HHsearch 1.5 NAME c9ndpA_ FAM FILE c9ndpA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9ndpA_.a3m DATE Sat Sep 13 11:20:25 2025 LENG 68 match states, 68 columns in multiple alignment FILT 25 out of 27 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.9 EVD 0.4223 0.6587 SEQ >ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEECCCCCEEEHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEEC >ss_conf 96346553655200234554424888799866105562899866320674145353202672133349 >Consensus kxyxtpKkikHxxkkvKLavLkxykVdxnGKvxrlrxeCpxxxCgxGxfMAxHxDRxyCGkCxlTyvx >c9ndpA_ KSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCF >UniRef50_Q9FWV0(92-147:147) Putative uncharacterized protein n=2 Tax=Oryza sativa RepID=Q9FWV0_ORYSJ E=5e-08 s/c=1.05 id=53% cov=81% -AYATPKKGKHEHRKEELAVLRHYRVDDvMGKVERLRLMCPNPECkDVGALMAKHHD------------- >UniRef50_Q3LWK0(24-84:91) Ribosomal protein S27a n=1 Tax=Bigelowiella natans RepID=Q3LWK0_BIGNA E=1e-11 s/c=1.16 id=39% cov=91% ----TPKKISHIRKKVKCSILNIIKINSNGL--QVNEICRNKSCFYSCFLANHSNRNSCGRCGRSYI- >UniRef50_UPI00006CAF49(88-140:189) Ribosomal protein S27a containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CAF49 E=5e-10 s/c=1.24 id=54% cov=79% ----------HRHVHTKLGALAFYKLENNGKVSLQQKGCP--KCGPGIFMAKHYDRHYCGKCHLT--- >UniRef50_A8BNY1(83-134:137) Putative uncharacterized protein n=2 Tax=Giardia intestinalis RepID=A8BNY1_GIALA E=4e-06 s/c=1.02 id=45% cov=78% --------IKHEPKKVRLACLKYYTIKGD-TAEPTREYCPN--CGPGIRIARHADRCHCGRCG----- >UniRef50_Q6A1P6(91-146:177) Putative uncharacterized protein n=1 Tax=Euplotes vannus RepID=Q6A1P6_EUPVA E=4e-14 s/c=1.42 id=42% cov=84% --------IPHKHENIKMRVLSYFEVDKNGKIEKLKQESPEQ---AGCYLADHKDRMHCGKTGYMFY- >UniRef50_B0E930(87-132:139) 40S ribosomal protein S31, putative n=2 Tax=Entamoeba RepID=B0E930_ENTDI E=2e-10 s/c=1.45 id=47% cov=69% -----------------LACLTHYNVTSAGKVERLRKCCANKKCGVACFLAQHKDRLTCGKCH----- >UniRef50_Q98S99(68-112:115) 40S ribosomal protein S27A n=1 Tax=Guillardia theta RepID=Q98S99_GUITH E=4e-06 s/c=1.17 id=52% cov=68% -----------------LRVLSYYHLDQN-KITRILKESPDS---PGCFMANHFNRITCGKTGLTF-- >UniRef50_A2FZV8(62-123:134) Ribosomal protein S27a, putative n=5 Tax=Trichomonas vaginalis RepID=A2FZV8_TRIVA E=0.0001 s/c=0.76 id=42% cov=91% -NFVSKKRVPHQRKKEKLKILKLFKIGKDGSVEAQRKECPH---CKGCFLAKHKDgRQYCGNCHYT--- >UniRef50_A2SR71(2-56:60) 30S ribosomal protein S27ae n=4 Tax=Euryarchaeota RepID=RS27A_METLZ E=3e-05 s/c=0.91 id=48% cov=82% ---AAKKVVKATPKRSEL-----YTVDAQGKATTSHRACP--RCGAGVFMGEHKDRFSCGKCGYT--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 0 * * * * * * * * * * * 1 0 * * * * * * 1666 0 0 S 2 2792 * * * * * * * * * * 1453 * * * 1796 * 2305 * * 2 0 * * * * * * 2201 0 0 Y 3 * * * * 2566 * * * * * * * * * * * * * * 267 3 0 * * * * * * 2159 0 0 T 4 2169 * * * * * * * * * * * * * * 3657 876 2705 * * 4 0 * * * * * * 2291 0 0 T 5 2333 * * * * * * * * * * * * * * 3088 548 * * * 5 0 * * * * * * 2530 0 0 P 6 * * * * * * 3490 * 2139 * * * 548 * * * * * * * 6 0 * * * * * * 2530 0 0 K 7 * * * * * * * * 0 * * * * * * * * * * * 7 0 * * * * * * 2530 0 0 K 8 * * * * * * * * 372 * * * * * 3088 * * 3192 * * 8 0 * * * * * * 2530 0 0 N 9 * * * * * 3631 * 1132 * * * 2560 * * * 3766 * 2186 * * 9 0 * * * * * * 2829 0 0 K 10 * * * * * * * * 493 * * * 2523 * * 3111 * * * * 10 0 * * * * * * 2829 0 0 H 11 3825 * * * * * 181 * * * * * * * 4394 * * * * * 11 104 * 3850 * * * * 2965 0 0 K 12 * * * 2736 * * * 3206 1476 * * * * 4248 2300 * 2985 * * * 12 0 * * * * * 0 2899 0 1000 R 13 * * * * * * 1592 * 2738 * * * 2285 * 1675 * * * * * 13 0 * * * * 0 * 2899 0 1000 K 14 * * * 2825 * * * * 476 * * * * * 3896 * * 3782 * * 14 0 * * * * * * 2965 0 0 K 15 * * * * * * 3782 * 458 4134 * 3800 * * 3825 * * * * * 15 0 * * * * * * 2965 0 0 V 16 * * * 2171 * * * 3800 * * * * * * * 3825 3782 829 * * 16 0 * * * * * * 2965 0 0 K 17 * * * 2860 * * * * 345 * * * * * 3740 * * * * * 17 0 * * * * * * 2965 0 0 L 18 * 3479 * * * * * * * 388 2773 * * * * * * * * * 18 70 * 4404 * * * * 3041 0 0 A 19 737 * * * * 4236 * * 3463 * * * * * 2632 3399 * * * * 19 0 * * * * * 0 2995 0 1000 V 20 3305 3045 * * * * * 2835 * 4461 * * * * * * 4938 838 * * 20 0 * * * * * 0 2995 0 1000 L 21 * * * * * * * * * 0 * * * * * * * * * * 21 0 * * * * * 0 3010 0 1000 K 22 4266 * * * * * * * 984 * * 2938 * 4798 3464 2889 4311 * * * 22 0 * * * * * 0 3010 0 1000 Y 23 * * * * 2274 * 2705 3455 * 3490 * * * * * * * * * 1121 23 0 * * * * 0 * 3010 0 1000 Y 24 * * * * 2446 * 4154 3536 * * * * * * * * * * * 569 24 0 * * * * * * 3051 0 0 K 25 * * * 3179 * * 4435 * 698 * * 4402 * * 4606 4794 3287 * * * 25 0 * * * * * * 3065 0 0 V 26 * * * * * * * 1780 * 3396 * * * * * * * 704 * * 26 0 * * * * * * 3065 0 0 D 27 * * 748 4358 * 3052 * * 4089 * * 3558 * * * * 3447 * * * 27 53 * 4794 * * * * 3065 0 0 E 28 3722 * 3630 2091 * 2872 * * 2308 * * 4331 * 4235 * 2578 * * * * 28 63 4551 * 0 * 0 * 3056 1000 1000 N 29 4402 * 1958 5107 * * 4739 * * * 4606 968 * 4518 * 4927 * * * * 29 229 * 2766 * * * * 3065 0 0 G 30 * * 4290 * * 76 * * * * * * * * * * * * * * 30 76 4290 * 2000 415 0 * 2923 1000 1756 K 31 * * * * * * * * 372 3558 * * * * * 3581 4089 * * * 31 128 * 3558 * * * * 3065 0 0 I 32 3131 * * * * * * 1297 * * * * * * * * * 1062 * * 32 0 * * * * * 0 2868 0 1000 S 33 * * * 1468 4632 * 3639 * 3232 * * * * 4848 * 2891 2348 4453 * * 33 57 * 4680 * * 0 * 2868 0 1000 R 34 4531 * * * * * * * 3071 4326 * 3970 3275 3536 1031 * 4468 * * * 34 0 * * * * 0 * 3051 0 1000 L 35 * * * * * * * 4495 * 990 * * * 3086 4149 4456 3320 2918 * * 35 85 * 4135 * * * * 3102 0 0 R 36 * 4066 * * * * 4347 * 3470 3511 * 3617 * 4447 771 * * * * * 36 0 * * * * * 0 3039 0 1000 R 37 * * 4569 2813 * * * * 1616 4524 * * * 4293 1577 * * * 4066 * 37 0 * * * * * 0 3039 0 1000 E 38 4347 4336 3508 882 * 4447 * 3617 * * 4524 * * 4671 * * * * * 4040 38 0 * * * * * 0 3039 0 1000 C 39 * 306 * * * * * * * * * * * * 4172 2880 * * * * 39 58 * 4667 * * * 0 3071 0 1000 P 40 4374 * * 4827 * * * * * 4312 * * 645 4866 3696 5055 3551 * * * 40 151 * 3330 * * * 0 3044 0 1367 S 41 * * 3227 4127 * 3378 4473 * * * * 1081 * 3634 * 2820 * * * * 41 257 * 2618 * * 1920 443 2955 0 1873 D 42 4264 * 2342 2569 * * * * 2613 * * * 2448 3831 * 2596 * * * * 42 254 * 2631 * * 1455 654 2907 0 2306 E 43 * * * 1847 * * * * 2686 * * 3138 * 4128 3985 2191 3870 4464 * * 43 0 * * * * 1552 602 2835 0 2356 C 44 * 109 * * * * * * * 3779 * * * * * * * * * * 44 70 4395 * 0 * 1383 698 2965 1000 1912 G 45 4528 2565 4461 * 3732 740 * * * 3870 * * * * * * * * * * 45 0 * * * * 0 * 3016 0 1581 A 46 1394 * * * * 4995 * * 3854 * 4059 * 2162 * 4560 * * 2999 * 3878 46 0 * * * * * * 3155 0 0 G 47 4515 * * * * 272 * * * * * 4059 * * * 3878 * * * * 47 77 * 4265 * * * * 3155 0 0 V 48 4588 1798 * * * * * 3198 * * * * * * * 4667 3007 1329 * * 48 0 * * * * * 0 3122 0 1000 F 49 * * * * 517 * * * * 3631 * * * * 3956 * * 3265 * 4264 49 0 * * * * * 0 3122 0 1000 M 50 * * * * * * * 3956 * 2090 513 * * * * * * * * * 50 0 * * * * 0 * 3122 0 1000 A 51 254 * * * * 2632 * * * * * * * * * * * * * * 51 0 * * * * * * 3155 0 0 S 52 4560 * 4368 3538 * 4265 * * 2725 * * 2697 * 3109 3998 2255 4710 4666 * * 52 0 * * * * * * 3155 0 0 H 53 * * * * * * 58 * * * 4666 * * * * * * * * * 53 0 * * * * * * 3155 0 0 F 54 3412 * * 3687 1843 * 4637 * 1840 4604 * 4560 * * * 3255 * * * 4576 54 0 * * * * * * 3155 0 0 D 55 * * 298 * * * * * * * * 2421 * * * * * * * * 55 108 3795 * 0 * * * 3155 1121 0 R 56 * * * * * * * * * * 4231 * * * 79 * * * * * 56 0 * * * * * * 3114 0 0 H 57 * 3952 4525 5331 4292 * 1405 4439 4555 2755 4324 3834 * 4714 * * 4518 * * * 57 0 * * * * * * 3114 0 0 Y 58 * * * * * * 3126 * * * * * * * * 3045 2927 * * 660 58 0 * * * * * * 3114 0 0 C 59 * 159 * * * * * * * * * * * * * * * * * 3258 59 0 * * * * * * 3114 0 0 G 60 4538 * * * * 124 * * * * * * * * * 4658 * * * * 60 0 * * * * * * 3114 0 0 K 61 * * * * * * * * 597 * * 3775 * * 1912 * * * * * 61 0 * * * * * * 3084 0 0 C 62 * 226 * * * * * * * * * * * * * * 2783 * * * 62 0 * * * * * * 3084 0 0 C 63 * 3467 * * * 1375 1298 * * * * * * 4512 * 4395 5265 * * * 63 0 * * * * * * 3084 0 0 L 64 * * 4581 * * * * * * 903 * * 3831 * 3435 3550 * * * 2512 64 0 * * * * * * 2960 0 0 T 65 4289 * * * * * * * * * 3930 * * * * 3435 415 4620 * * 65 0 * * * * * * 2960 0 0 Y 66 * * * * 2636 * * * * 2528 3932 * * * * * * * * 736 66 0 * * * * * * 2766 0 0 C 67 * 4074 * * * * * 2131 * * * * * * * * * 1091 3208 2895 67 0 * * * * * * 2680 0 0 F 68 * * * * 1163 * * * * * * * * * * * * * * 854 68 0 * * 0 * * * 1887 0 0 //