HHsearch 1.5 NAME c9nbtL_ FAM FILE c9nbtL_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9nbtL_.a3m DATE Sat Jan 24 13:11:04 2026 LENG 128 match states, 128 columns in multiple alignment FILT 61 out of 63 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.7 EVD 0.4057 -1.1950 SEQ >ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 9378998964235677888998898889999887578679999999999751243454206452210125631232456566103314522787789999 8669999999999999999999997239 >Consensus xxxxlgxlxaagsxmgaasxxltvqxqxLLxltvwGiKxLqaRvxaxExylkdqxllxxwGCxxkxichtxVpwnxswxnxsxxxiWxNmTWqqWekxIx nxtxxIyxlLeeaqxqqekNxxeLxxLd >c9nbtL_ GAMFLGFLGAAGSTMGAASMTLTVQARNLLSLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTSVPWNTSWSNKSLDKIWNNMTWMEWEREID NYTSLIYTLLEESQNQQEKNEQELLELD >UniRef50_Q99FH6(517-659:837) Envelope glycoprotein n=1 Tax=Simian immunodeficiency virus RepID=Q99FH6_SIVCZ E=1e-40 s/c=1.17 id=48% cov=95% ---ILALLSGAGAAMGSASVALTIQAQSlngrasassnrmllklvetqsaLLQLTVWGVKNLQVRVATIEGYLEEQAKLASIGCANMQICRTIVPWNKTW GE---EDPWQNMTWKQWHERVRNYTDIIEADLVEAYDLQEENEKKLAEL- >UniRef50_B7UES4(548-677:843) Env protein n=1 Tax=Simian immunodeficiency virus - olc RepID=B7UES4_SIVCZ E=6e-40 s/c=1.26 id=48% cov=86% ------------SAMGTVSTILTVQSSHLLAgivrqqkhmlemiekqqellkLTIWGVKNLQARLLGVEKYLKDQALLKQWGCEFMQVCHTTVPWNYTQS -----PDWGNDTWLKWQRKVDNLTQEIDDRLTIAYQEQQRNQYELQR-- >UniRef50_Q64G66(29-98:98) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G66_9HIV1 E=3e-09 s/c=0.90 id=46% cov=55% -------------------------------------------VLAIKKYLKNQPLLGISGCSCKTHLHHCCTLGLYWSLQSQKKIQNHITYMQWNKKIS NYTGTIYKLLNES--------------- >UniRef50_Q3Y655(5-106:143) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q3Y655_9HIV1 E=1e-12 s/c=0.73 id=42% cov=61% --------------------------------------------SALERYLKDQQLLGIWGCSGNSSAPLLCLGTLV-GVINLSMIFGRTCLgCSGIEKL SNYTNTIYKLLEDSQIQQDNNEK------ >UniRef50_Q9DKV4(560-706:849) Envelope n=25 Tax=Ovine/caprine lentivirus group RepID=Q9DKV4_CAEV E=7e-23 s/c=0.73 id=26% cov=98% -LAIMAIVAAAGASLGVAnaiqqsytrdavqtlANATAVQQQVLeasyamIQHVAKGIRILEARVARMEVMMDRMMLYQEVDCW--HYHQYCVTSTRADI VNyiNWTRFKDNCTWQEWEREISAHEGNITILLKESARITQLAQQKVQRI- >UniRef50_Q64G85(15-116:145) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G85_9HIV1 E=2e-17 s/c=0.88 id=43% cov=73% -----------------------------------GIKQLHARVLALERYLKDQQLLRDLGLLWKTHLHHCCAlGTVVGGNRTKDYIWDNMTWDAGGIEK LAITQTQYtGWLEGIANPAGNKEKDLLALD >UniRef50_Q64G54(17-109:139) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G54_9HIV1 E=1e-16 s/c=0.94 id=32% cov=73% -----------------------------------GIKQLQTRVLALGKIPKGSTAPRNLGLLWKTHLHHCCAVESSWSNKSQGAIWvTRLGWSAIEKLI ITQT-HYTGCLKNRKTSRNKLKRDLLALD >UniRef50_Q70IG7(526-672:864) Envelope glycoprotein gp160 n=3 Tax=Primate lentivirus group RepID=Q70IG7_SIVCZ E=2e-38 s/c=1.09 id=46% cov=98% ---LIGFLSAAGTVMGAVGTGLAVQSRDllagivqqqqellraveghsaLLQLSVWGIKNLNARLTAIEKYLKDQALLNEWGCAWKQICHTSVEWSNQSI PglALYQPDFQNMTWQQWETDIAALFGNVSDALKKAQAQQERNVHEVQSL- >UniRef50_Q64FP6(13-115:144) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q64FP6_9HIV1 E=5e-10 s/c=0.63 id=37% cov=38% --------------------------------------------------------------------------------NPLNEIWNNMTWQPWDKEIS NFHTDIYSLIEDRRTSRKRMNRTYWHLD # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1829 0 0 A 2 1145 * * * * * * 3679 * 1562 2932 * * * * * * * * * 2 0 * * * * * * 2283 0 0 M 3 2209 * * * 3845 * * * * 1407 4663 * * * * * 3679 2188 * * 3 0 * * * * * * 2283 0 0 F 4 * * * * 794 * * 1948 * 2870 * * * * * * * 5205 * * 4 0 * * * * * * 2738 0 0 L 5 * * * * * * * 3290 * 478 2797 * * * * * * 4799 * * 5 0 * * * * * * 2738 0 0 G 6 2086 * * * * 387 * * * * * * * * * * * * * * 6 0 * * * * * * 2738 0 0 F 7 * * * * 630 * * 2797 * 2892 * * * * * * * 3729 * * 7 0 * * * * * * 2738 0 0 L 8 * * * * * * * * * 224 * * * * * * * 2797 * * 8 0 * * * * * * 2738 0 0 G 9 2075 * * * * 1692 * * * * * * * * * 1142 * * * * 9 0 * * * * * * 2738 0 0 A 10 454 * * * * 4165 * * * 4068 * * * * * * 2696 * * * 10 0 * * * * * * 2738 0 0 A 11 0 * * * * * * * * * * * * * * * * * * * 11 0 * * * * * * 2762 0 0 G 12 * * * * * 0 * * * * * * * * * * * * * * 12 0 * * * * * * 2762 0 0 S 13 2212 * * * * 5039 * * * * * * * * * 770 2579 * * * 13 0 * * * * * * 2802 0 0 T 14 1312 * * * * * * * * * * * * * * 2870 1357 3836 * * 14 0 * * * * * * 2802 0 0 M 15 * * * * * * * * * 2939 202 * * * * * * * * * 15 0 * * * * * * 2866 0 0 G 16 * * * * * 43 * * * * * * * * * 5091 * * * * 16 0 * * * * * * 2866 0 0 A 17 708 * * * * * * * * 4630 * * * * * 3143 3266 2939 * * 17 0 * * * * * * 2866 0 0 A 18 596 * * * * * * * * * * * * * 4357 * * 1788 * * 18 202 2939 * 3907 100 * * 2866 1000 0 S 19 1592 * * * * 3917 * * * * * * * * * 732 * * * * 19 0 * * * * * * 2957 0 0 M 20 * * * * * * * 3228 * 4527 4620 3004 * * * * 1137 2122 * * 20 0 * * * * * * 2957 0 0 T 21 855 * * * * 3917 * 3739 * * * * * * * * 2070 3882 * * 21 0 * * * * * * 2957 0 0 L 22 * * * * * * * * * 250 4850 * * * * * 3004 * * * 22 0 * * * * * * 2957 0 0 T 23 2186 * * * * * * * * * * * * * * 4244 530 4850 * * 23 0 * * * * * * 2957 0 0 V 24 2885 * * * * 4178 * 3220 * 4767 * * * * * * * 588 * * 24 0 * * * * * * 2957 0 0 Q 25 * * 4850 * * * * * * * * * * 104 4840 * * * * * 25 95 3969 * 4392 70 * * 2957 1157 0 A 26 1652 * * * * * * * * * * * * 2407 * 1114 4990 * * * 26 339 2254 * 4392 70 * * 2957 1937 0 R 27 * * * * * * * * * * * * * 716 1472 5024 * * * * 27 0 * * * * * * 3175 0 0 N 28 * * 4104 5152 * 5310 1236 * * * * 4577 * 3098 * 3068 3549 3312 * * 28 331 2482 5271 4407 70 * * 3175 2067 0 L 29 * * * * * * * * * 116 3696 * * * * * * * * * 29 194 2994 * 3142 173 * 0 3190 1427 1000 L 30 * * * * * * * 3244 * 161 * * * * * * * * * * 30 0 * * * * * 0 3190 0 1000 S 31 3158 * * * * 4904 5185 * 2764 * * 4485 * 1735 2569 2587 * * * * 31 494 1786 * 4392 70 * 0 3190 2149 1000 L 32 * * * * * * 3244 * * 235 * * * * * 4485 * * * * 32 0 * * * * * 0 3190 0 1000 T 33 * * * * * * * * * 4485 * * * * * 1960 755 3244 * * 33 0 * * * * * 0 3190 0 1000 V 34 2893 * * * * * * 2026 * * * * * * * 4474 * 799 * * 34 0 * * * * 0 * 3183 0 1000 W 35 * * * * * 3706 * * 3312 * * * * * * * * * 302 6411 35 0 * * * * * * 3175 0 0 G 36 * * * * * 0 * * * * * * * * * * * * * * 36 0 * * * * * * 3352 0 0 I 37 5755 * * * * * 3979 674 * * * * * * * * 4198 2077 * * 37 0 * * * * * * 3352 0 0 K 38 * * * * * * * * 311 * * * * * 2366 * * * * * 38 0 * * * * * * 3352 0 0 Q 39 * * * * * * * 2948 * * * 1631 * 1057 * * 3899 * * * 39 0 * * * * * * 3352 0 0 L 40 3904 * * * * * * * * 100 * * * * * * * * * * 40 0 * * * * * * 3354 0 0 Q 41 * * * 2952 * * 3880 * * * * 3109 3904 844 3986 * * * * * 41 0 * * * * * * 3354 0 0 A 42 437 * * * * 3904 * * * * * * * * * * 2664 4765 * * 42 0 * * * * * * 3354 0 0 R 43 * * * * * * * * 3570 * * * * * 127 * * * * * 43 0 * * * * * * 3354 0 0 V 44 * * * * * * * 6211 * 1942 4857 * * * * 3925 * 676 * * 44 0 * * * * * * 3400 0 0 L 45 2635 * * * * * * * * 961 * * * 5378 * 3891 2097 * * * 45 0 * * * * * * 3424 0 0 A 46 577 * * * * 2862 * * * * * * * * 2990 5534 4481 * * * 46 0 * * * * * * 3420 0 0 V 47 * 4000 * * * * * 2116 * 1392 3886 * * * * 5509 * 2307 * 4875 47 0 * * * * * * 3623 0 0 E 48 * * * 306 * 3361 * * 4727 * * * * * 4875 * * * 5509 * 48 0 * * * * * * 3623 0 0 R 49 4108 * * 5816 * 3658 * * 1307 * * 5512 * * 1857 6648 3936 3886 * * 49 32 5509 * 0 * * * 3623 1000 0 Y 50 * * * * 4756 * * 2928 * 3346 3886 * * * * * 3982 * * 731 50 0 * * * * * * 3623 0 0 L 51 * * * * * * * 3665 * 756 3800 * 3188 * * 5431 * 3649 * 4482 51 0 * * * * * * 3866 0 0 R 52 5477 * 2912 3103 * 4482 * * 1087 * * * * 3653 2908 * * * * * 52 0 * * * * * * 3866 0 0 D 53 * * 771 4941 * 3188 6321 4482 * * * 3614 * * 2912 * * * * * 53 0 * * * * * * 3866 0 0 Q 54 * * * * * * * * * * 2912 4482 * 489 * 3188 * * * * 54 0 * * * * * * 3866 0 0 Q 55 2186 * * 6422 * * * * * 5490 2912 * 4578 1499 * 3542 3188 5490 * * 55 0 * * * * * * 3866 0 0 L 56 3188 * * * 6703 * * 4146 3454 919 * * * 4773 4014 4482 * 4033 * * 56 0 * * * * * * 3866 0 0 L 57 * * * * * * * * * 543 5257 * 3188 * * 4482 * * * 2912 57 0 * * * * * * 3866 0 0 G 58 4288 * * * * 2014 4033 * 4043 * * 2477 * 3800 2531 3182 * 4482 * * 58 0 * * * * * * 3866 0 0 I 59 6101 * 3333 2511 4482 * * 2122 * 3024 6737 3323 * 3600 * 3334 5477 * * * 59 0 * * * * * * 3866 0 0 W 60 * * * * 5477 4482 * 4941 * 2095 * * * * * 4578 * 3800 881 6737 60 0 * * * * * * 3866 0 0 G 61 * * 2940 * * 201 * * * * * * * * * * * * * * 61 0 * * * * * * 3946 0 0 C 62 * 282 * * 5754 * * * * 2654 * * * * * * * * * * 62 0 * * * * * * 3946 0 0 S 63 1982 * * 4136 * * * * 4597 2654 * * * 5842 * 1548 * * 2940 * 63 203 * 2927 * * * * 3946 0 0 G 64 * 4273 5923 * 3039 1479 * * * 4400 * 3653 * * * * * * 1624 * 64 0 * * * * * 0 3445 0 1234 K 65 5273 * * * * * * * 511 * 4072 4862 * * 3050 6548 4400 * * * 65 120 3647 * 0 * 0 * 3445 1560 1234 L 66 5924 * * * * * 2255 6383 * 2336 * * * 1646 * 4048 2562 6077 * * 66 0 * * * * * * 4008 0 0 I 67 * * * * * * 2810 1447 * 4975 * * * * * 3472 * 2001 * 3073 67 0 * * * * * * 3979 0 0 C 68 3777 658 * * * * 3405 * * 2810 * * * 4153 * * * * * * 68 0 * * * * * * 3979 0 0 C 69 * 6672 * * * * 816 * * * * * 3783 4027 5216 * 2443 * * 3689 69 0 * * * * * * 4057 0 0 T 70 * 4851 * * * * 2887 * * 3967 * * * * * 4484 716 * * 3150 70 0 * * * * * * 4119 0 0 S 71 4021 1824 6957 * * * * 5166 * 4520 5619 2789 * * 5946 2617 2283 * 5229 * 71 0 * * * * * * 4119 0 0 V 72 4851 2147 * * * * * * * * * * * * * * * 435 * * 72 28 * 5709 * * * * 4119 0 0 P 73 3885 * * 3751 * * * * 4723 3644 * * 889 * * * 2320 * * * 73 70 5619 5202 0 * * 0 4120 1000 1000 W 74 * * * * * 2734 * * * 4055 * * * * * 3119 * 4663 655 * 74 44 * 5043 * * * 0 4119 0 1414 N 75 * * * 3872 * 4119 * 5901 5827 * * 1200 * 5144 * 4576 1580 * * * 75 28 * 5727 * * * 0 4147 0 1542 T 76 5181 * 4252 4524 5820 * * 5129 4653 2457 * 3257 * 5214 2997 2590 4241 3857 * 3974 76 94 * 3982 * * 1429 670 4142 0 1697 S 77 2909 * * 5302 * * * * * * * * * 4264 * 1370 2565 2617 * 3827 77 137 * 3464 * * 2079 390 4099 0 1932 W 78 * 5107 4217 4221 * 3203 * * * 6288 * * * 5422 5825 4678 * * 595 * 78 144 4457 4343 0 * 1036 965 3863 1456 2431 S 79 4527 * * 4097 * 2140 * 3028 * * * 5913 4643 * * 1479 5146 3247 * * 79 108 5679 4242 0 * 2457 290 4081 1000 2032 N 80 4392 * * 4199 * 4379 * * * 4274 * 759 4915 * * 5695 * 2693 * * 80 208 3607 4265 2742 234 * 0 4074 1534 2210 K 81 4773 * 4250 * * * 4437 2870 2243 * * 2226 * 3574 2638 * 4101 * * * 81 242 3169 4533 877 1135 628 1503 4212 1618 2388 S 82 * * 4450 * * * * * 4616 4350 * 1969 5434 * * 1234 2821 * * 5714 82 82 5070 5301 1000 1000 * 0 4409 1000 2129 L 83 5413 * 5114 6230 6231 * * 3300 3720 1860 5087 5468 5015 2539 * * 4806 * 3634 3368 83 0 * * * * 252 2643 4388 0 2177 D 84 * * 2151 3310 * 3969 * * 4078 * * 4456 5399 3384 4690 4063 1799 * * * 84 57 4690 * 0 * 0 * 4467 1000 1000 K 85 4273 4785 3466 2900 * 5415 * * 3606 * 4401 * 1664 6310 3777 4618 6248 * * 3651 85 0 * * * * * * 4501 0 0 I 86 5356 * 2789 5511 3777 5436 * 826 * 5415 * 3723 5383 5284 * * * * * * 86 34 5415 * 2585 263 * * 4501 1000 0 W 87 * * * * 3361 * * * 3778 * * * * 4434 * * * * 352 * 87 95 4282 6367 0 * * * 4485 1000 0 N 88 5663 * 2004 3335 * 2744 * * 5450 * * 1943 * 3453 * * 3366 * * 6448 88 0 * * * * 0 * 4492 0 1000 N 89 * * * * * * 4434 * 4599 * * 372 * * 3357 5450 5703 * * * 89 0 * * * * * * 4485 0 0 M 90 * 3918 4431 3838 * * * 4455 * 2810 829 * * 5526 * * 4478 * * * 90 0 * * * * * * 4514 0 0 T 91 * 4478 4700 * * 4296 * * * * * * * * * * 208 * * * 91 0 * * * * * * 4514 0 0 W 92 * * * * * * * * * 3584 * * * * * * * * 199 4455 92 128 3556 * 0 * * * 4514 1431 0 M 93 * 4357 4222 * * * 5330 4684 4336 3404 2418 * * 1273 * 4283 * * * 4733 93 0 * * * * * * 4488 0 0 E 94 3253 * * 1554 * * 5515 * 5305 * * 4733 5446 1422 * 4357 5330 * * * 94 0 * * * * * * 4488 0 0 W 95 * * * * * 2837 * 4283 * * * * * * * * * * 306 * 95 0 * * * * * * 4488 0 0 E 96 * * 1986 1176 * 4223 4249 3536 * * * 4517 * 5305 * 5519 * * * 5517 96 0 * * * * * * 4487 0 0 R 97 * * * 3189 * * * 4131 1612 5085 5701 * * 4877 1516 * 3759 * * * 97 0 * * * * * * 4593 0 0 E 98 * * 4429 1612 * * 5647 * 2312 2863 * 5309 * 3242 3147 5404 * * * * 98 0 * * * * * * 4593 0 0 I 99 * * * * * * * 1045 4131 3411 * * * * * * 3596 1829 * * 99 0 * * * * * * 4593 0 0 D 100 3307 * 2087 4569 * 4790 * 4218 5126 4131 * 3776 * 5477 3883 1823 * * * * 100 0 * * * * * * 4593 0 0 N 101 2913 * * 5277 6262 * * * * * 5126 837 * 5115 5309 4842 3587 * * 3885 101 0 * * * * * * 4593 0 0 Y 102 5528 * 5463 * 4566 * 4104 3745 * 1914 * * * 4218 * 4807 * 5647 6151 1352 102 0 * * * * * * 4593 0 0 T 103 * * 4981 2637 4753 * 5093 * * * 5218 * 6242 4031 * 3959 797 * * * 103 87 * 4089 * * * * 4336 0 0 S 104 3793 * 2612 * * 1568 * * * * * 3979 * 2275 * 3455 3930 * * * 104 0 * * * * 0 * 4116 0 1000 L 105 * * 5093 3943 * * 3707 3401 6150 3991 * 1687 * 5536 * * 2021 3664 * * 105 0 * * * * * * 4336 0 0 I 106 * * * * * * * 339 * 5101 * * * 4002 * * * 4753 5512 4089 106 0 * * * * * * 4336 0 0 Y 107 * * 4316 4470 5036 * 6527 * * * * * * 5051 * 2265 2433 * * 1184 107 93 4002 * 0 * * * 4336 1000 0 T 108 4188 * 2707 3608 * 2669 * 4666 2801 5101 * 3536 * 4445 5908 3298 5162 4003 * * 108 0 * * * * * * 4336 0 0 L 109 3558 4089 5430 4744 * * * 5536 * 867 4180 * * 6135 4948 4741 5351 * 4002 * 109 0 * * * * * * 4336 0 0 L 110 * * * * * * * 2238 * 344 * * * * * * * * * * 110 0 * * * * * * 4336 0 0 E 111 5351 * * 1117 * 6543 * * 2627 * * 4737 * 2747 4413 * 4948 3718 * * 111 0 * * * * * * 4336 0 0 E 112 4374 * 3062 1417 * 4000 * 4206 3533 5597 * 3889 * 3076 5505 * * 5286 * * 112 0 * * * * * * 4336 0 0 S 113 910 * * * * * * 4000 * * * * * * 3501 1658 * * * * 113 0 * * * * * * 4336 0 0 Q 114 2904 * * * * * 3203 * 3485 * * * * 1012 4239 * * * * 3061 114 0 * * * * * * 4335 0 0 N 115 3521 * 3213 2956 * * * 3085 * 5239 * 2229 6032 5016 4155 6128 2831 4024 * * 115 0 * * * * * * 4254 0 0 Q 116 * * * 4967 * * 4844 4766 * 5334 * * 4108 746 5155 3061 3845 * * * 116 0 * * * * * * 4284 0 0 Q 117 3969 * * 2462 * * 5193 * * * * * * 831 2988 * 4676 * * * 117 0 * * * * * * 4398 0 0 E 118 * * 4613 951 * 3969 * * 3902 4515 * 3708 * 2388 * * * * * * 118 0 * * * * * * 4398 0 0 K 119 * * * 3455 * * * * 1467 4676 * 2655 * 4474 2000 4761 5845 * * * 119 0 * * * * * * 4398 0 0 N 120 4277 * * * * * * * 3998 4022 4225 448 * * * * 4718 * * * 120 0 * * * * * * 4265 0 0 E 121 * * * 1421 * * * * 3378 3762 3872 4225 * 2742 * * 4702 2767 * * 121 0 * * * * * * 4265 0 0 Q 122 * * 4110 * 4152 * 2652 * 1885 * * 4535 * 2451 2940 * * * * 3326 122 0 * * * * * * 4265 0 0 E 123 3570 * 1561 1625 * * * * 2647 * * * * 4699 * * 4192 * * * 123 0 * * * * * * 4201 0 0 L 124 * * * * 4499 * * * * 414 * * * * * * * 3443 * 3141 124 0 * * * * * * 4201 0 0 L 125 5236 * * 5155 * * * * 4499 1210 * * * 1440 * * 5416 * 4192 5493 125 0 * * * * * * 4201 0 0 E 126 2066 * * 2306 * * 4163 * 1840 * * * * 4103 3488 3707 * * * * 126 0 * * * * * * 4152 0 0 L 127 * * * * * * * 4157 * 83 * * * * * * * * * * 127 0 * * * * * * 4090 0 0 D 128 * * 330 * * * * * * * * 2292 * * * * * * * * 128 0 * * 0 * * * 3107 0 0 //