HHsearch 1.5 NAME c9n6iC_ FAM FILE c9n6iC_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9n6iC_.a3m DATE Sat Jun 14 12:00:28 2025 LENG 88 match states, 88 columns in multiple alignment FILT 103 out of 290 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.5 EVD 0.4008 -0.6387 SEQ >ss_pred CCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCC >ss_conf 9301310700124756699999999941655439999999999999999999999999985499753899999999981888888899 >Consensus xxxxxkxxrxxxxxIxKxxIxrlaxxxGxxrISxdaxxxixxxxxxfixxixxxAxxxaxhxkRkTIxxxDVxxALkrxgxxxYGfxg >c9n6iC_ AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG >UniRef50_UPI0000583F90(10-97:380) PREDICTED: similar to TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000583F90 E=7e-14 s/c=0.89 id=25% cov=94% -----KATDDKKYAIfSKDSIKTMAESAGHERLSEETAAILAEDVCYRLREAVQASAQFMKHSKRKRMTSDDVNKALRWSDvEPIHGYG- >UniRef50_B3L5R9(1009-1107:1192) Ccaat-box dna binding protein subunit b,putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L5R9_PLAKH E=1e-09 s/c=0.65 id=18% cov=94% ----KKIKPDSETLLPIANISRIMKRIlpASAKVAKESKDIIRECVTEFIQFLTSEvsekggqthASDRCVRERRKTISGEDILFSMEKLGfndyvEPLY KY-- >UniRef50_C4VAY9(5-83:150) Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VAY9_NOSCE E=0.0003 s/c=0.59 id=26% cov=89% -------NRDEENSLPKSTVDRFVNNCLPKQItvSKDAKEMFSNCIIEFLKMISLKATTICEKEKKKTIAFEHLIKALEEKGFAEY---- >UniRef50_UPI0001C41BD1(4-64:66) archaeal histone n=2 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41BD1 E=0.0005 s/c=0.75 id=24% cov=62% ---------------------RILKEAGAERITDDAKKAFADAVEASAEELAKKVIKAAAHAGRKTVTVDDIKFV------------- >UniRef50_C4R5Y2(271-340:387) Putative uncharacterized protein n=1 Tax=Pichia pastoris GS115 RepID=C4R5Y2_PICPG E=9e-05 s/c=0.69 id=24% cov=77% ----------------KSMILKMVKfKTGRTTIGPNLYPTLQSISDDFFTQVSEDLCRYAEHGRRSMVNFTDIQLLTQRINKNL----- >UniRef50_UPI0001926F4A(34-107:329) PREDICTED: similar to nuclear transcription factor Y, gamma n=1 Tax=Hydra magnipapillata RepID=UPI0001926F4A E=5e-06 s/c=0.70 id=25% cov=78% -----------IQELPLARIKKIMKQdGEVKMISAEAPILFSKAAEIFISELTLRAWIHTEDNKRRTLQRNDIAMAITKY--------- >UniRef50_Q6CHS6(25-101:163) DNA polymerase epsilon subunit D n=1 Tax=Yarrowia lipolytica RepID=DPB4_YARLI E=7e-06 s/c=0.67 id=26% cov=53% -------------------------------ISKDALTAIQRAATLFVSYMASHGNASAEAGGRKKITPQDVFVALK----------- >UniRef50_P49905(86-166:196) Transcription initiation factor TFIID subunit 12 n=16 Tax=Diptera RepID=TAF12_DROME E=0.0002 s/c=0.58 id=22% cov=90% ---------ENTPMLTKPRLTELVREVDtTTQLDEDVEELLLQIIDDFVEDTVKSTSAFAKHRKSNKIEVRDVQLHFERkYNMWIPGFG- >UniRef50_D0N7M9(21-95:474) Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0N7M9_PHYIN E=0.0006 s/c=0.60 id=25% cov=77% -------------------VRRFLLRAGFRSSSDRAAAEVRRHVSDFFRRIVGCMVVMMQHDGRRNFRLIDVKRACEHFGIRMYGY-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 2387 0 0 K 2 * * * 3494 * * * * 630 * * * * 1915 * * * * * * 2 0 * * * * * * 4077 0 0 R 3 * * * 3114 * * * * 2804 * * * 3498 * 615 * * * * * 3 0 * * * * * * 4129 0 0 H 4 * * * 3471 * * 2429 3114 1957 2729 3916 * * * 3895 * * * * 3904 4 0 * * * * * * 4129 0 0 R 5 3239 * * * * * * * 1680 * 4156 * 3566 3966 1406 * * * * * 5 0 * * * * * * 4403 0 0 K 6 * * * * * * * * 231 * * 3741 * * 3773 * * * * * 6 100 * 3899 * * * * 4615 0 0 V 7 3599 * * * * * * 2335 3735 1931 4066 2852 * 4015 * * * 4459 * 3711 7 117 3680 * 0 * * 0 4481 1000 1000 L 8 * 4135 * * * * * * 2988 2789 * 2675 * 2840 * 2108 2794 * * * 8 0 * * * * 0 * 4759 0 1000 R 9 * * 3836 * * * * * 2366 * * * 3940 * 819 3264 * * * * 9 0 * * * * * * 5046 0 0 D 10 * * 1102 3299 * * 3628 * 4369 4716 * 4548 * 4497 * 3176 3889 * * * 10 79 * 4235 * * * * 5465 0 0 N 11 3451 * * 4072 * 3590 * 4068 3284 * * 1841 * * * 2163 3301 * * * 11 60 * 4623 * * * 0 5375 0 1000 I 12 4639 * 4775 2081 * * * 1370 4322 4668 * 4061 * * * * 3384 4181 * * 12 0 * * * * 939 1063 5483 0 1576 Q 13 * * 3936 4837 * * * * 3154 4664 3724 3596 2169 3156 3257 * 4719 * * 3154 13 93 4007 * 2585 263 * 0 5723 1322 1000 G 14 3695 * * 4527 4710 1511 * * 3761 4719 4554 * * * 3640 3233 * 2742 * * 14 0 * * * * 0 * 5723 0 1000 I 15 * * * * * * * 672 * 2055 4404 * * * * * * 3565 * * 15 41 5165 * 0 * * * 6006 1000 0 T 16 5175 * * * * * * 5375 * 4593 5270 5151 1907 * * 1590 2369 4051 * * 16 122 5217 4205 2807 222 * * 6064 1000 0 K 17 5234 * * 5175 * * * 5278 547 4097 * 4263 * 4206 4560 5139 * * * * 17 0 * * * * * 0 6186 0 1599 P 18 2241 * 3535 3364 * 3890 * * 3123 4115 * 5142 2754 5334 4621 3388 5175 * * * 18 61 4585 * 0 * 889 1120 6186 1000 1599 A 19 3495 4308 4513 * 4208 * * 4594 3934 5685 5140 3902 3333 * 4227 2177 2809 * * 5322 19 0 * * * * * 0 6342 0 1000 I 20 4822 * * * 4383 * * 875 * 3093 4932 * * * * * * 2174 * * 20 0 * * * * * 0 6446 0 1000 R 21 4487 * 4601 5735 * 5112 * 5755 1851 4682 * * * 3500 1590 4573 3852 * * * 21 0 * * * * * 0 6446 0 1000 R 22 * * 5185 4193 * * * 5975 2726 5486 5832 * * 5633 925 3867 5984 3645 * * 22 0 * * * * * 0 6502 0 1000 L 23 * 5526 * * 3111 * * 1788 * 1348 4081 * * * * * * 3577 * 4744 23 0 * * * * * 0 6592 0 1000 A 24 974 * * * 5900 6064 * 4072 * 3323 2994 5951 * * * 5526 * 2873 * * 24 0 * * * * 0 * 6592 0 1000 R 25 * * * 2362 * * 5293 * 2018 4374 * 4732 * 4402 1514 5972 4882 * * * 25 31 5536 * 0 * * * 6604 1000 0 R 26 5613 * 4898 3452 * * 5622 4870 3288 * * 3872 * 3788 1933 2039 5091 5476 * * 26 98 3927 * 1347 721 * * 6604 2250 0 G 27 2180 4814 * 5952 5381 2135 4911 3076 6249 3920 6037 5627 * 5940 * 4301 5547 3240 * 6055 27 106 4158 6049 1000 1000 * * 6633 1840 0 G 28 6069 * 4590 4707 * 490 * * * 4041 * * * 5328 * 3816 5687 5859 * * 28 31 5569 * 0 * * 0 6704 1000 1000 V 29 3011 4989 5341 * 4352 5201 5160 2442 4420 5668 5473 6303 4776 6146 4718 3842 5619 1992 * * 29 0 * * * * * 0 6786 0 1000 K 30 2929 * 3550 3057 * 6530 5894 5264 1972 * 5981 5922 * 5775 3656 3694 3464 4793 * 5587 30 122 3922 6032 2026 406 0 * 6917 2439 1000 R 31 * * 5263 4694 5719 5813 * 6509 2276 * 4677 4400 6504 4613 1108 4031 5833 * * * 31 35 5396 * 2585 263 0 * 6938 1083 1000 I 32 * * * * * * * 1011 * 2476 3756 * * * * 5211 * 2164 * * 32 13 6776 * 1000 1000 * * 6973 1000 0 S 33 3716 * 3668 6096 * 4375 * * 5193 * * 4786 5562 4476 6230 774 4194 * * * 33 0 * * * * * * 6973 0 0 G 34 2836 5173 2303 4365 * 3126 6503 * 1956 * * 3615 4876 * 4966 4319 * * * * 34 0 * * * * * * 6973 0 0 L 35 4082 * 1257 1693 * 5149 * * * 6384 * 4663 * * 4720 5233 4263 5873 * * 35 0 * * * * * * 6973 0 0 I 36 1288 3703 * * 6504 6525 * 3035 * 4995 6123 * * * * 3770 4514 2272 * * 36 0 * * * * * * 6973 0 0 Y 37 3212 6382 * 4416 6168 * * 4848 2660 3316 5860 * 4341 5375 3481 5469 * 3237 * 2203 37 0 * * * * * * 6973 0 0 E 38 3495 6056 2616 1695 * 5129 * 4543 3713 5709 6223 4923 4545 3796 5390 4371 6293 6468 * * 38 0 * * * * * * 6973 0 0 E 39 2720 4877 5102 2298 6472 * 5923 4716 5194 2245 5013 * * 5876 * 5068 2967 4112 * 6148 39 0 * * * * * * 6981 0 0 T 40 4788 * * * 3614 * * 1920 * 1503 4125 * * * * 5862 5097 2632 * * 40 0 * * * * * * 7017 0 0 R 41 2803 5586 5796 5110 * 6311 5795 6687 5890 3738 5744 4333 * 2640 2366 2795 4489 4461 * * 41 0 * * * * * * 7008 0 0 G 42 5025 * 3138 1864 * 6596 * 5824 2709 5189 6651 3443 6178 3607 3249 5214 5079 6235 * * 42 0 * * * * * * 7184 0 0 V 43 2335 2558 3867 4411 5626 * 4735 3280 5918 4526 5004 * * 5328 * 3583 6498 3518 * 4109 43 0 * * * * * * 7184 0 0 L 44 2260 3142 * * 5004 4905 * 3425 * 2586 5735 * * * * 3789 4093 2386 * 6294 44 0 * * * * * * 7184 0 0 K 45 * 6584 3138 2023 * 6444 * 4048 3301 * * 3844 * 6171 5134 2952 3168 3266 * * 45 0 * * * * * * 7130 0 0 V 46 4697 * 3332 1711 5397 * * 3948 4529 3675 6498 5635 * 4703 * 5211 6263 3220 5187 3291 46 0 * * * * * * 7219 0 0 F 47 6419 * 6278 6502 802 * * 5462 5842 4111 6866 * * * 2487 5786 * * 6154 3762 47 0 * * * * * * 7150 0 0 L 48 4044 * * * 3655 5787 * 1662 * 1850 5060 * * * * 5992 * 2302 * * 48 0 * * * * * * 7150 0 0 E 49 4363 6282 5123 2903 * 4220 3834 7112 2968 3656 4932 4498 * 7132 2890 3135 3697 5154 * * 49 0 * * * * * * 7150 0 0 N 50 5633 6003 3899 2116 3705 * 4473 4404 5304 4537 4287 4650 * 3211 4585 5105 4409 5992 * 3371 50 0 * * * * * * 7150 0 0 V 51 4762 * * * * * * 1667 * 1838 4770 * * * * * 4779 1759 * * 51 25 5839 * 0 * * * 7150 1000 0 I 52 2494 5896 * * 5515 5493 * 3211 5852 2965 4070 * * * * 2945 2125 3481 * * 52 0 * * * * * * 7150 0 0 R 53 3607 5349 4130 3383 6305 3999 5496 6851 4558 4212 * 4283 * 2960 2950 2680 5115 5001 * 6324 53 0 * * * * * * 7150 0 0 D 54 4338 4155 2024 2388 5210 6741 6467 6706 3935 5971 5301 6715 * 3319 3113 6013 4516 6792 * * 54 10 7141 * 3170 170 * * 7150 1000 0 A 55 742 5367 * 5841 * 5250 * 5526 * 3594 5338 * * * * 2915 6013 4142 * * 55 0 * * * * * * 7150 0 0 V 56 3598 3836 * 6305 6880 6706 6034 3455 4357 4461 4722 2749 * 4957 4915 2530 3993 3811 4555 6126 56 0 * * * * * * 7150 0 0 T 57 3898 * 2965 2992 * 4913 * 3210 2500 4134 4179 6914 * 4212 3971 6585 3947 4616 * 7187 57 0 * * * * * * 7150 0 0 Y 58 4637 4968 * 6004 2249 * 4561 2790 4818 3104 4476 6189 * 7083 5417 6467 5841 3380 * 2746 58 0 * * * * * * 7150 0 0 T 59 1413 2370 * * * * * 5214 * 5170 2748 * 6369 6167 * 4114 3137 5053 * * 59 14 6694 * 2322 322 * * 7150 1000 0 E 60 5929 * 4751 2364 * * 5430 4815 2331 5423 5602 4331 5205 3199 3117 4864 4130 4094 * * 60 0 * * * * * * 7150 0 0 H 61 4673 5862 5708 4133 * 4777 1273 7144 3479 6302 6978 4925 * 4940 4385 3120 7556 * * 3920 61 0 * * * * * * 7150 0 0 A 62 2331 6167 4100 2850 6504 3210 5651 * 4598 * * 3971 * 5993 3295 2302 5266 * * * 62 34 5441 * 1867 462 * * 7150 1714 0 K 63 6020 * 4716 5139 * 2581 4363 * 1350 * 6877 3314 * 4389 3557 4397 5565 * * * 63 17 6455 * 2322 322 * * 7150 1000 0 R 64 5366 * * * * * 6034 * 2723 * * * * * 413 4102 * * * * 64 0 * * * * * * 7150 0 0 K 65 5297 * 4471 6167 * 6855 6369 * 955 6126 * 5221 6167 3986 2909 4200 4172 5802 * * 65 0 * * * * * * 7150 0 0 T 66 6781 * * * * * * 5657 3747 4675 5520 4550 * 4530 4477 6034 595 5175 * * 66 0 * * * * * * 7150 0 0 V 67 * * * * 5338 * * 1256 * 2129 4491 * * * * * * 1820 * * 67 0 * * * * * * 7150 0 0 T 68 4368 * 3807 4006 6585 6661 6345 * 3325 4422 4438 3770 * 5333 4335 2876 1786 * * 5729 68 0 * * * * * * 7150 0 0 A 69 2214 5763 6918 4842 4348 3976 6664 4866 5265 5338 5989 * 2735 * 4448 4398 2848 3205 * 6808 69 0 * * * * * * 7150 0 0 M 70 5233 6167 2694 2192 * * * 5338 3451 * 6828 4347 6455 2937 3563 3073 4202 6345 * * 70 0 * * * * * * 7150 0 0 D 71 * * 240 * * * 3011 * * * * * * * * * 5089 * * * 71 14 6694 * 1585 585 * * 7150 1000 0 V 72 * * * * * * * 1397 * 4001 5214 * * * * * * 954 * 6097 72 0 * * * * * * 7150 0 0 V 73 4284 5564 4586 4512 4182 6629 * 2926 3720 2080 6452 3363 * 3490 6741 5163 6636 3664 * 6794 73 0 * * * * * * 7080 0 0 Y 74 4247 * 6332 3853 4111 4577 5417 * 3355 2341 5407 4167 * 3903 3677 3785 4697 5357 4977 4159 74 0 * * * * * * 7080 0 0 A 75 573 5030 * * * 5457 4177 5839 * 3859 * * * * * 4036 5451 4963 * 5909 75 0 * * * * * * 7080 0 0 L 76 5527 5258 * * 4596 * * 3125 * 783 3253 * * * * 5155 6346 3844 * * 76 45 6819 5519 0 * * * 6893 1000 0 K 77 3559 * 4847 2150 * 4877 6458 * 1583 * * * * 3703 2942 4134 6359 * * * 77 66 4477 * 0 * * 0 7049 2162 1674 R 78 4385 * 3607 4048 * 4897 5146 * 3793 3663 6426 4278 * 5562 1206 4397 * 5732 6319 * 78 45 5034 * 0 * 963 1037 7046 1760 1674 Q 79 4855 * * * 3989 6032 * 4011 4379 1524 3713 3852 * 3566 4650 4604 5450 5602 * 3736 79 29 5671 * 0 * 0 * 7073 1000 1000 G 80 * * 4117 * * 611 * 5906 * 4212 * 2412 * * * * * 5097 * * 80 264 2583 * 1055 947 * * 6664 3221 0 R 81 * * 4796 1906 2383 * 5617 3690 4329 3367 3995 4126 * 4222 5792 * 4442 * * 5426 81 69 5397 5426 0 * * * 6626 1000 0 T 82 4524 5515 3726 3157 * 5856 * 5899 4553 5660 5402 4292 1737 4938 3210 4183 4313 * 5064 * 82 0 * * * * * 0 6531 0 1000 L 83 5023 * 4037 4862 * 5661 4792 2438 * 2062 4113 6178 * 4668 4926 3894 * 3312 * 3604 83 43 5090 * 2000 415 0 * 6531 1000 1000 Y 84 * * * * 3438 * 5373 4219 * * * * 4113 * * * * * * 373 84 0 * * * * * * 6463 0 0 G 85 * * 3212 * * 226 * * 4760 * * * * * * * * * * * 85 0 * * * * * * 5651 0 0 F 86 * * * * 833 * * 5351 * * * * * * * * * * * 1271 86 0 * * * * * * 5454 0 0 G 87 * * * 2009 * 1230 * * 3367 * * 3197 * * * 3066 * * * * 87 0 * * * * * * 3510 0 0 G 88 * * * * * 0 * * * * * * * * * * * * * * 88 0 * * 0 * * * 3005 0 0 //