HHsearch 1.5 NAME c9ofpA_ FAM FILE c9ofpA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9ofpA_.a3m DATE Sat Dec 6 13:15:13 2025 LENG 1012 match states, 1012 columns in multiple alignment FILT 23 out of 25 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.6 EVD 0.3135 -9.8918 SEQ >ss_pred CCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEEEECCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCEECCCCCEEEEEEECCCCEECCCE EEEEEECCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEEEECCCCCCEEEEECCCCCEEEEEEEEEEEEEEEEEEECCCCCEEEEEEEEEECCCCEEEE EEEEEEEEEEEEECCEEEEEEECCCCHHHEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECC CCCCCEEEECCCEEEEEEEEEEEECCCCCCCCCCCCCCCHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCEEEEEEECCCEEEEEECCCC CCCCCCCCEECCEEEEEECCEEEEEEEEECCCEEECCEEEEECCCEEEEEEECCCCEEEEEECCCCCCEEEEECCCEEEEEEECCCCCCCCCCEEECCEE EEECCCCCCCCCCCEECCCEEEECCCCEEEEEEEECCCCCCCCEEECCEEECCCEEEEEEEEEEEEECCCEEEEECCEEECCCHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHEEEEECCCCCCEEECCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHCCEEEECCCCCCCHHHHHHHCCCCEEEEEEEEEECCE EEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE EEEEECCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCEEEEEECCEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEECCHHHCCCCCCCC CCHHHHHHHHCC >ss_conf 9765542244146874279864220487527851576699750655899986113455666316874566641010104553028997520110001435 8899614529999945766431022102676760588997210477402576517864047999974249990253015465017999965136641799 9832116999985674777773476332224310267899960466654321222147665523444179999985224556756566640476787103 4764035330542787864233420321143268765326542588145379973554687325578886530352104479999954963775313510 0224553000511458863357899996112103230786515740589982467627999436776318997786046786323135675311103305 8724666533645010133057206743567653036665463475023415420467887899864362599622045088389999999998998989 9998750123222001013441233320001022762104323666777655454204442210125751774210458866169510112112113424 7626767888988889999998742542000121489889875050102278889889999999999999898775432223334555667799999999 9999754899999999985101357888999999886555420145555557899999999999999999999999999999997612110153468758 9997024988189999975478659999854565418435785277078995199799964121154067644469982005899855555524237873 004768876249 >Consensus cxgxxxxvfxxxxxgxipxxfxfxnwfxltnxstxvxgxxxsxqpxxxxclxxvxxxxxxxxxxxfnxxxxxxcxgxxxxxxxdxxrxnxnxxxxxxxxx xxxxtxxxxxxfxcxxxxxxxxxxxipxxxxxxxxycfxxxxxxxxxxxxfxgxLPxxvxexxxxxxgxxyxnGxxxxxxxxixxvxxxxtxxxxxxxxi axxnxtdvLvxvxntsIqxviYCDSpxnxLkCQqxtFnlxDGFYsxxxxxxxxxpxTfVtlPxxxxxsxinlxVxxsxxxxsxxcxxxxxxxxxxxxxxx sxsxxxxCVxxxxFsxxxxxxxxxsxxsyxxxxxxCpFslxxvNNylxFnsfCxSlxpxxGgCxxxvxatxxxxxxxxxxslYVtxxxGxxItgvpxPxx gvxDxSnixtdvCvxYnIYGitGtGVIxxsNxsylxglxytSxsGxLlgFknxttgxiYsVtPCxxxxQxvVxxxsxvGaxtsxnxtxxxxxxxixxxxx xxxsxxxxnctxpxxxyxxxxxcxdgsixxvxxxxxxxxxxxxxxxxnvxIPxnftxsvxxEyiQxxxxkvxIDCxxYVCxxxxxCxxlLxqYgsxCxxI exaLxxxxxlxxxxxxxxxxxxxxxxxlxxxxxfgxxnxsxxLxxxxxxxxxxxxRSxIEDLLFxKVxtsglGtvDxdYxxCtxgxxiaDLxCaQyyNGi mVLPgvxdxxxmamYTxsLxgxmxxggxTaaaaIPFaxxvqxRlNylalxxxvLxeNQkilAxsFNxAixxIxxxfxxvnxaixqtsxxxxTvaxAlxKi QxVVNxqxxaLxxLxxqLxxnFgAISssixdIyxRLDxleAdaQVDRLItGRLxaLnafVtqxlxxxxevrxsrxLAxxKiNECVKSQSxRxgFCGnGtH ixSlxqxAPxGixFxHxxlvPtxxxxvxaxxGlCvxxxxgxvxkxxxxvxxxxxxxxxiTxrxxyxPrxxtxxdxvxxxsCxvxxxnxtxxxlxxxxPxx xDxxxxxxxxxx >c9ofpA_ CVGHSENVFAVESGGYIPSNFAFNNWFLLTNTSSVVDGVVRSFQPLLLNCLWSVSGSQFTTGFVYFNGTGRGACKGFYSNASSDVIRYNINFEENLRRGT ILFKTSYGAVVFYCTNNTLVSGDAHIPSGTVLGNFYCFVNTTIGNETTSAFVGALPKTVREFVISRTGHFYINGYRYFSLGDVEAVNFNVTNAATTVCTV ALASYADVLVNVSQTAIANIIYCNSVINRLRCDQLSFDVPDGFYSTSPIQPVELPVSIVSLPVYHKHTFIVLYVNFEHRRGPGKCYNCRPAVINITLANF NETKGPLCVDTSHFTTQFVDNVKLARWSASINTGNCPFSFGKVNNFVKFGSVCFSLKDIPGGCAMPIMANLVNSKSHNIGSLYVSWSDGDVITGVPKPVE GVSSFMNVTLNKCTKYNIYDVSGVGVIRISNDTFLNGITYTSTSGNLLGFKDVTNGTIYSITPCNPPDQLVVYQQAVVGAMLSENFTSYGFSNVVEMPKF FYASNGTYNCTDAVLTYSSFGVCADGSIIAVQPRNVSYDSVSAIVTANLSIPFNWTTSVQVEYLQITSTPIVVDCSTYVCNGNVRCVELLKQYTSACKTI EDALRNSAMLESADVSEMLTFDKKAFTLANVSSFGDYNLSSVIPSLPRSGSRVAGRSAIEDILFSKLVTSGLGTVDADYKKCTKGLSIADLACAQYYNGI MVLPGVADAERMAMYTGSLIGGIALGGLTSAASIPFSLAIQSRLNYVALQTDVLQENQRILAASFNKAMTNIVDAFTGVNDAITQTSQALQTVATALNKI QDVVNQQGNSLNHLTSQLRQNFQAISSSIQAIYDRLDPPQADQQVDRLITGRLAALNVFVSHTLTKYTEVRASRQLAQQKVNECVKSQSKRYGFCGNGTH IFSLVNAAPEGLVFLHTVLLPTQYKDVEAWSGLCVDGINGYVLRQPNLALYKEGNYYRITSRIMFEPRIPTIADFVQIENCNVTFVNISRSELQTIVPEY IDVNKTLQELSY >UniRef50_B3FHU5(161-1060:1226) Spike n=17 Tax=Coronavirinae RepID=B3FHU5_CVTKE E=0 s/c=0.98 id=35% cov=82% ---------------------------------------------------------------------------------------------------- ----------------------------------------------------------VKSVIFIATGDIFVNGvlMGFYNLNFTQTLTIWLAQCVGTMK VVILRN-SNALVHFSAGNVVAFEPCtgDTTINKLRCAYQQFNFSTGFYDIDTFVPVTSNITYLPYPDLKDNTgqeVCDFYVALkgDHVIYNQSCVDSKYP FFKLKCNNtYSWDNDKLCILGSEIYVPGYNVYTNTQHSYAGTIPNYPtcsskgLSLENIYNNIGFNRFCvtklLTTRDISSITQYTcvYVVSVEGFDSYN QGIVYsyvgVNFDFGTAMYSVkTAPMQFIY------TEQCHKYNIYNIRGVGqilnVTGKDNTTLVDGGLVITSGSGLLAFRN--NGSLFSVQPCRTvST QAVIVNGSFVGlfvpasCWLADQFNLGNHTEYVDggclisnktISRKRRSTNAVYtgECTGLFAAMGTSCIYSNGTVLnRTLPQPSVQTSVQPLlgVVAN VSIPKELTLAVTTEYLQTRYQKVTIDCAKYVCGDSTRCRTLLQQYGSFCQSVNAILsgvnenEDNGLLQYAEaINTGYTLN---FTGYNVSNLGGFDLSL VLPK-NLTLAQNQGRSTIEDLLFDKVVTLGVSEVDQNYDKCiaSRGGSftnLADLTCAQFYNGVMVLPGVVDPGLMAVYTGSLIGGMALGGITAAASIPF ATQIQARVNYLALTQSVLLDNQNLIANSFNKALKGIQSALDTVSQGFVEVARGFESVTVALNKVQDVVNTHSDILNKLMAQLSVNFGAVSSSLNEIYLKL DQINADAQVDRLITGRLTALSTYVASLQLAAYKADQSRRLALQKVEECVKSQSMRYGFCGNGSHVLTIPQSAPNGIFFIHYTYQPTSYVTIEAVPGLCVt tpSGKYGVMPKTGSGIIFRQNDTFFVTSTQLYEPKLLSYSEVVNLTSCEANYYNVSESEtpFQPALPNFDD---------- >UniRef50_P05135(167-1017:1163) Spike protein S2 n=1237 Tax=Avian coronavirus RepID=SPIKE_IBV6 E=1e-140 s/c=0.59 id=34% cov=74% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- -----------------QDVILCDgSPTGLLACQYNTGNFSDGFYP--FTNSSLVKEKFIVYRESSVNTTLELT-NFTFSNVSNATPNTGGVQTIQLYQT ITAQSGYYNLN---FSFLSSFIYKASDYMYGSYHPSCKFRLETINNGLWFNSLSVSLgyGPIQGGCKQSVFANRAtccYAYSYNGPSLckgvyrgeltks fecgllvFVTKTDGSRIQTRNEPfTLTQHNYNNITLDRCVEYNIYGRVGQGFITNVtnyaiNYNYLAdggmAILDTSGAIDIFVVQGEYGLNYYKVNPCe DVNQQFVVSGGKLVGILTSRNETgsqplENQFYIKIINGTRRSRRSITGNVTNcPYVTYGKFCIKPDGSISTIVPKELEHFVAPLLnVTENVLIPDSFNL TVTDEYIQTRMDKVQINCLQYVCGNSLECRKLFQQYGPVCDNILSVVNSVGQKEDMELLYFYSSTKpsgfNTPVLSNVST-GEFNISLLLTPP----SSA SGRSFIEDLLFTSVESVGLPT-DDAYKKCTAGplGFLKDLACAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGGITSAGAIPFATQLQARINHLGITQ SLLFKNQEKIAASFNKAIGHMQEGFRSTSLALQQ--------------IQDVVNKQSSILTETMASLNKNFGAISSVLQDIYQQLDSIQADAQVDRIITG RLSSLSVLASAKQAEYYRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHFTYTPESFVNVTAIVGFCVNpanaSQYAIVPANGR GIFIQVNGSYYITARDMYMPRDITAGDIVTLTSCQANYVSV------------------------ >UniRef50_Q8BB25(530-1233:1349) Spike protein S2 n=85 Tax=Betacoronavirus RepID=SPIKE_CVP67 E=1e-112 s/c=0.58 id=35% cov=57% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- -------ITTDVCVNYDLYGITGQGILIEVNATYYNSwqnLLYDS-SGNLYGFRDYLSNRTFLIRSCYSGRVSAVFhaNSSEPALMFRNLKCSHVFNNTi lrqIQLVNYFdsylgcvvnaYNNTASAVSTCDLTVGSGYCVdyvtalrsrrsfttgyrFTNFEPFAANLVNDSIEPVGGLY--EIQIPSEFTIGNLEEFI QTRSPKVTIDCATFVCGDYAACRQQLAEYGSFCENINAILtEVNELLDTTQLQvanslmNGVTLSTKIKDGINF-NVDDINFSPVLGCLGSECNRASTRS AIEDLLFDKVKLSDVGFV-QAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSENQISGYTLAATAASLFPPWTAAAGVPFYLNVQYRINGLGVTMDVLSQN QKLIASAFNNALDAIQEGFDATN--------------SALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQEILSRLDALEAKAQIDRLINGRLTALN AYVSQQLSDSTLVKFSAAQAIEKVNECVKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDIGISPKSGYFI--NVNNSW MFTGSSYYYPEPITQNNVVVMSTCAVNYTKAPDLMLNTSTPNLPDFKEEL----- >UniRef50_P59594(408-1135:1255) Spike protein S2 n=151 Tax=Betacoronavirus RepID=SPIKE_CVHSA E=1e-106 s/c=0.53 id=32% cov=58% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- -----------------------------------------------------------------------------------------------PATVC GPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTdSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTaih adqlTPAWRIYStgnnvfqtqagcligaehvDTSYECDIPIgagicASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNntIAIPTNFSISITTEVMPV SMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILP----DPLKPTKRSFIEDLLFNK VTLADAGFMKQ-YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTfgagAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIA NQFNKAISQIQ--------------ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQ QLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGK-AYFPREGVFVF--NGTSWFITQR NFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPE------------- >UniRef50_A8JP00(35-1003:1128) Spike glycoprotein n=3 Tax=Rhinolophus bat coronavirus HKU2 RepID=A8JP00_9ALPC E=5e-83 s/c=0.32 id=29% cov=73% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------AVTRYSYCaDGFVNGLQCKLRLFDIPPGVYSNSEVEYPVALYTVV-----HNMSVCPQRP--ESYCGSNYCPFKRVVFSNCVVNY TSWTSGLLRDYQHLVLPNGKFNPFTECNGLNRIVDDCVTGFVlRVGRGTAVNRTVITPYLKPNEC-------FGWSWNDYQDSIYDWWIADFVSTGA--- FVCEKNPDAPRTGVCITYTIEKVTFQGVLYESNFTFAQYYNVLYFGSQLKYVR--ILGKVYEVAPCfEASYDVLFRSSSSFGLlyrsfdcnqlrISASRF AERLLPSHNGTATalgclfnaTYAPNDTMVNCTNPL----GDGFCAD-LLSNVVVRRMTFEKHDTTYVAPVTIerftelPLDHQLVLTEQFLQTTMPKFS ISCETYICDVSKACKNLLFRYGGFCQKIEADIRGAGVLLDSDVSGLYST-IAAKTSSIMPTTDRFNVSQfFLPKVQSTSERFESRSVIEDLLFSKIETTG PGFYG-DYYNCKKN-AIQDLTCAQYHNGILVIPPVMDAETLGMYGGIAAASLTLGIFGGQAGItTWSLAMAGRLNALGVVQNALVDDVNKLANGFNQLTA SV--------------SKLALTTSSALQAIQAVVNQNAAQVESLVSGITENFGAISTNFKVISQRLDKLEADVQMDRLINGRMNVLQLFVTNYKLKIAEL RNTHRYVQSLINECVYAQSLRNGFCGQGLHVLSLMQNAPSGIMFFHYSLIPNNTIIVKTTPGLCESDELGskcIVAKDGVLVSANLS-YWQWSPRNLYKP ENLTFANVIAVSrGANYTTLNRTFDipELNNTFP-------------- >UniRef50_B2BW33(430-1341:1472) Spike protein n=1 Tax=Beluga Whale coronavirus SW1 RepID=B2BW33_9GAMC E=0 s/c=0.91 id=34% cov=83% ---------------------------------------------------------------------------------------------------- -----------------------------------------------------PLPMVKAFIIDFKQRQLAIDGFPVGAL--IADFEFRFSIVAMPQTFI STLNYTTALVTFDKGNVRSVIDCNSekPFDRLRCDLQTDVVSDGFYPVNiKTNEAKENTTFIDVP--ATLANLTLEVFVSSPEQSPACVIKSYKCVDTRY fyiSDYSYSCAENGIPNDAAGAAYCRGVLDQINNYGVRgmdfKGKCPFAGSKVNSGLTFDKICFGVYEQ--GCQSDKACRFGFYFDNVQFSQY-----GN KLYYKPQDL-GFIDYqfgtlfknslvqSNIIQEGCHDYDIYGYKGTGVVKPfSDYSYLqtGGLIMLDSGGFPSLFR--YNFALYEVTQCtREVAQLAVAS NNAIGYYLPKQVTIDGVNASTscnTTGAFKYcyyddvihvgrdVSNVTINVCNPSLMMENSHCINIQGNFMVNEPAITFNSTqyQPLlgVSGDVQLPRTL MLHTTTEFIQTHSPKIVIDCTKYVCGSSERCRRILVKYGGFCESIMRLLNGVNMADDVSVTDFLdnfnSFDNISVSLQNLNasfgQFEGYGFQKFLPKSf dFDGSDPRDARSTIEDILFDKVTTVGLGTVDADYDKCTKGLSVADLVCAQYYNGIMVLPGVADAEKMAMYTGALVGGMVLGGITSAAAIPFATQIQARVN YLALTQNAIQENQKIIVQQFNKAIDSMTSAFQSVN-------EGFSAVSSAITEVQNAVNAQSQALTKLLGQLNYNFGATTSSIKELYERLAKLEADVQV DRLINGRLTALSAFVAARQVEAAKVASQRVLAAEKINECVKSTSNRYGFCGNGAHIISFPQNAPNGMLFVHFSLVPNETITVKGIIGLCLNNSIGIVPaK DRGMFIQCSNGTYcpefensfneskngnvtfpfAITSREQYNPRQITTGDIQMLTSCNSGYTHIEWSQLPLVAPPYDDFDKEFDKL-- >UniRef50_A3EXG6(281-1154:1274) Spike protein S2 n=4 Tax=Rousettus bat coronavirus HKU9 RepID=SPIKE_BCHK9 E=0 s/c=0.85 id=30% cov=76% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ------------NNGSVANAADCaDSAAEELYCVTGSFDPPTGVYPlsryraqVAGFVRVTQRGSYCTPPysvlqdppqpvvwrryMLYDCVFDFTVVVD SLPTHQLQCYGVSPRRLASMC-YGSVTLDVMRINETHLNNLFNRVPdTFSLYNYALPDNFYgclhAFYLNSTAPYAVANRF--PIKPGGRQSNSAFIDTV INAAHYSP----FSYVYGLAVITLKpaagsKLVCPVANDTVVITDRCVQYNLYGYTGTGVLSKNTSLVIpdGKVFTASSTGTIIGV--SINSTTYSIMPC VTVPVSVGYHPNFERALLFNGLSCSQRSRAVTEPvSVLWSASATaqdafdtpsgcvvnvelrnttivNTCAMPI---GNSLCFINGSIATANadslprlq lvnydPLYDNSTATPMTPVYWVKVPTNFTLSATEEYIQTTAPKITIDCARYLCGDSSRCLNVLLHYGTFCNDINKALsRVSTILDSALLSLVKELSINTR DEVTTFSFdGDYNFTGLMGCLGPNCGATTYRSAFSDLLYDKVRITDPGFM-QSYQKCIDsqwGGSIRDLLCTQTYNGIAVLPPIVSPAMQALYTSLLVGA VASSgytfGITSAGVIPFATQLQFRLNGIGVTTQVLVENQKLIASSFNNALVNIQKGFTETS--------------IALSKMQDVINQHAAQLHTLVVQL GNSFGAISSSINEIFSRLEGLAANAEVDRLINGRMMVLNTYVTQLLIQASEAKAQNALAAQKISECVKAQSLRNDFCGNGTHVLSIPQLAPNGVLFIHYA YTPTEYAFVQTSAGLCHNGT-GYAPRQGMFVLPNNTNMWHFTTMQFYNPVNISASNTQVLTSCSVNYTSVNYTVLEPSVPGDYDFQKEFDKF-- >UniRef50_A3EXD0(294-1239:1352) Spike protein S2 n=12 Tax=root RepID=SPIKE_BCHK5 E=1e-177 s/c=0.66 id=34% cov=58% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------LDVCVEYSLHGITGRGVFHNCTSVGLRNQRFVYDTFDNLVGYHSDNGNYYCVRPCVSVPVSVIYDKasnshaTLFGSvacshvttmmsqfs rMTKTNllarTTPGPLQTTVGCAMGFINSSmvvdecqlplGQSLCAIPPTTSSRVRRATSGAsdVFQIATLNFTSPlTLAPINSTGfvVAVPTNFTFGVT QEFIETTIQKITVDCKQYVCNGFKKCEDLLKEYGQFCSKINQALHGANLRQDESIANLFsSIKTQNTQPLQAGLNGDFNLT-MLQIPQVTTGERKYRSTI EDLLFNKVTIADPGYM-QGYDECMQQGpqSARDLICAQYVAGYKVLPPLYDPYMEAAYTSSLLGSIAGASWTAGlssfAAIPFAQSIFYRLNGVGITQQV LSENQKIIANKFNQALGAMQTGFTTTN--------------LAFNKVQDAVNANAMALSKLAAELSNTFGAISSSISDILARLDTVEQEAQIDRLINGRL TSLNAFVAQQLVRTEAAARSAQLAQDKVNECVKSQSKRNGFCGTGTHIVSFAINAPNGLYFFHVGYQPTSHVNATAAYGLcntenpqkCIAPIDGYfVLN QTTSTVADSDQQWYYTGSSFFHPEPITEANS-KYVSMDVKFENLTNRLPPPLLSNSTdlDFKEELEEF-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * C 1 * 0 * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 2330 0 0 V 2 1902 * * * * * * * * * * 2101 * * * 2998 1966 3081 * * 2 0 * * * * * * 2330 0 0 G 3 * * * * * 193 * * * * * * * * * 2998 * * * * 3 0 * * * * * * 2330 0 0 H 4 * * * * 1943 * 3081 * * * * * * * * * * * * 686 4 0 * * * * * * 2330 0 0 S 5 1966 * * * * * * 2998 * * * * 1987 * * 3081 3111 2914 * * 5 0 * * * * * * 2330 0 0 E 6 2041 * 3111 3081 * 2998 * * 2889 * * * * * * * 1927 * * * 6 0 * * * * * * 2330 0 0 N 7 * * * * * * 3091 * * * * 684 * * * * * * * 1943 7 0 * * * * * * 2330 0 0 V 8 * * * * * * * 2101 * * * * * * * * * 383 * * 8 0 * * * * * * 2330 0 0 F 9 * * * * 0 * * * * * * * * * * * * * * * 9 205 * 2914 * * * * 2330 0 0 A 10 761 * * * * * * * * * * * 2887 * * 1863 * * * * 10 0 * * * * 0 * 2222 0 1000 V 11 * * * * * * * * * * * * 2940 * * * 1383 1040 * * 11 0 * * * * * * 2330 0 0 E 12 * * 2993 3081 * * * * * 2998 * 2889 2914 3111 * 3091 2940 * * * 12 0 * * * * * * 2330 0 0 S 13 * * 2998 1987 * * * * * * * * * 3111 * 2036 * 1927 * * 13 0 * * * * * * 2330 0 0 G 14 * * 3111 * * 676 * * * * * 1953 * * * * * * * * 14 0 * * * * * * 2330 0 0 G 15 * * * * * 0 * * * * * * * * * * * * * * 15 0 * * * * * * 2457 0 0 Y 16 * * * * * * 3191 * 3105 3280 * * * * 2257 * 3078 * * 1541 16 0 * * * * * * 2457 0 0 I 17 * * * * * * * 194 * 2987 * * * * * * * * * * 17 0 * * * * * * 2457 0 0 P 18 * * * * * * * * * * * * 194 * * * 2987 * * * 18 0 * * * * * * 2457 0 0 S 19 3280 * * 2086 * 2151 3123 * * * * 3317 3078 * * 3282 * * * * 19 0 * * * * * * 2457 0 0 N 20 * * 1139 * * 1623 * * * * * 2177 * * * * * * * * 20 0 * * * * * * 2457 0 0 F 21 * * * * 0 * * * * * * * * * * * * * * * 21 0 * * * * * * 2457 0 0 A 22 3282 * * * * * 2987 * * * * 3280 2257 * 3078 1554 * * * * 22 0 * * * * * * 2457 0 0 F 23 * * * * 386 * * 2987 * 3199 * * * * * * * * * * 23 194 * 2987 * * * * 2457 0 0 N 24 * * 2889 * * * * * * * * 684 * * * 3091 2998 * * * 24 0 * * * * * 0 2330 0 1000 N 25 * * * * * * * * * * * 0 * * * * * * * * 25 0 * * * * 0 * 2330 0 1000 W 26 * * * * 2987 * * * * * * * * * * * * * 194 * 26 0 * * * * * * 2457 0 0 F 27 * * * * 194 * * * * * * * * * * 2987 * * * * 27 0 * * * * * * 2457 0 0 L 28 * * * * 3193 * * * * 809 3286 * 3177 * * * * * * 3230 28 0 * * * * * * 2565 0 0 L 29 * * * * * * * * * 156 * * * * 3286 * * * * * 29 0 * * * * * * 2565 0 0 T 30 * * * * * * * * * * * * * * * 1687 537 * * * 30 0 * * * * * * 2565 0 0 N 31 * * 3276 * * * * * * * * 157 * * * * * * * * 31 0 * * * * * * 2565 0 0 T 32 * * 3370 * * 2328 * * 3276 * * * * * * 974 3449 * * * 32 0 * * * * * * 2565 0 0 S 33 * * * * * * * * * * * * * * * 169 3177 * * * 33 0 * * * * * * 2565 0 0 S 34 * * * * * * * 3177 * * * * * * * 2315 539 * * * 34 0 * * * * * * 2565 0 0 V 35 * * * * 3286 * * 2358 * 1815 * * 1615 * * * * 3449 * * 35 0 * * * * * * 2565 0 0 V 36 * * * * * * * 1667 * 3370 * * * * * * * 765 * * 36 0 * * * * * * 2565 0 0 D 37 * * 1386 3355 * * 3370 * * * * * * 3276 * 1645 * * * * 37 0 * * * * * * 2565 0 0 G 38 * * * * * 167 * * * * * * * 3193 * * * * * * 38 0 * * * * * * 2565 0 0 V 39 * * * * * * * 3193 3370 3177 3230 * * * 1339 * * 2463 * * 39 0 * * * * * * 2565 0 0 V 40 3355 * * * 2258 * * 2313 * 3177 * * * * * 3477 * 1778 * * 40 0 * * * * * * 2565 0 0 R 41 * * * * * * * * * * * * * * 1317 * 3230 1023 * * 41 0 * * * * * * 2565 0 0 S 42 * * * * * * * * * 3477 * * * * * 736 1691 * * * 42 0 * * * * * * 2565 0 0 F 43 * * * 3445 2401 * * * * * * 2327 * * * 3276 3193 3230 * 2319 43 0 * * * * * * 2565 0 0 Q 44 * * * * * * * * * * * * * 0 * * * * * * 44 0 * * * * * * 2565 0 0 P 45 * * * * * * * * * * * * 0 * * * * * * * 45 0 * * * * * * 2565 0 0 L 46 * * * * 3230 * * * * 735 3355 * * * * * * 2358 * * 46 0 * * * * * * 2565 0 0 L 47 * * * * * * * * * 1023 * 3230 * * 2414 * * * * 2225 47 0 * * * * * * 2565 0 0 L 48 * * * * * * * * * 738 * * * * * * * 1321 * * 48 0 * * * * * * 2565 0 0 N 49 3177 * * 3276 * * * * * * 3445 1782 * * 3193 2291 3477 * * * 49 0 * * * * * * 2565 0 0 C 50 * 0 * * * * * * * * * * * * * * * * * * 50 167 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