HHsearch 1.5 NAME c9nhkD_ FAM FILE c9nhkD_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9nhkD_.a3m DATE Sat Jun 28 11:02:03 2025 LENG 112 match states, 112 columns in multiple alignment FILT 71 out of 73 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.7 EVD 0.4382 0.4604 SEQ >ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCH HHHHHHHHHHCC >ss_conf 9430345799999997644463477799998874304344553022554226320122101355566635887860054689999889999999984120 668997887339 >Consensus xxxxxxxgaasxxlxltvwGIKqLqaRvxalEkylkdQxllxxwGCxxkxiCxtxvpwnxswxnxsxxxiwxnmTwxxwxkkixnxtxxIxxlLexaqxq qeknxkdLlxLd >c9nhkD_ GAAGSTMGAASMTLTDTHWGIKQLQARVLAVEHYLRDQQLLGIWGCSGKLICTTNVPWNSTWSNKTLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQ QEKNETDNLTCD >UniRef50_Q64G54(2-109:139) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G54_9HIV1 E=6e-06 s/c=0.48 id=27% cov=91% -------GATAYSCNSRSRGIKQLQTRVLALGKIPKGstapRNLGLLWKTHLHHCCAV----ESSWSNKSQGAIWVTRLGWSAIEKLIITQTHYTGCLKN RKTSRNKLKRDLLALD >UniRef50_Q64G68(7-104:138) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G68_9HIV1 E=2e-18 s/c=0.95 id=30% cov=84% -------------LQLTVYGIKQLQARVLALERYLRDQQLLGMYGCSRNSSAPLLCLRTPVRVINLYEGFKIIVPRCNRIKKLIIIQTSYTIYLKSRKTS KKQMKK------ >UniRef50_Q698X0(8-109:130) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q698X0_9HIV1 E=2e-15 s/c=0.82 id=39% cov=85% ----------------TVWGI-TAPGKSPGSGKIPKDQQLPRNLRLLWKAHLHHYSAQTLLGVIKLIINIGEHDLAAK-DKEISNYTSIIYELIEESQNQ QEKNEQDLLALD >UniRef50_Q698X3(8-113:134) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q698X3_9HIV1 E=1e-14 s/c=0.76 id=19% cov=89% -------------LKLTVWGIKTAPGKSLGCGKIPKGSTAPRNLGLLWKaSSCTTNVPWELKLEKQiSGIHLGEHELGYNGKGKLKITHTQYTPYLKNRR ISRKRMNKTLLALD >UniRef50_Q64G85(8-116:145) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G85_9HIV1 E=7e-22 s/c=0.95 id=37% cov=96% -----TLRGATALLATHGLGIKQLHARVLALERYLKDQQLLRDLGLLWKTHLHHCCAlGTVVGGNRTKDYIWDNMTWDAgGIEKLAITQTQYTGWLEGIA NPAGNKEKDLLALD >UniRef50_P23423(708-807:991) Transmembrane protein n=636 Tax=root RepID=ENV_VILV2 E=1e-12 s/c=0.74 id=28% cov=72% -------------------GIRILEARVARVEALVDRMMVYHELDCwHYQHYCVTSTR-SEVANYVNWTRFKDNCTWQQWEEEIEQHEGNLSLLLREAAL Q------------ >UniRef50_Q64FP6(12-115:144) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q64FP6_9HIV1 E=2e-11 s/c=0.67 id=37% cov=51% --------------------------------------------------------PGILVGVINPLNEIWNNMTWQPWDKEISNFHTDIYSLIEDRRTS RKRMNRTYWHLD >UniRef50_Q70IG7(568-672:864) Envelope glycoprotein gp160 n=3 Tax=Primate lentivirus group RepID=Q70IG7_SIVCZ E=1e-29 s/c=1.24 id=39% cov=91% ----------SALLQLSVWGIKNLNARLTAIEKYLKDQALLNEWGCAWKQICHTSVEWsnQSIPGLALYQPDFQNMTWQQWETDIAALFGNVSDALKKAQ AQQERNVHEVQSL- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1549 0 0 A 2 0 * * * * * * * * * * * * * * * * * * * 2 0 * * * * * * 1812 0 0 A 3 0 * * * * * * * * * * * * * * * * * * * 3 0 * * * * * * 1997 0 0 G 4 * * * * * 0 * * * * * * * * * * * * * * 4 0 * * * * * * 2102 0 0 S 5 * * * * * 3257 * * * * * * * * * 159 * * * * 5 0 * * * * * * 2102 0 0 T 6 2799 * * * * * * * * * * * * * * * 367 * * 3628 6 0 * * * * * * 2534 0 0 M 7 * * * * * * * * * 2171 521 * * * 3628 * * * * * 7 0 * * * * * * 2534 0 0 G 8 * * * * * 329 * * * * * * * * 2635 4534 * * * * 8 0 * * * * * * 2996 0 0 A 9 246 * * * * 2673 * * * * * * * * * * * * * * 9 0 * * * * * * 3042 0 0 A 10 608 * * * * * * * * * * * * 4420 4148 4097 2634 5562 * * 10 0 * * * * * * 3265 0 0 S 11 1769 * * * * * * * * * * * * 4999 * 1131 2193 * * * 11 0 * * * * * * 3506 0 0 M 12 1586 * * 4480 * * * 3416 * 4592 4655 * * 4999 * * 3828 2766 * 2332 12 155 3299 * 4858 51 * * 3506 1464 0 T 13 3683 * * * * * * * * 1564 2535 * * * * 3335 2232 3328 * * 13 97 3941 * 4858 51 * * 3506 1318 0 L 14 3696 3842 * * * * * * * 229 * * * * * * * * * * 14 35 5386 * 0 * * * 3932 1000 0 T 15 3627 * * * * 5334 * * 2601 * * 3842 * 1542 3734 4986 2430 5386 * * 15 57 4682 * 4858 51 * * 3932 1463 0 D 16 4986 * 6276 * * * 3696 * * 589 * * * 5386 * 3842 3627 4686 * * 16 105 3828 * 4858 51 * * 3932 1568 0 T 17 * * * * * 4605 3757 * * * * * * * 4039 2444 643 * * * 17 0 * * * * * * 4095 0 0 H 18 5883 * * * * 3757 4842 2682 * 3761 * * * * * 4039 * 776 * * 18 82 5458 4937 4807 52 * * 4095 1000 0 W 19 * * * * * 4469 * * * 3678 * * * * 3993 * * * 377 4504 19 0 * * * * 0 * 4069 0 1000 G 20 * * * * * 50 4883 * * * * * * * * * * * * * 20 0 * * * * * * 4482 0 0 I 21 6203 * * * * * 4241 616 * 4883 * * * * * * 4511 2297 * * 21 49 * 4897 * * * * 4482 0 0 K 22 * * * * * * * * 258 * * * * * 2950 4867 * * * * 22 0 * * * * 0 * 4433 0 1000 Q 23 * * * * * * * 3755 * * * 1858 * 865 * 4883 3902 * * * 23 0 * * * * * * 4482 0 0 L 24 3914 * * * * * * * * 152 * * * * * 4888 * * * * 24 0 * * * * * * 4495 0 0 Q 25 * * * 3772 * * 4234 * * * * 3267 3914 691 3571 * * * * * 25 0 * * * * * * 4495 0 0 A 26 595 * 4403 * * 3202 * * * * * * * 4888 * * 3027 5289 * * 26 0 * * * * * * 4495 0 0 R 27 * * * 4888 * * * * 2987 * * * * * 326 * 4562 * * * 27 0 * * * * * * 4495 0 0 V 28 * * * 4584 * * * 5668 * 2087 5087 * * * * 2828 * 908 * * 28 0 * * * * * * 4534 0 0 L 29 3378 * * * * * * * * 1049 * * 3713 4239 * 3606 2257 * * * 29 0 * * * * * * 4534 0 0 A 30 546 * * * * 3198 * * * * * * * * 3817 4010 4949 * 4611 * 30 15 * 6566 * * * * 4535 0 0 V 31 * 4995 * * * * * 2145 * 1200 4855 * * * * 4358 * 2564 * 4190 31 26 5834 * 0 * * 0 4522 1000 1000 E 32 * * * 413 * 3308 * * 4272 * * * * * 4190 * * * 4588 * 32 0 * * * * * 0 4522 0 1000 H 33 4794 * 5861 5655 * 3920 7031 * 1149 * * 5761 * * 1790 7045 4229 4890 * * 33 0 * * * * * 0 4714 0 1000 Y 34 * * 4549 * 4791 * * 2673 * 3810 4890 6715 * * * * 4225 * * 746 34 0 * * * * * 0 4714 0 1000 L 35 * * * * * * * 3858 * 765 4890 * 2673 * * 5861 4549 4161 * 4786 35 0 * * * * * 0 4714 0 1000 R 36 5808 * 3841 3260 * 4786 * * 1015 * * * * 3538 2755 4549 * * * * 36 0 * * * * * 0 4714 0 1000 D 37 * * 692 5296 * 2571 6589 4786 * * * 3817 * * 3841 * * * * * 37 65 4506 * 2000 415 * 0 4714 1359 1000 Q 38 * * * * * * * 4549 * * 3841 4786 * 463 4506 3615 * * * * 38 0 * * * * * 0 4714 0 1000 Q 39 2318 * * 6521 * * * * * 5712 3841 3985 4809 1321 * 3757 3249 5535 * * 39 0 * * * * * 0 4714 0 1000 L 40 3615 * * * 6753 * * 4035 3673 824 * * * 4952 4117 3662 * 4794 * * 40 0 * * * * * 0 4714 0 1000 L 41 * * * * * 4506 * * * 564 5791 * 3148 * * 3662 * * * 3841 41 0 * * * * * 0 4714 0 1000 G 42 4464 * * * * 1854 4794 * 4070 4506 * 2575 * 4890 2610 2871 * 4786 * * 42 54 4761 * 2000 415 * 0 4714 1079 1000 I 43 6589 * 5389 2701 4733 * * 2091 * 2257 4966 3424 * 3652 * 3519 4700 * * * 43 0 * * * * * 0 4916 0 1000 W 44 * * * * 4093 4733 * 5370 * 2687 * * * * * 4825 * 4879 682 4966 44 0 * * * * 0 * 4916 0 1000 G 45 * * 3846 * * 299 * * 3469 * * * * * 5196 * * * * * 45 0 * * * * * * 4913 0 0 C 46 * 441 * * 6804 6639 * * * 3113 * * * * * * 3469 4694 * * 46 104 3846 * 0 * * * 4913 1202 0 S 47 1959 * * 4063 * * 2645 * 4857 3113 * * * 5643 * 1502 * * * * 47 23 6002 * 2000 415 * * 4913 1000 0 G 48 * 5705 5984 * 3351 1723 * * * 2433 * 4169 * * 4992 * * * 2168 3846 48 0 * * * * * * 4913 0 0 K 49 5758 * * 4694 * 6639 2842 * 974 * 4536 4001 * 4797 3432 6726 4623 * * * 49 40 5180 * 0 * * * 4913 1000 0 L 50 4656 * * * * * 2495 6757 * 2269 * 4694 * 1642 * 3473 3303 5984 * * 50 0 * * * * * * 4913 0 0 I 51 * 3229 * * * * 3226 1378 * * * * * * * 3296 6801 2176 * 3843 51 67 4775 6801 0 * * * 4946 1000 0 C 52 3097 367 * * * * * * * 3214 * * * * * * * * * * 52 0 * * * * * 0 4942 0 1000 T 53 3446 * * * * * 1359 * * * * * 3064 * 5452 * 2057 3864 * 3902 53 0 * * * * * 0 4971 0 1000 T 54 * * * * * * 3288 * * 2350 * * * * * 6203 582 5636 * * 54 48 * 4939 * * * 0 5019 0 1000 N 55 4020 3553 7420 4538 * 4557 * 5428 * 4323 5139 2537 * * 5800 2350 2013 * * 5266 55 35 * 5390 * * * 0 5017 0 1777 V 56 * 2277 * * * * * * * 4712 * * * * * 5243 3327 668 * * 56 44 * 5043 * * * 0 4988 0 1989 P 57 3389 * * 4005 * * * * 4863 3766 * * 805 * 4209 * 4462 4856 * 5147 57 156 5832 3553 0 * 2531 274 5114 1000 2667 W 58 4984 * * * * 2738 * * * 3753 * * * 5296 4659 * * 5305 613 * 58 124 5022 4286 1000 1000 1227 804 5125 1000 3409 N 59 * * 5447 2936 * 5123 * 5903 5445 * * 1166 * 3975 5971 5040 2168 * * * 59 101 5973 4282 0 * * 0 5165 1000 2592 S 60 5325 * 4469 3534 5308 * * 3929 3971 2196 * 4400 4685 5559 5651 2042 4604 4887 * 5292 60 35 * 5370 * * 1513 622 5149 0 2596 T 61 3414 * * 5593 * * * 5193 5083 5238 * 5390 * * * 1631 2679 1957 * 4590 61 70 * 4396 * * 2020 409 5240 0 2265 W 62 4728 5647 * * * 2037 * * * 5125 * * 5263 5292 4239 * * * 822 * 62 105 4578 5155 0 * 2052 398 5141 1640 3084 S 63 4830 * * 4078 * 2694 * 5753 * * * 3335 6157 * * 1657 5601 1827 * * 63 127 * 3570 * * 1159 857 4976 0 2930 N 64 * * * 6001 * 4728 * 1956 5152 3636 * 1061 * * * 6142 * * * 3524 64 18 * 6372 * * 2029 405 4924 0 2806 K 65 5369 * 4022 * 5705 * 5544 5088 2183 * * 2055 * 3568 2947 5900 4503 5063 * 3671 65 86 5128 5099 0 * 1747 510 5208 1000 2206 T 66 * * * * * * 4669 * * 1886 * 2863 5878 * * 1395 2928 * * 5376 66 70 4390 * 2133 373 1142 870 5255 1818 2396 L 67 5733 * * 4521 6868 5211 * 3589 3296 3348 4370 3779 4258 2380 5276 6025 5320 * 3847 3087 67 76 4993 5651 0 * 803 1228 5335 1000 1838 S 68 * * 2239 3172 * 3767 * 4278 4572 * 2957 4803 5832 5479 5692 6148 2049 5037 * * 68 40 5948 6498 3170 170 337 2263 5329 1000 1527 E 69 4856 5076 3251 3584 * 4284 5252 4089 3441 * * 5427 1785 6791 3618 5973 4637 * * 4082 69 27 5762 * 0 * 526 1710 5389 1000 1211 I 70 5549 * 3134 5821 2440 5715 * 1289 * 4535 * 3910 5586 5751 * * * * * 3548 70 25 5871 * 2585 263 * 0 5386 1000 1000 W 71 * * * * 4694 2107 * * 3657 * * * * 4870 * * * * 700 * 71 13 * 6849 * * * 0 5386 0 1000 D 72 6125 * 2429 2565 * 3966 * 3150 5067 * * 2360 * 3844 4825 * 3645 4793 * 6830 72 0 * * * * 447 1907 5281 0 1167 N 73 * * * * * * 3584 4881 4419 * * 817 * * * 5744 2003 * * * 73 0 * * * * * 0 5386 0 1000 M 74 * 2620 3653 3578 * * * 4870 * 3643 1310 * * 5821 4080 5237 * 4881 5709 * 74 0 * * * * 0 * 5386 0 1000 T 75 * * 6222 * * * * * * 2563 * * 2721 * * * 587 * * * 75 19 6222 * 0 * * * 5388 1000 0 W 76 3845 * * * * 2116 * * * * * * * * 4881 * * * 663 4873 76 0 * * * * * * 5388 0 0 L 77 4220 2530 4257 * * * 5753 5186 4664 3682 2928 * * 1650 * 5971 * * 4263 4664 77 0 * * * * * * 5388 0 0 Q 78 4257 * * 2032 * * 5826 * 4487 * 5026 3122 5972 1760 * 2593 5753 * * * 78 71 5303 5443 0 * * * 5388 1081 0 W 79 4815 * * * * 1716 * * * * * * * * 4849 * * * 677 * 79 0 * * * * 0 * 5361 0 1000 D 80 * * 2163 1844 * 5213 4571 1931 4514 5026 * 4873 * 5533 * 5717 * * * 5826 80 0 * * * * * * 5388 0 0 K 81 * * * 2239 * 5262 * 5213 1587 5554 6177 * * 5185 1824 * 4126 * * * 81 0 * * * * * * 5388 0 0 E 82 * * 4696 1879 * * 5777 * 1350 3806 * 5831 * 3623 3499 5620 * * * * 82 0 * * * * * * 5386 0 0 I 83 * * * * * * * 1396 5217 1681 * * * * * * 4119 2160 * * 83 0 * * * * * * 5386 0 0 S 84 2766 * 2543 4595 * 6226 * 3376 3810 5217 * 4052 * 6120 4338 2137 4408 4897 * * 84 0 * * * * * * 5386 0 0 N 85 3569 * * 5826 6467 * * 1884 * * 5737 1208 * 4239 5831 5167 5555 * * 4483 85 0 * * * * * * 5386 0 0 Y 86 5597 * 5719 * 5354 * 4466 3474 * 2128 * * * * * 5093 2162 5777 6763 1778 86 0 * * * * * * 5386 0 0 T 87 * * 5737 3053 4696 * 3006 * * * 5555 * 6860 2152 * 4161 1370 * * * 87 0 * * * * * * 5386 0 0 Q 88 3656 * 2922 * * 1954 * * 6214 * * 4778 * 3120 3853 3475 2405 5819 * * 88 0 * * * * * * 5386 0 0 I 89 * * 5981 4532 * * 3656 3328 6257 3672 * 2087 * 2903 * 3953 2534 4431 * 5819 89 0 * * * * * * 5386 0 0 I 90 * * * * * * * 699 * 5241 * 5237 * 5217 * * * 4696 6181 1989 90 0 * * * * * * 5386 0 0 Y 91 * * 4640 4855 5329 * 6412 3843 * * 5027 * * 5246 * 2579 1917 * * 1600 91 39 5217 * 0 * * * 5386 1000 0 G 92 4661 * 2990 3595 * 2608 * 4057 3377 5241 * 3285 4515 4010 5596 3289 5145 4463 * * 92 0 * * * * * * 5386 0 0 L 93 3838 3700 5590 4880 * * 5027 6120 * 1196 4647 * * 6760 5533 4586 5620 5237 4264 3243 93 0 * * * * * * 5386 0 0 L 94 5237 * * * 5027 * * 2626 * 357 * * * * * * * * * * 94 0 * * * * * * 5386 0 0 E 95 5620 * * 1344 * 6993 * * 1899 * * 4878 * 3203 4071 5237 5533 4067 * * 95 0 * * * * * * 5386 0 0 E 96 4895 * 4100 1661 * 3595 * 4797 3510 5719 * 2613 * 3484 4633 4367 * 5332 * * 96 0 * * * * * * 5386 0 0 S 97 1235 * * * * * 6104 4264 * 5237 * * * * 2266 2037 5027 * * * 97 0 * * * * * * 5386 0 0 Q 98 2866 * * * * * 3711 * 2621 * * * * 1154 3392 * * * * 3657 98 16 * 6519 * * * * 5342 0 0 N 99 3746 * 3689 3289 * * * 3380 * 5022 * 1861 4119 5489 5684 6264 2351 4830 * * 99 0 * * * * 0 * 5286 0 1000 Q 100 * * * 5494 * * 5540 * * 5758 * 6126 3167 908 5724 2166 4729 * * * 100 0 * * * * * * 5284 0 0 Q 101 3257 * * 3137 * * 5762 * 3800 * * * 4832 1085 2533 * 6331 * * * 101 0 * * * * * * 5207 0 0 E 102 * * 6013 1109 * 2717 * * 2640 5654 * 3597 * 3238 * * * * * * 102 0 * * * * * * 5207 0 0 K 103 6331 * * 3468 * * * * 1368 * * 3193 * 3628 1930 4467 6393 * * * 103 0 * * * * * * 5207 0 0 N 104 * * * 4242 * * * * 3754 4547 2562 674 * 4871 * * * * * * 104 58 4659 * 0 * * * 5140 1000 0 E 105 * 6075 * 1493 * * * * 2636 5944 4247 3808 * 3788 4776 5616 3924 2905 * * 105 0 * * * * * * 5254 0 0 T 106 * * * * 4247 * 2805 * 1065 * * 5296 * 2768 3685 * 6635 * * 3915 106 0 * * * * * * 5254 0 0 D 107 4192 * 1300 1865 * * 4463 * 3429 * * 4177 * * * * 3810 * * * 107 0 * * * * * * 4713 0 0 N 108 * * * * 3821 * * * * 296 * 5533 * * * * * 4628 * 4243 108 0 * * * * * * 4599 0 0 L 109 5371 * * 5276 * * * * 4822 689 * * * 2287 * * 4987 * 4778 5533 109 0 * * * * * * 4594 0 0 T 110 1206 * * 2342 * * 4840 * 2369 * * * * 4508 * 3751 5476 * * * 110 0 * * * * * * 4531 0 0 C 111 * 5469 * * 4918 * * * * 83 * * * * * * * * * * 111 0 * * * * * * 4531 0 0 D 112 * * 245 4503 * * * * * * * 3160 * * * * * * * * 112 0 * * 0 * * * 3900 0 0 //