HHsearch 1.5 NAME c9nhiF_ FAM FILE c9nhiF_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9nhiF_.a3m DATE Sat Jun 28 11:03:07 2025 LENG 120 match states, 120 columns in multiple alignment FILT 62 out of 64 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.5 EVD 0.4231 -0.0612 SEQ >ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHC >ss_conf 9201445677777888886533545645544566665310110300133320335431011353032245554334235767600267899876799999 99999999999999999619 >Consensus gxlxxagsxmgaasxxlxxqxxxlxxwGiKxlqarvxaxexylkdQxllxxwGcxxkxichtxvpwnxswsnxsxxxiWxNmTWxqWekxIxnxtxxIxx lLeeAqxQQEkNexeLlxLx >c9nhiF_ GFLGAAGSTMGAASMTLTVQARQLLSWGIKQLQARVLAVEHYLKDQQLLGIWGCSGKLICTTAVPWNATWSNKTLDNIWNNMTWMEWEKEISNYTNLIYN LIEESQNQQEKNETENLTLC >UniRef50_Q99FH6(520-659:837) Envelope glycoprotein n=1 Tax=Simian immunodeficiency virus RepID=Q99FH6_SIVCZ E=1e-33 s/c=1.03 id=45% cov=97% -LLSGAGAAMGSASVALTIQAQslngrasassnrmllklvetqsallQLTVWGVKNLQVRVATIEGYLEEQAKLASIGCANMQICRTIVPWNKTWG---E EDPWQNMTWKQWHERVRNYTDIIEADLVEAYDLQEENEKKLAEL- >UniRef50_Q9DKV4(610-705:849) Envelope n=25 Tax=Ovine/caprine lentivirus group RepID=Q9DKV4_CAEV E=0.0001 s/c=0.49 id=48% cov=28% -------------------------------------------------------------------------------DNCTWQEWEREISAHEGNITI LLKESaritQLAQQK--------- >UniRef50_Q699U6(516-660:840) Env protein n=3 Tax=Primate lentivirus group RepID=Q699U6_SIVCZ E=5e-38 s/c=1.09 id=47% cov=100% GLLSAAGTAMGSAATALTLQSQTLLAgivqqqqklleaveaqqhllgltvWGVKNLNARLTALETYLRDQAIMSNWGCAFKQICHTAVTWQQACGNnsRC PTPQWENMTWHTWERQVDNLTDHIDNLLREAQEQQEKNVHDLTKL- >UniRef50_Q9WPP0(572-700:919) Envelope glycoprotein n=50 Tax=Lentivirus RepID=Q9WPP0_SIVCZ E=2e-26 s/c=0.92 id=42% cov=88% ---------MGLVSTILTVQAQavlqgilqqqkqllvlvekqqellRLTIWGVKNLQARLTALEEYVQDQSLLASWGCQWKQVCHTNVPWNY-----NIT PNWTKDTWMEWDRQVKMYDDNITALLQEAYVTELENQNKFKQL- >UniRef50_Q3Y649(22-113:142) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q3Y649_9HIV1 E=8e-20 s/c=1.06 id=43% cov=77% ---------------------------GHKQLQARVLGSWKdTSRDQQLLGIWGCSGKLICTTNVPWNSSWSLNLRVRYGTTCPGCNGIKKLAITHRQYI NYLKNRKTSKEKNEQDLLA-- >UniRef50_Q64FP6(39-106:144) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q64FP6_9HIV1 E=4e-07 s/c=0.82 id=50% cov=32% --------------------------------------------------------------------------LNEIWNNMTWQPWDKEISNFHTDIYS LIEDRRTSRKR--------- >UniRef50_Q64G54(17-108:139) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G54_9HIV1 E=8e-15 s/c=0.88 id=29% cov=77% ---------------------------GIKQLQTRVLALGKIPKGSTAPRNLGLLWKTHLHHCCAVESSWSNKSQGAIWvTRLGWSAIEKLIITQT-HYT GCLKNRKTSRNKLKRDLLAL- >UniRef50_Q64G66(29-98:98) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G66_9HIV1 E=2e-14 s/c=1.15 id=46% cov=59% -----------------------------------VLAIKKYLKNQPLLGISGCSCKTHLHHCCTLGLYWSLQSQKKIQNHITYMQWNKKISNYTGTIYK LLNES--------------- >UniRef50_Q3Y655(9-104:143) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q3Y655_9HIV1 E=2e-14 s/c=0.83 id=41% cov=66% ------------------------------------SALERYLKDQQLLGIWGCSGNSSAPLLCLGTLVGVINLSMIFGRTCLGCSGIEKLSNYTNTIYK LLEDSQIQQDNNEK------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 2331 0 0 F 2 * * * * 462 * * * * 2564 * * * * * * * 3253 * * 2 0 * * * * * * 2416 0 0 L 3 * * * * * * * * * 0 * * * * * * * * * * 3 0 * * * * * * 2416 0 0 G 4 3125 * * * * 1386 * * * * * * * * * 992 * * * * 4 0 * * * * * * 2416 0 0 A 5 581 * * * * 3819 * * * 3731 * * * * * * 2433 * * * 5 0 * * * * * * 2416 0 0 A 6 0 * * * * * * * * * * * * * * * * * * * 6 0 * * * * * * 2522 0 0 G 7 * * * * * 0 * * * * * * * * * * * * * * 7 0 * * * * * * 2522 0 0 S 8 3571 * * * * * * 4039 * * * * * * * 551 2537 * * * 8 0 * * * * * * 2594 0 0 T 9 1110 * * * * * * * * * * * * * * * 1249 3108 * * 9 0 * * * * * * 2594 0 0 M 10 * * * * * * * * * * 88 * * 4080 * * * * * * 10 0 * * * * * * 2682 0 0 G 11 * * * * * 137 * * * * * * * 4080 * 4991 * * * * 11 0 * * * * * * 2682 0 0 A 12 645 * * * * * * * * 4405 * * * 4080 * 2879 3080 * * * 12 0 * * * * * * 2682 0 0 A 13 622 * * * * * * * * * * * * * 4248 * * 1748 * * 13 0 * * * * * * 2704 0 0 S 14 2056 * * * * 4303 * * * * * 4223 * * * 610 * * * * 14 0 * * * * * * 2747 0 0 M 15 * * * * * * * 3149 * 3321 4332 * * * * * 1143 1813 * * 15 0 * * * * * * 2747 0 0 T 16 980 * * 4789 * 4442 * 3842 * 4638 * * * * * * 2119 3824 * * 16 0 * * * * * * 2926 0 0 L 17 4692 * * * * * * 2934 * 453 3976 * * * 4781 * * * * * 17 0 * * * * * * 2678 0 0 T 18 3277 * * 2641 * * * * * * * * * 4692 * 4473 763 3976 * * 18 0 * * * * * * 2678 0 0 V 19 1637 * * * * 3690 * 3329 * 4804 * * * 4737 * * * 1224 * * 19 0 * * * * * * 2742 0 0 Q 20 * * 4042 4847 * * * * * * * * * 218 4486 * * * * * 20 0 * * * * * * 2742 0 0 A 21 1811 * * * * * * * * * 4737 * * 2225 * 1456 3333 * * * 21 0 * * * * * * 2742 0 0 R 22 * * * * * * 1856 * * 4737 * * * 2048 1261 5208 * * * * 22 521 2046 4042 3304 154 * * 2742 2257 0 Q 23 * * 5313 * * 5336 3138 * 2513 3719 * 5452 * 1925 4996 3104 2723 * * * 23 76 4286 * 4585 61 * 0 2593 1321 1000 L 24 * * * * * * * * * 73 * * * * * * * 4344 * * 24 114 3719 * 1000 1000 * 0 2593 1100 1000 L 25 * * * * * * * * * 734 * * * * 5992 4669 1541 * * * 25 228 2777 * 4585 61 0 * 2593 1838 1000 S 26 2887 * * * * * * 3349 4996 * * * * * * 1555 * 1340 * * 26 641 1479 * 4585 61 * * 2683 2371 0 W 27 * * * * * 2902 * * * * * * * * * * * * 239 5717 27 0 * * * * * * 2683 0 0 G 28 * * * * * 0 * * * * * * * * * * * * * * 28 0 * * * * * * 2901 0 0 I 29 5625 * * * * * 3811 789 * * * * * * * * 4043 1894 * * 29 0 * * * * * * 2901 0 0 K 30 * * * * * * * * 112 * * * * * 3748 * * * * * 30 0 * * * * * * 2901 0 0 Q 31 * * * * * * * * * * * 1492 * 810 * * 3757 * * * 31 0 * * * * * * 2901 0 0 L 32 3762 * * * * * * * * 110 * * * * * * * * * * 32 0 * * * * * * 2903 0 0 Q 33 * * * * * * 3657 * * * * 3118 3762 609 3711 * * * * * 33 0 * * * * * * 2903 0 0 A 34 505 * * * * 3762 * * * * * * * * * * 2500 4478 * * 34 0 * * * * * * 2903 0 0 R 35 * * * * * * * * 3426 * * * * * 141 * * * * * 35 0 * * * * * * 2903 0 0 V 36 * * * * * * * 5444 * 1801 4771 * * * * 3780 * 785 * * 36 0 * * * * * * 2958 0 0 L 37 4537 * * * * * * * * 729 * * * 5082 * 3710 2012 * * * 37 0 * * * * * * 2982 0 0 A 38 385 * * * * 2692 * * * * * * * * * 5320 4204 * * * 38 0 * * * * * * 2978 0 0 V 39 * 3882 * * * 6529 * 1993 * 1153 * * * * * 5342 * 2674 * 4675 39 0 * * * * * * 3154 0 0 E 40 * * * 366 * 3083 * * 4531 * * * * * 4703 * * * 5366 * 40 0 * * * * * * 3178 0 0 H 41 * * * 5471 * 3440 6410 * 1177 * * 5326 * * 1705 5564 3672 * * * 41 51 5366 6561 0 * * * 3178 1000 0 Y 42 * * * * 4592 * * 2749 * 4338 * * * * * * 3751 * * 544 42 0 * * * * * 0 3167 0 1000 L 43 * * * * * * * 3463 * 562 * * 2966 * * 5247 * 5384 * 4222 43 0 * * * * * 0 3337 0 1000 K 44 5328 * * 2883 * 4222 * * 873 * * * * 3377 2799 * * * * * 44 0 * * * * * 0 3337 0 1000 D 45 * * 588 4589 * 2966 6112 4222 * * * 3363 * * * * * * * * 45 0 * * * * * 0 3337 0 1000 Q 46 * * * * * * * * * * * 4222 * 289 * 2966 * * * * 46 0 * * * * * 0 3337 0 1000 Q 47 2027 * * 6233 * * * * * 5324 * * 4380 1276 * 3287 2966 5330 * * 47 0 * * * * * 0 3337 0 1000 L 48 2966 * * * 6469 * * 3955 3310 926 * * * 4477 3826 4222 * * * * 48 0 * * * * * 0 3337 0 1000 L 49 * * * * * * * * * 344 5036 * 2966 * * 4222 * * * * 49 0 * * * * * 0 3337 0 1000 G 50 3932 * * * * 1793 * * 3848 * * 2373 * * 2315 2955 * 4222 * * 50 0 * * * * * 0 3337 0 1000 I 51 5955 * 3128 4860 4222 * * 1898 * 2814 6563 3095 * 3402 * 3015 5328 * * * 51 0 * * * * * 0 3337 0 1000 W 52 * * * * 5328 4222 * 4589 * 2315 * * * * * 4380 * * 689 6563 52 0 * * * * * 0 3337 0 1000 G 53 * * * * * 0 * * * * * * * * * * * * * * 53 0 * * * * * 0 3382 0 1000 C 54 * 344 * * 5697 * * * * 2372 * * * * * * * * * * 54 0 * * * * * 0 3382 0 1000 S 55 1872 * * 3849 * * * * 4346 2372 * * * 5385 * 1354 * * * * 55 0 * * * * * 0 3382 0 1000 G 56 * 4280 5796 * 3095 1446 * * * 4399 * 3625 * * * * * * 1652 * 56 0 * * * * * 0 3451 0 1000 K 57 5224 * * * * * * * 538 * 4225 4305 * * 3041 6523 4383 * * * 57 96 3965 * 0 * * 0 3626 1571 1000 L 58 5812 * * * * * 3701 5995 * 2055 * * * 1480 * 3698 2359 5765 * * 58 0 * * * * * 0 3626 0 1000 I 59 * * * * * * 2631 1256 * 4723 * * * * * 3341 * 1820 * * 59 0 * * * * * 0 3633 0 1000 C 60 3679 469 * * * * 4723 * * 2631 * * * * * * * * * * 60 0 * * * * * 0 3633 0 1000 T 61 * * * * * * 823 * * * * * 3498 * 5005 * 2138 * * 3507 61 0 * * * * * 0 3764 0 1000 T 62 * 4614 * * * * 2737 * * 3800 * * * * * 4497 529 * * * 62 0 * * * * * 0 3759 0 1000 A 63 3621 2389 6892 * * * * 5016 * 4341 5478 2389 * * 5915 2674 2130 * 5378 * 63 0 * * * * * 0 3759 0 1000 V 64 4614 2024 * * * * * * * * * * * * * * * 487 * * 64 32 5495 * 0 * * 0 3759 1000 1000 P 65 4237 * * 3536 * * * * 4576 3154 * * 707 * * * 3416 * * * 65 41 * 5155 * * * 0 3759 0 1000 W 66 * * * * * 2329 * * * 3874 * * * * * * * 4527 537 * 66 21 * 6106 * * * 0 3941 0 1386 N 67 * * * 3663 * 3869 * 5401 5856 * * 1005 * 4411 * 4432 2184 * * * 67 72 * 4357 * * * 0 3939 0 1390 A 68 4613 * 4166 4392 5737 * * 5150 4462 2362 * 3310 * 4763 5282 2253 4464 3669 * 3797 68 102 * 3870 * * * 0 3943 0 1915 T 69 3255 * * * * * * * * * * * * 4206 * 1406 2263 2462 * 3760 69 0 * * * * 1888 454 3893 0 2102 W 70 * 4892 * * * 2274 * * * * * * * 5265 5548 4287 * * 597 * 70 191 3835 4216 0 * 2800 224 3892 1662 2116 S 71 4326 * * * * 2643 * 3578 * * * 5622 5356 * * 1256 4920 2252 * * 71 154 5340 3712 0 * 1806 486 3955 1000 2237 N 72 * * * 5420 * 4182 * 3013 * 3150 * 708 4290 * * 5515 * * * * 72 174 3141 * 1911 446 * 0 3884 1639 2345 K 73 4290 * 3511 * 5177 * 4222 5757 1995 * * 2594 * 4135 2463 4432 4052 * * * 73 39 * 5237 * * 709 1365 3884 0 2345 T 74 * 4925 * * * * * * * 1970 * 3208 * * * 1487 2356 * * 4279 74 25 * 5879 * * 1824 479 4002 0 1955 L 75 5355 * * 3986 6088 * * 4385 4480 2769 5155 4290 4241 1995 3475 4234 5722 * * 3139 75 35 * 5364 * * 847 1171 4262 0 1853 D 76 * * 1935 3159 * 3887 * * 3963 * 3483 4460 * 4394 * 6222 2027 4224 * * 76 99 5521 4499 3170 170 358 2184 4265 1000 1604 N 77 4158 4632 3290 2887 * * * 4101 3668 * * 6497 1473 6256 4271 5456 6159 * * 4148 77 34 5443 * 0 * 1270 773 4350 1000 1636 I 78 5198 * 2675 5372 4275 5424 * 947 * * * 3537 5247 4895 * * * * * 4261 78 0 * * * * 0 * 4304 0 1284 W 79 * * * * 4388 3139 * * * * * * * 4400 * * * * 338 * 79 102 4188 6207 0 * * * 4383 1000 0 N 80 5641 * 2662 3233 * 3097 * * 5287 * * 1874 * 3495 4401 * 2717 * * 6346 80 0 * * * * 0 * 4446 0 1000 N 81 * * * * * * 4093 * 4512 * * 513 * * 4221 5428 3057 * * * 81 0 * * * * * * 4437 0 0 M 82 * 3203 4417 3771 * * * 4436 * 2698 899 * * 5455 * * 6364 * * * 82 0 * * * * * * 4436 0 0 T 83 * * 4810 * * 4223 * * * 4411 * * 4290 * * * 299 * * * 83 0 * * * * * * 4436 0 0 W 84 * * * * * 3349 * * * 4810 * * * * * * * * 286 4436 84 54 4763 * 0 * * * 4436 1000 0 M 85 * 3238 * * * * 5033 4630 4296 3264 2272 * * 1439 * 4147 * * * 4801 85 0 * * * * * * 4341 0 0 E 86 4147 * * 1508 * * 5375 * 5166 * * 3495 5686 1522 * 4231 5033 * * * 86 0 * * * * * * 4341 0 0 W 87 * * * * * 2817 * 4147 * * * * * * * * * * 319 * 87 0 * * * * * * 4341 0 0 E 88 * * 1871 1288 * * 4194 2819 * * * 4450 * 5166 * 5435 * * * 5376 88 0 * * * * * * 4340 0 0 K 89 * * * 3558 * * * * 1314 4992 5268 * * 4873 1494 * 3917 * * * 89 0 * * * * * * 4286 0 0 E 90 * * 4835 2042 * * 5705 * 1873 2839 * 5167 * 3173 2995 5264 * * * * 90 0 * * * * * * 4286 0 0 I 91 * * * * * * * 1129 * 2668 * * * * * * 3458 1763 * * 91 0 * * * * * * 4286 0 0 S 92 2642 * 2024 6427 * 4880 * 4070 4913 * * 3616 * 5603 3854 1814 * * * * 92 0 * * * * * * 4286 0 0 N 93 4189 * * 5139 6320 * * 3980 * * 4913 787 * * 5167 4847 3459 * * 3743 93 0 * * * * * * 4286 0 0 Y 94 5636 * 5483 * 4624 * 5659 5900 * 1864 * * * 4070 * 4957 3980 5705 6064 1263 94 0 * * * * * * 4286 0 0 T 95 * * 4878 2938 5143 * 3460 * * * 5060 * 6240 3885 * 3927 890 * * * 95 91 * 4031 * * * * 4392 0 0 N 96 3683 * 2435 * * 1800 * * * * * 4010 * 2773 3747 3302 3925 * * * 96 0 * * * * 0 * 4191 0 1000 L 97 * * 5150 3789 * * 3618 3316 6088 3658 * 1824 * 3578 * * 2499 3631 * * 97 0 * * * * * * 4392 0 0 I 98 * * * * * * * 284 * * * * * * * * * 5143 5236 3013 98 0 * * * * * * 4392 0 0 Y 99 * * 4187 4265 4942 * 5375 3995 * * * * * 4925 * 2461 2423 * * 1424 99 0 * * * * * * 4392 0 0 N 100 4071 * 2725 3524 * 3287 * 5038 2901 * * 2644 * 4379 5736 3097 5393 3877 * * 100 0 * * * * * * 4392 0 0 L 101 3585 4031 5294 4771 * * * 5573 * 910 4027 * * 5986 4852 4671 5230 * * 3995 101 0 * * * * * * 4392 0 0 I 102 * * * * * * * 2094 * 385 * * * * * * * * * * 102 0 * * * * * * 4392 0 0 E 103 5230 * * 1230 * 6485 * * 2231 * * 5248 * 2662 5625 * 4852 3578 * * 103 0 * * * * * * 4392 0 0 E 104 4336 * 3107 1510 * * * 4168 3680 5453 * 2825 * 2957 5236 * * 5036 * * 104 0 * * * * * * 4392 0 0 S 105 911 * * * * * * * * * * * * * 2709 1665 * * * * 105 31 5568 * 2000 415 * * 4393 1000 0 Q 106 6352 * * * * * 3199 * 2668 * * * * 868 4488 * * * * 2956 106 0 * * * * * * 4374 0 0 N 107 3702 * 3227 2805 * * * 3074 * 5565 * 2418 5772 4785 5386 6041 2323 4246 * * 107 0 * * * * * * 4370 0 0 Q 108 5500 * * 4705 * * 5106 * * 5202 * * * 715 5149 2471 3929 * * * 108 0 * * * * * * 4365 0 0 Q 109 * * * 2524 * * 5122 * 3884 * * * * 696 3150 * * * * * 109 0 * * * * * * 4365 0 0 E 110 * * 4618 712 * * * * 4264 4871 * 3640 * 2454 * * * * * * 110 0 * * * * * * 4365 0 0 K 111 * * * 3539 * * * * 1073 * * 3496 * 4336 2068 4564 5671 * * * 111 0 * * * * * * 4365 0 0 N 112 * * * * * * * * * 3701 * 115 * * * * * * * * 112 0 * * * * * * 4027 0 0 E 113 * * * 1175 * * * * 3085 5538 3564 * * 3103 * * 4350 2575 * * 113 0 * * * * * * 4026 0 0 T 114 * * * * 3841 * 2446 * 2077 * * 4295 * 2212 3388 * 5404 * * 3014 114 0 * * * * * * 4026 0 0 E 115 3684 * 1389 1285 * * * * 2943 * * * * * * * * * * * 115 0 * * * * * * 3833 0 0 N 116 * * * * 4273 * * * * 176 * 5354 * * * * * 4684 * * 116 0 * * * * * * 3833 0 0 L 117 4849 * * 4904 * * * * 4168 898 * * * 1824 * * 5075 * * 5181 117 0 * * * * * * 3774 0 0 T 118 1770 * * 2018 * * * * 1843 * * * * 3816 * 3555 5308 * * * 118 0 * * * * * * 3768 0 0 L 119 * * * * * * * * * 0 * * * * * * * * * * 119 0 * * * * * * 3807 0 0 C 120 * 0 * * * * * * * * * * * * * * * * * * 120 0 * * 0 * * * 1000 0 0 //