HHsearch 1.5 NAME c9nbyT_ FAM FILE c9nbyT_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9nbyT_.a3m DATE Sat Jan 24 11:31:20 2026 LENG 128 match states, 128 columns in multiple alignment FILT 61 out of 63 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.6 EVD 0.4060 -1.0407 SEQ >ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 9025534444568899999999999999999999747679999999999652344455227785503435530332357666552216511888999999 7669999999999999999999997239 >Consensus xxlgxlxaagsxmGaasxxltvqxxxllxgiltvwGiKxLqaRvxalExylkdQxllxxwGCxxkxiChTxvpwnxswxnxsxxxiWxNmTWqqWerxIx nytxxIxxlLeeaqxQQekNxxxLxxLd >c9nbyT_ MFLGFLGAAGSTMGAASMTLTVQARNLLSGILTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTSVPWNTSWSNKSLDKIWNNMTWMEWEREID NYTSLIYTLLEESQNQQEKNEQELLELD >UniRef50_Q3Y655(27-106:143) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q3Y655_9HIV1 E=3e-09 s/c=0.79 id=41% cov=62% --------------------------------------------SALERYLKDQQLLGIWGCSGNSSAPLLCLGTLV-GVINLSMIFGRTCLgCSGIEKL SNYTNTIYKLLEDSQIQQDNNEKNF---- >UniRef50_Q64G54(17-109:139) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G54_9HIV1 E=4e-16 s/c=0.92 id=32% cov=73% -----------------------------------GIKQLQTRVLALGKIPKGSTAPRNLGLLWKTHLHHCCAVESSWSNKSQGAIWvTRLGWSAIEKLI ITQT-HYTGCLKNRKTSRNKLKRDLLALD >UniRef50_P22380(583-716:821) Transmembrane protein gp41 n=133 Tax=Simian immunodeficiency virus RepID=ENV_SIVGB E=1e-34 s/c=1.10 id=44% cov=91% --------AGSAMGSVSVALTVQSQSLVTGIveqqkqllklieqqsellkLTIWGVKNLQTRLTSLENYIKDQALLSQWGCSWAQVCHTSVEWT----NT SITPNWTSETWKEWETRTDYLQQNITEMLKQAYDREQRNTYELQKL- >UniRef50_Q64FP6(39-115:144) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q64FP6_9HIV1 E=1e-09 s/c=0.84 id=37% cov=38% --------------------------------------------------------------------------------NPLNEIWNNMTWQPWDKEIS NFHTDIYSLIEDRRTSRKRMNRTYWHLD >UniRef50_Q64G66(29-98:98) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G66_9HIV1 E=2e-16 s/c=1.24 id=46% cov=55% -------------------------------------------VLAIKKYLKNQPLLGISGCSCKTHLHHCCTLGLYWSLQSQKKIQNHITYMQWNKKIS NYTGTIYKLLNES--------------- >UniRef50_Q70IG7(526-672:864) Envelope glycoprotein gp160 n=3 Tax=Primate lentivirus group RepID=Q70IG7_SIVCZ E=4e-39 s/c=1.10 id=46% cov=99% -LIGFLSAAGTVMGAVGTGLAVQSRDLLAGIvqqqqellraveghsallqLSVWGIKNLNARLTAIEKYLKDQALLNEWGCAWKQICHTSVEWSNQSIPg lALYQPDFQNMTWQQWETDIAALFGNVSDALKKAQAQQERNVHEVQSL- >UniRef50_Q99FH6(517-659:837) Envelope glycoprotein n=1 Tax=Simian immunodeficiency virus RepID=Q99FH6_SIVCZ E=4e-32 s/c=0.97 id=47% cov=97% -ILALLSGAGAAMGSASVALTIQAQSlngrasassnrmLLKLVetqsallqLTVWGVKNLQVRVATIEGYLEEQAKLASIGCANMQICRTIVPWNKTWGE ---EDPWQNMTWKQWHERVRNYTDIIEADLVEAYDLQEENEKKLAEL- >UniRef50_Q9DKV4(562-706:849) Envelope n=25 Tax=Ovine/caprine lentivirus group RepID=Q9DKV4_CAEV E=2e-19 s/c=0.67 id=30% cov=95% -IMAIVAAAGASLGVAnaiqqsytrdavqtlANATAVQQQVLEASYAMIQhvakGIRILEARVARMEVMMDRMMLYQEVDCwHYHQYCVTS-----TRAD IVNYINWtrfkDNCTWQEWEREISAHEGNITILLKESARITQLAQQKVQRI- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * 3426 * * * * 887 4132 * * * * * * 1693 * * 1 0 * * * * * * 1731 0 0 F 2 * * * * 714 * * 1995 * 3145 * * * * * * * 5237 * * 2 0 * * * * * * 2666 0 0 L 3 * * * * * * * 3690 * 411 2904 * * * * * * 4760 * * 3 0 * * * * * * 2666 0 0 G 4 2115 * * * * 379 * * * * * * * * * * * * * * 4 0 * * * * * * 2666 0 0 F 5 * * * * 632 * * 2904 * 2830 * * * * * * * 3635 * * 5 0 * * * * * * 2666 0 0 L 6 * * * * * * * * * 207 * * * * * * * 2904 * * 6 0 * * * * * * 2666 0 0 G 7 2162 * * * * 1571 * * * * * * * * * 1184 * * * * 7 0 * * * * * * 2666 0 0 A 8 452 * * * * 4053 * * * 4132 * * * * * * 2720 * * * 8 0 * * * * * * 2666 0 0 A 9 0 * * * * * * * * * * * * * * * * * * * 9 0 * * * * * * 2696 0 0 G 10 * * * * * 0 * * * * * * * * * * * * * * 10 0 * * * * * * 2732 0 0 S 11 2380 * * * * 5036 * * * * * * * * * 716 2570 * * * 11 0 * * * * * * 2802 0 0 T 12 1244 * * * * * * * * * * * * * * 2672 1410 4488 * * 12 0 * * * * * * 2802 0 0 M 13 * * * * * 4581 * * * 3151 242 * * * * * * * * * 13 0 * * * * * * 2862 0 0 G 14 * * * * * 39 * * * * * * * * * 5215 * * * * 14 0 * * * * * * 2862 0 0 A 15 769 * * * * * * * * 4627 * * * 4581 * 3071 3333 3151 * * 15 0 * * * * * * 2862 0 0 A 16 613 * * * * * * * * 4581 * * * * 4524 * * 1940 * * 16 172 3151 * 3907 100 * * 2862 1000 0 S 17 1511 * * * * 4529 * * * 4581 * * * * * 826 * * * * 17 0 * * * * * * 2862 0 0 M 18 * * * * * * * 3257 * 4556 4735 3151 * * * 4581 1226 2099 * * 18 0 * * * * * * 2862 0 0 T 19 881 * * * * 3555 * 3770 * * * * * * * * 2106 3913 * * 19 0 * * * * * * 2862 0 0 L 20 * * * * * * * 4581 * 242 * * * * * * 3151 * * * 20 0 * * * * * * 2862 0 0 T 21 2426 * * * * * * * * * * * * * * 4308 471 4581 * * 21 0 * * * * * * 2862 0 0 V 22 2933 * * * * 5536 * 3169 * 4721 * * * 4581 * * * 607 * * 22 0 * * * * * * 2862 0 0 Q 23 * * * * * * * * * * * * * 56 4726 * * * * * 23 0 * * * * * * 2862 0 0 A 24 1649 * * * * * * * * * * * * 2696 * 1219 3363 * * * 24 0 * * * * * * 2862 0 0 R 25 * * * * * * 3946 * * * * 4647 * 1334 1098 4997 * * * * 25 0 * * * * * * 2970 0 0 N 26 4678 * 4558 * * 5250 2317 * * * * 3563 * 2723 * 2402 2644 3235 * * 26 63 4557 * 3585 126 * * 2970 1000 0 L 27 * * * * * * * * * 148 * * * * * 5475 * 3732 * * 27 0 * * * * * * 2970 0 0 L 28 * * * 3235 * * * * * 220 * * * * * * * 4830 * * 28 0 * * * * * * 2970 0 0 S 29 1200 * * * * * 5157 * 2680 * * * * 4678 4647 1908 4830 * * * 29 72 * 4361 * * * * 2970 0 0 G 30 4581 * * * * 320 * * * 4480 * * * * * 3151 * * * * 30 0 * * * * * 0 2862 0 1000 I 31 * * * * * * * 247 * * * * * * * * * 4480 * 3151 31 2941 201 * 4130 85 0 * 2862 2633 1000 L 32 3307 * * * * * * * * 154 * * * * * * * * * * 32 0 * * * * * * 2987 0 0 T 33 * * * * * * * * * * 3307 * * * * 1975 633 * * * 33 0 * * * * * * 2987 0 0 V 34 5105 * * * * * * 1517 * * * * * * * * * 686 * * 34 0 * * * * * * 2978 0 0 W 35 * * * * * * * * * * * * * 3307 * * * * 167 6881 35 154 3307 * 2000 415 * * 2987 1000 0 G 36 * * * * * 0 * * * * * * * * * * * * * * 36 0 * * * * * * 3275 0 0 I 37 5859 * * * * * 3972 671 * * * * * * * * 4194 2082 * * 37 0 * * * * * * 3275 0 0 K 38 * * * * * * * * 278 * * * * * 2511 * * * * * 38 0 * * * * * * 3275 0 0 Q 39 * * * * * * * 3129 * * * 1684 * 977 * * 3914 * * * 39 0 * * * * * * 3275 0 0 L 40 3919 * * * * * * * * 99 * * * * * * * * * * 40 0 * * * * * * 3278 0 0 Q 41 * * * 3130 * * 3758 * * * * 3226 3919 801 3945 * * * * * 41 0 * * * * * * 3278 0 0 A 42 429 * * * * 3919 * * * * * * * * * * 2691 4790 * * 42 0 * * * * * * 3278 0 0 R 43 * * * * * * * * 3581 * * * * * 126 * * * * * 43 0 * * * * * * 3278 0 0 V 44 * * * * * * * 5375 * 2002 4841 * * * * 3941 * 675 * * 44 0 * * * * * * 3332 0 0 L 45 2770 * * * * * * * * 888 * * * 5372 * 3904 2171 * * * 45 0 * * * * * * 3353 0 0 A 46 546 * * * * 2859 * * * * * * * * 3162 5581 4492 * * * 46 19 * 6292 * * * * 3348 0 0 V 47 * 3998 * * * * * 2186 * 1314 4082 * * * * 5494 * 2326 * 4840 47 0 * * * * * 0 3535 0 1000 E 48 * * * 321 * 3300 * * 4608 * * * * * 4840 * * * 5494 * 48 0 * * * * * 0 3535 0 1000 R 49 4286 * * 5801 * 3672 * * 1315 * * 5556 * * 1793 6576 3818 4082 * * 49 32 5494 * 0 * * 0 3535 1000 1000 Y 50 * * * * 4784 * * 2874 * 3412 4082 * * * * * 3972 * * 712 50 0 * * * * * 0 3535 0 1000 L 51 * * * * * * * 3664 * 728 4012 * 3116 * * 5416 * 3799 * 4475 51 0 * * * * * 0 3765 0 1000 R 52 5470 * 3120 3091 * 4475 * * 1063 * * * * 3592 2850 * * * * * 52 0 * * * * * 0 3765 0 1000 D 53 * * 757 4955 * 3116 6267 4475 * * * 3509 * * 3120 * * * * * 53 0 * * * * * 0 3765 0 1000 Q 54 * * * * * * * * * * 3120 4475 * 465 * 3116 * * * * 54 0 * * * * * 0 3765 0 1000 Q 55 2249 * * 6376 * * * * * 5514 3120 * 4459 1430 * 3534 3116 5483 * * 55 0 * * * * * 0 3765 0 1000 L 56 3116 * * * 6667 * * 4038 3569 911 * * * 4791 3974 4475 * 4237 * * 56 0 * * * * * 0 3765 0 1000 L 57 * * * * * * * * * 525 5076 * 3116 * * 4475 * * * 3120 57 0 * * * * * 0 3765 0 1000 G 58 4291 * * * * 1959 4237 * 4019 * * 2582 * 4012 2423 3102 * 4475 * * 58 0 * * * * * 0 3765 0 1000 I 59 6005 * 3210 2798 4475 * * 2068 * 2977 6731 3210 * 3590 * 3336 5470 * * * 59 0 * * * * * 0 3765 0 1000 W 60 * * * * 5470 4475 * 4955 * 2062 * * * * * 4459 * 4012 879 6731 60 0 * * * * 0 * 3765 0 1000 G 61 * * 3110 * * 178 * * * * * * * * * * * * * * 61 0 * * * * * * 3894 0 0 C 62 * 314 * * 5855 6624 * * * 2570 * * * * * * * * * * 62 178 3110 * 0 * * * 3894 1240 0 S 63 2045 * * 4117 * * 3110 * 4533 2570 * * * 5833 * 1494 * * * * 63 0 * * * * * * 3894 0 0 G 64 * 4316 6047 * 3259 1633 * * * 4579 * 3928 * * * * * * 1832 3068 64 11 * 7014 * * * * 3946 0 0 K 65 5535 * * * * * 3954 * 691 * 4347 5005 * 4188 3207 6804 4575 * * * 65 109 3782 * 0 * * 0 3943 1576 1000 L 66 5873 * * * * * 2873 6401 * 2307 * * * 1419 * 4036 2454 6040 * * 66 0 * * * * * 0 3943 0 1000 I 67 * * * * * * 2730 1472 * 4513 * * * * * 3587 * 2042 * 3071 67 0 * * * * * 0 3957 0 1000 C 68 4099 421 * * * * 4513 * * 2730 * * * * * * * * * * 68 0 * * * * * 0 3957 0 1000 C 69 * 6650 * * * * 952 * * * * * 3724 * 5213 * 2432 3250 * 3641 69 0 * * * * * 0 4025 0 1000 T 70 * 4662 * * * * 2777 * * 3895 * * * * * 4480 509 * * * 70 0 * * * * * 0 4082 0 1000 S 71 3908 2432 6832 * * * * 5164 * 4457 5526 2791 * * 5959 2009 2272 * 5155 * 71 153 * 3314 * * * 0 4082 0 1000 V 72 4579 1951 * * * * * * * * * * * * * * * 516 * * 72 34 5432 * 0 * * 0 3677 1000 1502 P 73 4218 * * 3608 * * * * 4520 3138 * * 719 * * * 3330 * * * 73 65 * 4508 * * * 0 3677 0 1502 W 74 * * * * * 2244 * * * 3956 * * * * * * * 4691 544 * 74 25 * 5881 * * * 0 3746 0 2023 N 75 * * * 3673 * 3953 * 5808 5739 * * 1024 * 4800 * 4399 2026 * * * 75 49 * 4907 * * * 0 3756 0 2102 T 76 4997 * 4127 4361 5645 * * 5002 4508 2311 * 3262 * 4897 5165 2422 4071 3618 * 3776 76 105 * 3828 * * 1336 728 3823 0 2381 S 77 3452 * * * * * * * * * * * * 4096 * 1581 1926 2521 * 3670 77 144 * 3395 * * 1910 446 4070 0 2151 W 78 * 4855 * * * 3067 * * * * * * * 5354 3257 4386 * * 579 * 78 145 4432 4333 0 * 1584 586 3814 1456 2499 S 79 3509 * * 4740 * 2039 * 3314 * * * 6098 4808 * * 1323 5108 4274 * * 79 74 5558 5116 0 * 1840 473 4001 1000 2289 N 80 * * 4820 3396 * 4265 * * * 4110 * 806 4550 * * 5646 * 2999 * * 80 218 3488 4293 2615 257 * 0 3976 1527 2211 K 81 4370 * 4243 * * * 4362 2487 2190 * * 2880 * 4004 2937 5153 4097 4740 * * 81 111 5174 4431 0 * 599 1557 4074 1000 2419 S 82 4895 * 4345 * * * * * 4503 3576 * 2429 5381 * * 1241 3157 5248 * 5804 82 88 4892 5293 1000 1000 * 0 4176 1000 2125 L 83 5314 * 5068 4700 6181 * * 3692 4451 1793 4953 3582 4837 2393 * * 4819 * * 3257 83 0 * * * * 511 1745 4158 0 2177 D 84 * * 2284 3221 * 3840 * * 3909 * * 4386 * 3183 4528 3922 2141 * * 4129 84 64 4528 * 0 * 635 1491 4231 1000 1341 K 85 4091 4741 3394 2823 * * * 5326 3455 * 4243 * 1548 6245 * 4508 6209 4995 * 4197 85 0 * * * * * 0 4259 0 1000 I 86 5212 * 2642 5416 * 5409 * 795 * * * 2895 5307 5072 * * * * * * 86 0 * * * * * 0 4259 0 1000 W 87 * * * * 3460 * * * * * * * * 4216 * * * * 225 * 87 194 3158 6191 1694 533 0 * 4302 1795 1000 N 88 5554 * 2230 3252 * 2562 * * 5333 * * 1872 * 3674 * * 3281 * * 6366 88 0 * * * * 0 * 4332 0 1000 N 89 * * * * * * 4045 * 4549 * * 427 * * 3210 5465 5502 * * * 89 0 * * * * * * 4323 0 0 M 90 * 4180 4423 3774 * * * 4300 * 2696 893 * * 5424 * * 4107 * * * 90 0 * * * * * * 4370 0 0 T 91 * 4355 4540 * * 4129 * * * * * * * * * * 233 * * * 91 0 * * * * * * 4370 0 0 W 92 * * * * * * * * * 3445 * * * * * * * * 222 4300 92 144 3396 * 0 * * * 4370 1448 0 M 93 * 4221 * * * * 5050 4560 4213 3292 2253 * * 1307 * 4071 * * * 4495 93 0 * * * * * * 4303 0 0 E 94 4071 * * 1480 * * 5410 * 5132 * * 4495 5497 1397 * 4221 5050 * * * 94 0 * * * * * * 4303 0 0 W 95 * * * * * 3351 * 4071 * * * * * * * * * * 247 * 95 0 * * * * * * 4303 0 0 E 96 * * 1865 1156 * * 4134 3372 * * * 4344 * 5170 * 5460 * * * 5416 96 0 * * * * * * 4260 0 0 R 97 * * * 3048 * * * * 1543 4949 5259 * * 4806 1394 * 4031 * * * 97 0 * * * * * * 4408 0 0 E 98 * * 4995 1763 * * 5577 * 2191 2768 * 5183 * 3152 3024 5370 * * * * 98 0 * * * * * * 4408 0 0 I 99 * * * * * * * 980 * 3309 * * * * * * 3478 1726 * * 99 0 * * * * * * 4408 0 0 D 100 3424 * 1991 4439 * 4721 * 4082 5044 * * 3540 * 5413 3801 1734 * * * * 100 0 * * * * * * 4408 0 0 N 101 3973 * * 5181 6236 * * * * * 5044 721 * 4930 5183 4850 3452 * * 3790 101 0 * * * * * * 4408 0 0 Y 102 5476 * 5378 * 4504 * 3940 5702 * 1914 * * * 4082 * 4766 * 5577 6077 1224 102 0 * * * * * * 4408 0 0 T 103 * * 4904 2592 4994 * 4982 * * * 5103 * 6193 3920 * 3865 836 * * * 103 97 * 3943 * * * * 4097 0 0 S 104 3702 * 2489 * * 1538 * * * * * 3844 * 2732 * 3204 3798 * * * 104 0 * * * * 0 * 3851 0 1000 L 105 * * 4982 3829 * * 3580 3313 6092 3709 * 1650 * 5459 * * 2345 3568 * * 105 0 * * * * * * 4097 0 0 I 106 * * * * * * * 233 * 5177 * * * * * * * 4994 5327 3943 106 0 * * * * * * 4097 0 0 Y 107 * * 4242 4323 4968 * 5492 * * * * * * 4977 * 2247 2335 * * 1313 107 0 * * * * * * 4097 0 0 T 108 4096 * 2696 3492 * 3257 * 4663 2707 5177 * 3445 * 4365 5799 3073 5088 3902 * * 108 0 * * * * * * 4097 0 0 L 109 3572 3943 5318 4646 * * * 5459 * 768 4050 * * 6031 4867 4661 5248 * * * 109 0 * * * * * * 4097 0 0 L 110 * * * * * * * 2083 * 389 * * * * * * * * * * 110 0 * * * * * * 4097 0 0 E 111 5248 * * 1197 * 6483 * * 2595 * * 4710 * 2642 4435 * 4867 3611 * * 111 0 * * * * * * 4097 0 0 E 112 4304 * 2945 1320 * * * 4126 3559 5517 * 3750 * 2966 5321 * * 5172 * * 112 0 * * * * * * 4097 0 0 S 113 843 * * * * * * * * * * * * * 3366 1534 * * * * 113 0 * * * * * * 4097 0 0 Q 114 3854 * * * * * 3092 * 3433 * * * * 910 3984 * * * * 2992 114 0 * * * * * * 4080 0 0 N 115 3589 * 3136 2867 * * * 2907 * 5365 * 2507 5930 4936 4112 6074 2730 4059 * * 115 0 * * * * * * 4079 0 0 Q 116 * * * 4856 * * 4675 4677 * 5186 * * * 669 5222 2902 3835 * * * 116 0 * * * * * * 4223 0 0 Q 117 * * * 2405 * * 5098 * * * * * * 738 2873 * 4445 * * * 117 0 * * * * * * 4218 0 0 E 118 * * 4327 873 * * * * 3830 4581 * 3570 * 2265 * * * * * * 118 0 * * * * * * 4218 0 0 K 119 * * * 3447 * * * * 1351 4445 * 3218 * 4367 1959 4674 5795 * * * 119 0 * * * * * * 4218 0 0 N 120 4103 * * * * * * * * 3866 4152 364 * * * * 4647 * * * 120 0 * * * * * * 4098 0 0 E 121 * * * 1541 * * * * 3251 3692 3782 4152 * 2670 * * 4587 2772 * * 121 0 * * * * * * 4098 0 0 Q 122 * * 4042 * 4059 * 2650 * 2143 * * 4599 * 2284 2829 * * * * 3235 122 0 * * * * * * 4098 0 0 E 123 3500 * 1904 1581 * * * * 2597 * * 4361 * 4647 * * 4152 * * * 123 0 * * * * * * 4098 0 0 L 124 * * * * 3476 * * * * 507 * * * * * * * 3483 * 3096 124 0 * * * * * * 4098 0 0 L 125 5155 * * 5089 * * * * 4452 1303 * * * 1375 * * 5359 * 4099 5425 125 0 * * * * * * 4001 0 0 E 126 2424 * * 2146 * * 4068 * 1748 * * * * 4048 3360 3787 * * * * 126 0 * * * * * * 3935 0 0 L 127 * * * * * * * 3980 * 94 * * * * * * * * * * 127 0 * * * * * * 3872 0 0 D 128 * * 364 * * * * * * * * 2166 * * * * * * * * 128 0 * * 0 * * * 2886 0 0 //