1555 2953 * * * 80 52 4833 * 2464 288 * 0 4328 1255 2156 L 81 5387 * 5140 4831 6270 * * 3699 4653 1865 5058 5470 4957 2323 * * 4906 * 3475 3316 81 36 * 5331 * * 589 1577 4328 0 2156 S 82 * * 2405 3166 * 3889 * * 3998 * * 4343 * 3517 4543 3353 1774 * * * 82 63 4543 * 0 * 1366 708 4370 1000 1608 E 83 4151 4735 3402 2718 * * * * 3725 * 4273 * 1624 6192 3530 4489 6187 * * 4340 83 0 * * * * * 0 4385 0 1346 I 84 5223 * 2640 * 3530 5411 * 829 * * * 3571 5246 5079 * * * * * * 84 0 * * * * 637 1485 4385 0 1346 W 85 * * * * 3525 * * * 3686 * * * * 4357 * * * * 346 * 85 104 4162 6187 0 * 0 * 4449 1000 1000 D 86 5518 * 2045 3278 * 2622 * * 5418 * * 1960 * 3706 * * 3299 * * 6414 86 0 * * * * 0 * 4492 0 1000 N 87 * * * * * * 4173 * 4430 * * 418 * * 3275 5366 5499 * * * 87 0 * * * * * * 4484 0 0 M 88 * 3671 4520 3766 * * * 4447 * 2743 928 * * 5199 * * 4145 * * * 88 0 * * * * * * 4518 0 0 T 89 * 4405 4546 * * 4188 * * * * * * * * * * 226 * * * 89 0 * * * * * * 4518 0 0 W 90 * * * * * * * * * 3474 * * * * * * * * 211 4447 90 140 3431 * 0 * * * 4518 1432 0 L 91 * 4314 * * * * 5097 4575 4153 3196 2391 * * 1245 * 4129 * * * 4524 91 0 * * * * * * 4458 0 0 Q 92 4129 * * 1474 * * 5441 * 5283 * * 4524 5450 1365 * 4314 5097 * * * 92 0 * * * * * * 4458 0 0 W 93 * * * * * 3415 * 4129 * * * * * * * * * * 236 * 93 0 * * * * * * 4458 0 0 D 94 * * 1840 1130 * * 4136 3433 * * * 4504 * 5316 * 5481 * * * 5446 94 0 * * * * * * 4412 0 0 K 95 * * * 3069 * * * * 1504 4958 5332 * * 4828 1413 * 4046 * * * 95 0 * * * * * * 4423 0 0 E 96 * * 5030 1751 * * 5601 * 2209 2776 * 5288 * 3111 3026 5304 * * * * 96 0 * * * * * * 4423 0 0 I 97 * * * * * * * 982 * 3322 * * * * * * 3479 1718 * * 97 0 * * * * * * 4423 0 0 S 98 3438 * 2012 4505 * 4693 * 4080 5039 * * 3535 * 5361 3819 1709 * * * * 98 0 * * * * * * 4423 0 0 N 99 3988 * * 5180 6235 * * * * * 5039 718 * 4933 5288 4799 3453 * * 3792 99 0 * * * * * * 4423 0 0 Y 100 5443 * 5408 * 4467 * 3940 5674 * 1900 * * * 4080 * 4810 * 5601 6096 1233 100 0 * * * * * * 4423 0 0 T 101 * * 4905 2531 5053 * 4985 * * * 5099 * 6204 3913 * 3868 851 * * * 101 97 * 3948 * * * * 4127 0 0 Q 102 3695 * 2497 * * 1527 * * * * * 3871 * 2671 * 3299 3803 * * * 102 0 * * * * 0 * 3882 0 1000 I 103 * * 4985 3841 * * 3584 3222 6120 3840 * 1624 * 5462 * * 2375 3573 * * 103 0 * * * * * * 4127 0 0 I 104 * * * * * * * 236 * 5004 * * * * * * * 5053 5343 3948 104 0 * * * * * * 4127 0 0 Y 105 * * 4247 4334 4984 * 5473 * * * * * * 4987 * 2234 2311 * * 1330 105 0 * * * * * * 4127 0 0 G 106 4100 * 2710 3496 * 3173 * 4546 2745 5004 * 3450 * 4369 5817 3074 5433 3905 * * 106 0 * * * * * * 4127 0 0 L 107 3600 3948 5325 4647 * * * 5462 * 762 4050 * * 6003 4875 4664 5250 * * * 107 0 * * * * * * 4127 0 0 L 108 * * * * * * * 2085 * 388 * * * * * * * * * * 108 0 * * * * * * 4127 0 0 E 109 5250 * * 1203 * 6502 * * 2580 * * 4808 * 2647 4329 * 4875 3612 * * 109 0 * * * * * * 4127 0 0 E 110 4310 * 2964 1304 * * * 4132 3583 5519 * 3755 * 2969 5336 * * 5183 * * 110 0 * * * * * * 4127 0 0 S 111 841 * * * * * * * * * * * * * 3371 1536 * * * * 111 0 * * * * * * 4127 0 0 Q 112 3692 * * * * * 3102 * 3364 * * * * 902 4406 * * * * 2982 112 0 * * * * * * 4097 0 0 N 113 3639 * 3181 2913 * * * 2936 * 5032 * 2452 5825 4852 4027 5988 2763 4155 * * 113 0 * * * * * * 4094 0 0 Q 114 * * * 4757 * * 4805 4723 * 5320 * * * 634 5118 3016 3885 * * * 114 0 * * * * * * 4215 0 0 Q 115 * * * 2315 * * 5047 * * * * * * 720 3105 * 4452 * * * 115 0 * * * * * * 4072 0 0 E 116 * * 4515 829 * * * * 4372 4461 * 3530 * 2230 * * * * * * 116 0 * * * * * * 4072 0 0 K 117 * * * 3361 * * * * 1296 4452 * 3250 * 4352 2079 4627 5746 * * * 117 0 * * * * * * 4072 0 0 N 118 4396 * * * * * * * * 3634 6017 297 * * * * 4562 * * * 118 0 * * * * * * 4051 0 0 E 119 * * * 1516 * * * * 2900 3552 3711 * * 2669 * * 4526 2699 * * 119 0 * * * * * * 4051 0 0 Q 120 * * 3884 * 3983 * 2575 * 2027 * * 4378 * 2329 3360 * * * * 3166 120 0 * * * * * * 4051 0 0 D 121 3355 * 1623 1507 * * * * 2468 * * * * 4469 * * * * * * 121 0 * * * * * * 3865 0 0 L 122 * * * * 4359 * * * * 346 * * * * * * * 3415 * 3824 122 0 * * * * * * 3865 0 0 L 123 5112 * * 5037 * * * * 4359 1204 * * * 1295 * * 5275 * * 5340 123 0 * * * * * * 3865 0 0 A 124 2226 * * 2129 * * * * 1657 * * * * 3955 3301 3740 * * * * 124 0 * * * * * * 3797 0 0 L 125 * * * * * * * 3912 * 99 * * * * * * * * * * 125 0 * * 0 * * * 3733 0 0 //