HHsearch 1.5 NAME c9nhnF_ FAM FILE c9nhnF_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9nhnF_.a3m DATE Sat Jun 28 12:16:26 2025 LENG 116 match states, 116 columns in multiple alignment FILT 63 out of 65 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.4004 -1.0682 SEQ >ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHCC >ss_conf 9210223567888899998766435456778987764332444444312243203556520000133333455678788445788999877999999999 9999999898887339 >Consensus gxlxxagsxmgaasxaltxqtxwGikxLqaRvxaxExylkdQxllxxwGCxxkxichtxVpwnxswxnxxxxxiWxNmTWxqWekxIxnxtxxIyxlLee aqxQQEkNexdLlxLd >c9nhnF_ GFLGAAGSTMGAASMTLTVDTHWGIKQLQARVLAVEHYLRDQQLLGIWGCSGKLICTTNVPWNSTWSNKTLSEIWDNMTWLQWDKEISNYTQIIYGLLEE SQNQQEKNETDNLTCD >UniRef50_Q70IG7(528-672:864) Envelope glycoprotein gp160 n=3 Tax=Primate lentivirus group RepID=Q70IG7_SIVCZ E=7e-36 s/c=1.04 id=42% cov=100% GFLSAAGTVMGAVGTGLAVQSRdllagivqqqqellraveghsallqlsvWGIKNLNARLTAIEKYLKDQALLNEWGCAWKQICHTSVEWsnQSIPGLAL YQPDFQNMTWQQWETDIAALFGNVSDALKKAQAQQERNVHEVQSL- >UniRef50_Q9WPP0(572-700:919) Envelope glycoprotein n=50 Tax=Lentivirus RepID=Q9WPP0_SIVCZ E=2e-28 s/c=0.98 id=42% cov=88% ---------MGLVSTILTVQaqavlqgilqqqkqllvlvekqqellrlTIWGVKNLQARLTALEEYVQDQSLLASWGCQWKQVCHTNVPWNY-----NIT PNWTKDTWMEWDRQVKMYDDNITALLQEAYVTELENQNKFKQL- >UniRef50_Q3Y655(27-106:143) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q3Y655_9HIV1 E=5e-13 s/c=0.94 id=38% cov=70% --------------------------------SALERYLKDQQLLGIWGCSGNSSAPLLCLGTLVGVINLSMIFGRTCLGCSGIEKLSNYTNTIYKLLED SQIQQDNNEKNF---- >UniRef50_Q698X0(9-109:130) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q698X0_9HIV1 E=1e-09 s/c=0.63 id=37% cov=88% -------------STAYVGLTVWGITA-PGKSPGSGKIPKDQQLPRNLRLLWKAHLHHYSAQTLLGVIKLIINIGEH-DLAAKDKEISNYTSIIYELIEE SQNQQEKNEQDLLALD >UniRef50_Q64G66(10-98:98) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G66_9HIV1 E=5e-16 s/c=0.96 id=43% cov=68% -----------------------GLRHLSSSrqaVLAIKKYLKNQPLLGISGCSCKTHLHHCCTLGLYWSLQSQKKIQNHITYMQWNKKISNYTGTIYKL LNES--------------- >UniRef50_Q9DKV4(604-705:849) Envelope n=25 Tax=Ovine/caprine lentivirus group RepID=Q9DKV4_CAEV E=2e-20 s/c=0.98 id=28% cov=83% ------------ASYAMIQHVAKGIRILEARVARMEVMMDRMMLYQEVDCWHYHQYCVTSTRADIVNYINWTRFKDNCTWQEWEREISAHEGNITILLKE SaritQLAQQK--------- >UniRef50_Q64G54(5-109:139) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G54_9HIV1 E=2e-17 s/c=0.86 id=29% cov=91% ----------GATAYSCNSRSR-GIKQLQTRVLALGKIPKGSTAPRNLGLLWKTHLHHCCAVESSWSNKSQGAIWvTRLGWSAIEKLI-ITQTHYTGCLK NRKTSRNKLKRDLLALD >UniRef50_Q64FP6(34-115:144) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q64FP6_9HIV1 E=4e-10 s/c=0.80 id=43% cov=41% ----------------------------------------------------------------------LNEIWNNMTWQPWDKEISNFHTDIYSLIED RRTSRKRMNRTYWHLD >UniRef50_Q64G85(12-116:145) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G85_9HIV1 E=5e-19 s/c=0.91 id=40% cov=90% -------------ATALLATHGLGIKQLHARVLALERYLKDQQLLRDLGLLWKTHLHHCCAlGTVVGGNRTKDYIWDNMTWDAGGIEKLAITQTQYtGWL EGIANPAGNKEKDLLALD # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 2311 0 0 F 2 * * * * 453 * * * * 2553 * * * * * * * 3334 * * 2 0 * * * * * * 2397 0 0 L 3 * * * * * * * * * 0 * * * * * * * * * * 3 0 * * * * * * 2397 0 0 G 4 3074 * * * * 1306 * * * * * * * * * 1068 * * * * 4 0 * * * * * * 2397 0 0 A 5 601 * * * * 3805 * * * 3669 * * * * * * 2392 * * * 5 0 * * * * * * 2397 0 0 A 6 0 * * * * * * * * * * * * * * * * * * * 6 0 * * * * * * 2452 0 0 G 7 * * * * * 0 * * * * * * * * * * * * * * 7 0 * * * * * * 2452 0 0 S 8 3430 * * * * * * * * * * * * * * 435 2576 * * * 8 0 * * * * * * 2523 0 0 T 9 1126 * * * * * * * * * * * * * * * 1138 3519 * * 9 0 * * * * * * 2523 0 0 M 10 * * * * * * * * * * 0 * * * * * * * * * 10 0 * * * * * * 2615 0 0 G 11 * * * * * 48 * * * * * * * * * 4935 * * * * 11 0 * * * * * * 2910 0 0 A 12 485 * * * * * * * * 4434 * * * * * 2962 3171 * * * 12 0 * * * * * * 2910 0 0 A 13 785 * * * * * * * * * * * * * 4491 * 3180 1918 * * 13 0 * * * * * * 3373 0 0 S 14 1982 * * * * 4267 * * * * * * * * * 525 * * * * 14 0 * * * * * * 3761 0 0 M 15 * * * * * * * 3644 * 4743 4848 * * * * * 1132 2480 * 2236 15 0 * * * * * * 3761 0 0 T 16 821 * * * * 4267 * 4139 * * * * * * * 3780 2384 4037 * * 16 0 * * * * * * 3761 0 0 L 17 * 3780 * * * * * * * 552 2576 * * * * * * * * 3691 17 0 * * * * * * 3761 0 0 T 18 3703 * * * * * * 3466 * 4024 * 3780 * * * 4634 990 2693 * * 18 0 * * * * * * 3761 0 0 V 19 2610 * * * * 3055 * 3400 * 5089 * * * 2842 * 3780 * 1398 * * 19 0 * * * * * * 3761 0 0 D 20 * * 4502 * * * 2842 * * 3691 * * * 794 3310 * 4024 * * * 20 788 1249 * 4812 52 * * 3761 2446 0 T 21 6087 * * * * * 4212 4349 * * * * * * * 2098 834 3512 * * 21 71 4383 * 4807 52 * * 3859 1363 0 H 22 2871 * * * * 4212 4802 2495 * * * * * * 2527 * * 1243 * * 22 315 2810 4215 4384 71 * * 3859 1887 0 W 23 * * * * * 5282 * * 2836 3990 * * * * * * * * 391 6885 23 0 * * * * 0 * 3750 0 1000 G 24 * * * * * 0 * * * * * * * * * * * * * * 24 0 * * * * * * 3890 0 0 I 25 5931 * * * * * 4214 673 * 4188 * * * * * * 4419 2317 * * 25 0 * * * * * * 3890 0 0 K 26 * * * * * * * * 587 * * * * * 1881 * 3991 * * * 26 0 * * * * * * 3890 0 0 Q 27 3991 * * * * * 4188 2619 * * * 1870 * 1324 * * 4428 * * * 27 94 * 3991 * * * * 3890 0 0 L 28 4119 * * * * * * * * 85 * * * * * * * * * * 28 0 * * * * 0 * 3750 0 1000 Q 29 * * * 2628 * * 5319 * * * * 3400 3195 1004 4150 4200 * * * * 29 0 * * * * * * 3891 0 0 A 30 565 * * * * 3195 * * * * * * * * * 4200 2968 4934 * * 30 0 * * * * * * 3891 0 0 R 31 * * * * * * * * 3028 * * * * * 281 4200 * * * * 31 81 4200 * 1585 585 * * 3891 1000 0 V 32 * * * * * * * 5700 * 2086 4873 * * * * 3195 * 732 * * 32 0 * * * * * * 3891 0 0 L 33 2379 * * * * * * * * 1143 * * 4023 5485 * 3948 2278 * * * 33 0 * * * * * * 3919 0 0 A 34 716 * * * * 2554 * * * * * * * * 2644 5650 4608 * * * 34 32 5504 * 0 * * * 3915 1000 0 V 35 * 5242 * * * 6333 * 2037 * 1570 3700 * * * * 4203 * 2377 4695 5766 35 0 * * * * * * 4120 0 0 E 36 * * * 381 * 2955 * * 3555 * * * * * 5766 * * * * * 36 0 * * * * * * 4120 0 0 H 37 4577 * 4705 5654 * 3786 6795 * 1246 * * 5566 * * 2231 5561 3935 3715 * * 37 18 * 6350 * * * * 4111 0 0 Y 38 * * * * 4627 * * 2879 * 3584 3708 6532 * * * * 4049 * * 755 38 0 * * * * * 0 4100 0 1000 L 39 * * * * * * * 3669 * 770 3708 * 2879 * * 4687 * 4011 * 5533 39 0 * * * * * 0 4100 0 1000 R 40 5514 * 3077 3160 * 5533 * * 1012 * * * * 3565 2778 * * * * * 40 0 * * * * * 0 4100 0 1000 D 41 * * 622 5172 * 3631 6224 5533 * * * 3500 * * 3077 * * * * * 41 0 * * * * * 0 4100 0 1000 Q 42 * * * * * * * * * * 3077 5533 * 360 * 3631 * * * * 42 0 * * * * * 0 4100 0 1000 Q 43 2118 * * 6180 * * * * * 5533 3077 * 4412 1318 * 3976 3631 5410 * * 43 0 * * * * * 0 4100 0 1000 L 44 3631 * * * 6453 * * 4029 3496 761 * * * 4572 4008 5533 * 4574 * * 44 0 * * * * * 0 4100 0 1000 L 45 * * * * * * * * * 516 5351 * 2879 * * 5533 * * * 3077 45 0 * * * * * 0 4100 0 1000 G 46 4387 * * * * 1883 4574 * 3971 * * 2344 * 3708 2567 3166 * 5533 * * 46 0 * * * * * 0 4100 0 1000 I 47 6402 * 4287 2551 5533 * * 1964 * 2918 7563 2816 * 3557 * 3293 5514 * * * 47 0 * * * * * 0 4100 0 1000 W 48 * * * * 5514 5533 * 5172 * 2247 * * * * * 4412 * 3708 763 7563 48 0 * * * * * 0 4100 0 1000 G 49 * * 3061 * * 261 * * * * * * * * 4460 * * * * * 49 0 * * * * * 0 4446 0 1000 C 50 * 284 * * 4962 * * * * 2772 * * * * * * * * * * 50 0 * * * * * 0 4446 0 1000 S 51 1986 * * 3939 * * * * 4716 2772 * * * 5622 * 1483 * * 3061 * 51 58 * 4661 * * * 0 4446 0 1000 G 52 * 4744 5823 * 3124 1532 3337 * * 4439 * 4059 * * * * * * 1839 * 52 0 * * * * * 0 4369 0 1233 K 53 5509 * * * * * * * 706 * 4479 4835 * * 3181 5062 4439 * * 3337 53 20 6181 * 0 * 471 1844 4369 1000 1233 L 54 4071 * * * * * 3191 6389 * 2244 * * * 1434 * 4399 2531 5834 * * 54 0 * * * * * 0 4417 0 1000 I 55 * * * * * * 2210 1383 * 5780 * * * 4780 * 4002 * 2031 * 4693 55 0 * * * * * 0 4445 0 1000 C 56 4159 656 * * 5780 * 4693 * * 2527 * * * * * * * * * 3662 56 0 * * * * * 0 4445 0 1000 T 57 * 3653 * * * * 987 * * * * * 4062 4736 4546 * 2318 * * 3733 57 0 * * * * * 0 4515 0 1000 T 58 * * * * * * 2592 * * 4141 * * * * * 4566 668 3806 * 4867 58 0 * * * * * 0 4610 0 1000 N 59 3971 2674 6854 * * * * 5593 * 4661 5866 2727 * * 5633 2765 1721 * 5133 4524 59 33 5465 * 0 * * 0 4610 1000 1000 V 60 * 2268 * * * * * * * * * * * * * 3121 * 562 * * 60 29 * 5647 * * * 0 4610 0 1000 P 61 2927 * * 3857 * * * * 4716 4705 * * 854 * * * 2558 * * * 61 91 4671 5527 0 * * 0 4592 1000 1282 W 62 * * * * * 2899 * * * 4719 * * * 4530 3496 4842 * 4623 688 * 62 99 5053 4794 1000 1000 * 0 4592 1000 1560 N 63 4870 * * 3872 * 4694 * * 5670 * * 1052 * 3812 * 4608 2030 * * * 63 138 5790 3772 0 * * 0 4576 1000 1709 S 64 5067 * 3516 3272 * * * * 4572 2405 * 4534 * 5098 4135 1947 4403 3991 * 4330 64 74 * 4330 * * 3035 188 4554 0 2037 T 65 3021 * * 5328 * 5581 * 3883 * 4479 * * * * * 1496 2608 2648 * 4638 65 0 * * * * 2106 381 4506 0 2115 W 66 4515 5104 4788 * * 2505 * * * * * * 5126 * * * * 4176 665 * 66 66 4489 * 0 * 3034 188 4518 1638 2196 S 67 4747 * * 5285 * 2587 * 3746 * * * 2751 5973 * * 1699 5283 2336 * * 67 86 * 4106 * * 1146 867 4521 0 2199 N 68 * * * 4502 * 4573 * 2595 * 3320 * 1024 * * * 5935 * 4041 * 3656 68 86 5120 5090 1000 1000 2397 304 4457 1000 2017 K 69 5363 * 3718 * 4485 * 4620 3766 2040 * * 2746 * 4023 2815 4878 4480 4502 * 5493 69 51 * 4849 * * 1528 614 4418 0 2022 T 70 * 5193 * * * * * * 5329 2074 * 3044 * * * 1519 2491 * * 4008 70 45 5936 6104 3322 152 1687 536 4530 1000 2167 L 71 5598 * * 5113 6495 * * 2862 3881 2620 5217 4461 5180 2196 4307 4691 5811 * 3854 3699 71 86 4830 5472 1000 1000 190 3020 4771 1000 1950 S 72 * * 2363 3365 * 4258 * 4565 4489 * 3773 4817 5655 5491 5387 4596 1636 4969 * * 72 91 4498 5883 2196 355 528 1706 4612 1601 1228 E 73 4612 4942 3599 2964 * 5721 * 4531 3910 * * 4622 1765 6545 2907 5852 4772 * * 4203 73 28 5718 * 0 * 441 1926 4575 1000 1173 I 74 5343 * 3002 5797 2606 5606 * 1075 * 5682 * 3720 5461 5395 * * * * * 4999 74 28 5682 * 2585 263 0 * 4625 1000 1000 W 75 * * * * 4493 2867 * * 3319 * * * * 4826 * * * * 550 * 75 88 4612 5777 0 * * * 4788 1000 0 D 76 5926 * 2042 3013 * 3229 * 5409 5729 * * 2216 * 3636 4708 * 3018 * * 6567 76 0 * * * * 0 * 4722 0 1000 N 77 * * * * * * 3659 * 4011 * * 504 * * 4606 5558 3449 * * * 77 51 * 4860 * * * * 4836 0 0 M 78 * 2585 4531 3909 * * * 4750 * 2955 992 * * 5721 5318 * 6571 * * * 78 0 * * * * 0 * 4783 0 1000 T 79 * * 3712 * * 4606 * * * 4848 * * 4092 * * * 341 * * * 79 21 6090 * 0 * * * 4836 1000 0 W 80 * * * * * 3211 * * * 4021 * * * * * * * * 331 4828 80 40 5201 * 0 * * * 4836 1000 0 L 81 4860 3421 4545 * * * 5249 4789 4487 3522 2671 * * 1339 * 4606 * * * 4578 81 0 * * * * * * 4836 0 0 Q 82 3079 * * 1641 * * 5618 * 5414 * * 3705 6036 1554 * 4095 5249 * * * 82 0 * * * * * * 4836 0 0 W 83 * * * * * 2490 * 4606 4860 * * * * * * * * * 422 * 83 0 * * * * * * 4836 0 0 D 84 * * 1947 1285 * 4520 4420 2888 * * * 4807 * 5394 * 5584 * * * 5346 84 0 * * * * * * 4856 0 0 K 85 * * * 3052 * * * 4520 1431 5349 5851 * * 4997 1627 * 3878 * * * 85 0 * * * * * * 4856 0 0 E 86 * * 4427 1523 * * 5649 * 2217 3044 * 5725 * 3351 3165 5590 * * * * 86 0 * * * * * * 4856 0 0 I 87 * * * * * * * 1021 4520 2834 * * * * * * 3932 1956 * * 87 62 * 4581 * * * * 4856 0 0 S 88 2875 * 2255 4330 * 4497 * * 5625 4446 * 3689 * 5817 4198 1538 * * * * 88 0 * * * * 0 * 4745 0 1000 N 89 2827 * * 5683 6273 * * 3699 * * 5665 831 * 4811 5725 4871 5349 * * 4189 89 0 * * * * * * 4856 0 0 Y 90 5247 * 5584 * 5231 * 3532 4050 * 2077 * * * * * 5023 3699 5649 6455 1310 90 0 * * * * * * 4856 0 0 T 91 * * 5606 2583 4361 * 4223 * * * 5305 * 6436 3515 * 4032 930 * * * 91 0 * * * * * * 4945 0 0 Q 92 4112 * 2589 * * 1596 * * * * * 4711 * 2573 4754 3118 3528 * * * 92 0 * * * * * * 4945 0 0 I 93 * * 5922 4236 * * 3851 2879 5899 4119 * 1720 * 4180 * * 2246 3619 * * 93 0 * * * * * * 4945 0 0 I 94 * * * * * * * 364 * 4899 * * * 4511 * * * 4361 5786 3666 94 0 * * * * * * 4945 0 0 Y 95 * * 4249 4657 5181 * 5665 4754 * * * * * 5265 * 2310 2580 * * 1223 95 65 4511 * 0 * * * 4945 1000 0 G 96 4572 * 2750 3319 * 2978 * 4287 3080 4899 * 2787 * 4552 4825 3490 6013 4270 * * 96 0 * * * * * * 4945 0 0 L 97 3530 4582 5539 4709 * * * 5786 * 806 4393 * * 6382 5320 4860 5519 * 4511 4754 97 0 * * * * * * 4945 0 0 L 98 * * * * * * * 2127 * 375 * * * * * * * * * * 98 0 * * * * * * 4945 0 0 E 99 5519 * * 1160 * 6654 * * 2283 * * 4819 * 2978 4033 * 5320 3906 * * 99 0 * * * * * * 4945 0 0 E 100 4546 * 3665 1255 * 4511 * 4534 3146 5637 * 3380 * 3307 5786 * * 5377 * * 100 0 * * * * * * 4945 0 0 S 101 997 * * * * * * 4361 * * * * * * 3332 1511 * * * * 101 35 5368 * 2000 415 * * 4863 1000 0 Q 102 3428 * * * * * 3486 * 3198 * * * * 778 5002 * * * * 3401 102 0 * * * * * * 4793 0 0 N 103 3462 * 3489 3033 * * * 3362 * 4018 * 1949 6183 5322 5614 5932 2633 4530 * * 103 0 * * * * * * 4709 0 0 Q 104 5218 * * 5318 * * 5449 * * 5518 * * 4189 609 5454 2999 4481 * * * 104 0 * * * * * * 4721 0 0 Q 105 4187 * * 2862 * * 5430 * 4668 * * * * 608 3491 * * * * * 105 0 * * * * * * 4648 0 0 E 106 * * 4802 691 * 4187 * * 4618 5177 * 3963 * 2669 * * * * * * 106 0 * * * * * * 4648 0 0 K 107 * * * 3815 * * * * 1092 * * 2937 * 3956 2222 4852 5974 * * * 107 0 * * * * * * 4648 0 0 N 108 * * * * * * * * 4033 4230 4145 270 * * * * * * * * 108 0 * * * * * * 4547 0 0 E 109 * * * 1074 * * * * 3283 5819 3774 4451 * 3443 * * 4524 2734 * * 109 0 * * * * * * 4517 0 0 T 110 * * * * 4072 * 2610 * 1724 * * 4739 * 2311 3131 * 6063 * * 3238 110 0 * * * * * * 4517 0 0 D 111 4014 * 1311 1586 * * * * 3256 * * 4275 * * * * 4451 * * * 111 0 * * * * * * 4517 0 0 N 112 * * * * 3708 * * * * 294 * 5792 * * * * * 4680 * 4293 112 0 * * * * * * 4531 0 0 L 113 5105 * * 5106 * * * * 4515 858 * * * 2039 * * 5217 * 4260 5370 113 0 * * * * * * 4288 0 0 T 114 1572 * * 2210 * * 4248 * 2071 * * * * 4162 * 3747 5240 * * * 114 0 * * * * * * 4295 0 0 C 115 * 5231 * * 3903 * * * * 142 * * * * * * * * * * 115 0 * * * * * * 4294 0 0 D 116 * * 321 * * * * * * * * 2325 * * * * * * * * 116 0 * * 0 * * * 3283 0 0 //