HHsearch 1.5 NAME c9n5fL_ FAM FILE c9n5fL_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9n5fL_.a3m DATE Sat Aug 16 13:56:14 2025 LENG 114 match states, 114 columns in multiple alignment FILT 103 out of 140 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.5 EVD 0.4187 -0.1171 SEQ >ss_pred CCCCCHHHEEECCCCCCEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH HHHHHHHHHHHCCC >ss_conf 9677600244447987168999706888559999965785068999999960998049887603878770399999779999899999999999999999 99999999861279 >Consensus mNxpxxxexxxlxxgexkvxxxxxxkxxnxxxfxixxEDHTLgNxLrxxLxxdpxVxfAgYxipHPlxxxxxlrIqTxxxxxpxxalxxaxxxLxxxxxx lxxxFxxexxxkxx >c9n5fL_ MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGA LKTNFETEWNLQTL >UniRef50_A8B8N8(3-117:131) RNA polymerase II subunit Rpb11 n=3 Tax=Giardia intestinalis RepID=A8B8N8_GIALA E=1e-24 s/c=0.99 id=26% cov=93% -NVPDRYKTLIPDRRSAELLEVYKVGTANALEFQIPYQDYTIGHILRKELLSMPQVTFAGMKTPHPLESKIVIRLQTNPsgflsdtiQATPENCFQSALT KITESMELIKKTFM-------- >UniRef50_Q65184(257-356:359) Putative DNA-directed RNA polymerase subunit 3 homolog n=7 Tax=African swine fever virus RepID=RPB3_ASFB7 E=0.0001 s/c=0.47 id=25% cov=84% ------YENFEEPQPEL-VLFSLDEEKTKA-IITIKDETHTIGNLLKTCIYEMiPDISFVGYQcVPHKQEMVLTI-IHKASQEDLITLLEKSIQNIIQTF QILEKN---------- >UniRef50_Q4Q860(20-122:137) DNA-directed RNA polymerase-like protein n=8 Tax=Trypanosomatidae RepID=Q4Q860_LEIMA E=4e-19 s/c=0.93 id=27% cov=89% MNEGDEVDTSE----EQKVQIdlQRITDNESTAVVAFSHEDHTLGNPLRHVLMQNAAVTSAGYAIPHPLEPKMLLHVQASDY--AVEAVAKGLERLAEIC DDTISSFD-------- >UniRef50_D1JHV8(16-112:113) Putative uncharacterized protein n=2 Tax=uncultured archaeon RepID=D1JHV8_9ARCH E=2e-10 s/c=0.69 id=20% cov=82% -----------LSMNEGDIKMKVVERNENELRLEIEGEGNTLLAPLTSKLLENENVDLATNSMTHSLLGNSILYVKMKKG-DALEAVESAATSLASDFEE FGRKY--------- >UniRef50_Q9HIC5(4-100:111) DNA-directed RNA polymerase subunit L n=4 Tax=Thermoplasmatales RepID=RPOL_THEAC E=5e-14 s/c=0.81 id=24% cov=85% -------------ERTAESSLRVISKEKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIYVRVKSGK-PQSAIKRAVRKLSKLYED LGTQFQKEFQ---- >UniRef50_C4V9M5(3-88:91) Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V9M5_NOSCE E=1e-11 s/c=0.82 id=26% cov=76% ------------------VEINYDKNIKNTIELKVEKETHSLGSSLSDKLCKDKRCIFSSYKVCHPKDDFMFLRVSCDDAISVKDCIVENLVDLENITQD LINQ---------- >UniRef50_Q2NE51(1-88:88) RpoL n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NE51_METST E=2e-10 s/c=0.76 id=24% cov=62% -------------------------------------ESHTICNILRKRLMDYDEVDAAAYDITHPLIGQPEFEIR---SSNPRKSMTNAAKEVKEEALS FKDALIKGFE---- >UniRef50_D2EFV6(2-88:92) Putative uncharacterized protein n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EFV6_9EURY E=2e-07 s/c=0.65 id=22% cov=75% ------------------MEIKVLEKEDSSIKFRVQGGTQSVLNLIKEEADSFDNVTFAGFVMEHPLEKSSIFVIKTDGK-DAEKTLKKIIEKTESDLKE AKKE---------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 4195 * 3838 192 * * * * * * * * * 1 0 * * * * * * 3694 0 0 N 2 * * * * * 4926 * * * * * 48 * * * * * * * * 2 0 * * * * * * 4060 0 0 A 3 1537 * * 4219 * * * * 2772 * * * 4958 2373 4529 * 4739 3213 * 4595 3 0 * * * * * * 4114 0 0 P 4 4992 * * * * 4241 * * * 4550 * * 265 * * * 4621 * * * 4 0 * * * * * * 4128 0 0 D 5 4650 * 1285 2526 * * * * * * * 2178 5200 * * 2967 * * * * 5 0 * * * * * * 4171 0 0 R 6 2551 * * 4273 * * * 4683 4342 4702 * * 4824 * 882 * 3771 * * * 6 0 * * * * * * 4207 0 0 F 7 2401 * 4898 * 2265 * 5205 5098 4408 4954 * 4773 * * * 5443 4762 3500 * 2008 7 0 * * * * * * 4301 0 0 E 8 * * 1780 868 * * * * 3367 * * * * * * 4926 * 5006 * * 8 53 4791 * 1585 585 * * 4399 1000 0 L 9 * * * * * * * 3872 5202 1697 3761 4100 * 5006 4421 1974 3374 4827 * * 9 0 * * * * * * 4399 0 0 F 10 * * * 4581 1042 * * 3973 * 2416 * * * * * 4541 4850 5188 5182 3494 10 0 * * * * * * 4455 0 0 L 11 * * 5444 2242 * * * 2783 * 2242 * 5103 * 5156 * * * 1507 * * 11 56 * 4721 * * * * 4656 0 0 L 12 * * 4886 4416 * * * * * 463 3980 * 3874 * * * * 4002 * * 12 69 * 4429 * * * 0 4813 0 1000 G 13 2568 * 2596 4367 5530 5327 * * 5155 4503 * * 1609 4337 * 3521 * 4867 * * 13 0 * * * * 602 1551 4816 0 1970 E 14 * * 2729 1646 * * * * * 4610 3866 6014 2383 3428 4816 4044 5383 * * * 14 145 3883 5150 1780 497 * 0 5062 1969 1000 G 15 4945 * 4409 * * 814 * * * * * 3307 4565 * 3233 * 3291 * * * 15 0 * * * * 986 1014 5024 0 1526 E 16 4905 * 5301 778 5536 * * * * 4068 * * * 4979 * 3936 3107 3969 * * 16 0 * * * * * 0 5188 0 1000 S 17 3935 * 4884 4212 * 4664 5341 5928 1799 4863 * 4932 5886 3152 2284 4532 * 4882 * * 17 110 5664 4213 0 * * 0 5331 1000 1000 K 18 * * 4504 2957 * 5375 * * 529 5340 * * 4747 * 4374 * * * * * 18 32 * 5517 * * 539 1681 5244 0 2143 L 19 * * * * * * * 2064 * 2608 2658 * * * * 5115 5376 1375 * * 19 0 * * * * * 0 5546 0 1575 K 20 5395 * * 1743 * * * 5511 3496 3152 * * * 4672 3873 3846 2482 3614 * 5892 20 0 * * * * 953 1049 5587 0 1575 I 21 * 4721 * 2992 3554 * * 1709 * 3395 3762 * * * * * 5904 4458 4263 2624 21 69 5526 5310 1000 1000 0 * 5608 1000 1000 D 22 * * 4949 2079 * * * 5098 2083 5330 * 3619 * 3822 5211 5311 2975 3743 * 4849 22 33 5481 * 1585 585 * 0 5637 1000 1000 P 23 3926 * 5619 3038 * * * 3387 3755 4759 * 5330 3508 5747 3766 4947 4701 2202 * 3435 23 0 * * * * * 0 5637 0 1000 D 24 5481 * 1336 3417 4130 * 5856 3132 5431 3657 * 4252 * * 5326 4760 6016 4345 * 5806 24 36 * 5343 * * * 0 5637 0 1000 T 25 * * 4518 2460 6187 4042 * 5285 3742 4893 * 4613 5973 * 4542 2325 2038 5419 * * 25 47 * 4954 * * * 0 5636 0 1599 K 26 * * 3928 3917 * 4214 * * 1101 * * 3860 * 5709 2295 5860 4684 * * * 26 49 6235 5636 4322 74 * 0 5692 1000 2488 A 27 6202 * 3769 2984 4855 * * 3092 3843 4811 3612 3264 4452 6027 * 4308 2946 3289 * * 27 0 * * * * 1256 783 5702 0 2771 P 28 3855 * 2749 3536 5909 4498 * * 2963 4573 * 5696 1972 * 4160 4170 3950 6119 * * 28 0 * * * * 535 1689 5731 0 2089 N 29 * 6110 3370 5357 * * 5228 * 5584 5117 * 781 * * * 2677 4327 * * * 29 18 * 6333 * * * 0 5597 0 1000 A 30 1996 2384 * 3220 * 5611 6365 6388 5397 4925 * 6364 * 5343 * 3418 2665 4810 * 5281 30 47 * 4950 * * 843 1176 5610 0 1626 V 31 2476 4374 * * 6604 2375 * 2582 4961 3124 4559 6083 * 5626 4911 3618 * 4420 * 5939 31 0 * * * * 512 1743 5597 0 2168 V 32 * 6039 4621 2427 * * * 3493 3794 5609 6618 6652 * * 4289 4569 1350 4119 * 6214 32 0 * * * * * 0 5682 0 1000 I 33 * * * * 998 * * 2457 * 3294 6049 * * * * * * 2770 * 4225 33 0 * * * * 0 * 5717 0 1000 T 34 5474 5849 * 2642 * * * 3697 3502 4167 6633 * * 3443 3949 4637 2369 2617 * 6032 34 0 * * * * * * 5782 0 0 F 35 * * * * 1766 * * 1666 * 2323 4519 * * * * * * 2761 * * 35 0 * * * * * * 5791 0 0 E 36 6120 * 6848 1888 5659 6721 3512 4168 3493 4892 5615 3965 5133 4149 3907 6155 5440 4441 5854 3733 36 0 * * * * * * 5791 0 0 K 37 * * 2993 4450 * 1525 6155 * 2289 3917 * 2995 * 6939 4790 6293 * * * 6189 37 0 * * * * * * 5791 0 0 E 38 5851 * * 192 * 4847 * * * * * * * 4120 * * * * * 6053 38 0 * * * * * * 5822 0 0 D 39 * * 582 * * 3100 * * * * * 6790 * * 6454 3981 2924 * * * 39 0 * * * * * * 5822 0 0 H 40 6054 * 6308 * * * 329 5874 * * * 4505 * 5138 5851 * * * * 3844 40 0 * * * * * * 5822 0 0 T 41 * * * * * 6080 * * * * * * * * * 4539 86 * * * 41 0 * * * * * * 5822 0 0 L 42 5697 * * * 4399 * * 2417 * 712 4457 * * * * * * 4111 * 4952 42 0 * * * * * * 5833 0 0 G 43 3672 4470 * * 5526 724 * 5998 * 2955 4097 * 5247 * * * * 5643 * * 43 0 * * * * * * 5833 0 0 N 44 6260 * 4939 6068 * 6543 4873 5863 * 6560 * 446 * 6478 6072 4036 4921 * * 6303 44 0 * * * * * * 5833 0 0 L 45 2241 5792 * * * 6471 * 3028 * 1421 4828 * 3550 * * 3409 5413 5329 * * 45 0 * * * * * * 5885 0 0 I 46 * * * * * * * 2156 * 565 * * * * * * 6299 3523 * * 46 0 * * * * * * 5885 0 0 R 47 3636 * * 5870 * * 5646 * 2807 6838 * 7023 * 4769 1150 4658 4139 2841 * * 47 0 * * * * * * 5885 0 0 A 48 4905 5986 3942 2841 6065 5695 3477 6621 3693 * 3474 3999 * 5613 * 3160 3681 6593 4470 3103 48 0 * * * * * * 5885 0 0 E 49 4068 4315 6312 2216 7007 * 5745 3519 3814 4906 3895 6299 * 3073 4216 * 5234 3045 * 4509 49 0 * * * * * * 5885 0 0 L 50 3778 * * * * * * 2417 * 483 * * * * * * * 5345 * * 50 0 * * * * * * 5885 0 0 L 51 5413 5312 5830 5319 * 6101 3870 3643 4861 1526 2753 4132 * 5475 7014 3911 6554 5322 * 5250 51 0 * * * * * * 5885 0 0 N 52 4317 6554 6765 3081 * 6900 * * 1850 6631 * 3757 * 2893 2383 3841 4443 * * * 52 0 * * * * * * 5885 0 0 D 53 6953 5871 1329 4915 5188 * 4475 5177 4331 6746 4446 2241 * 5150 5916 5497 6438 5990 * 4917 53 42 5112 * 956 1045 * * 5888 1676 0 R 54 6272 * 3561 2706 * * * * 2707 * * 4999 1128 5638 5970 3812 * * * * 54 0 * * * * * * 5852 0 0 K 55 4727 * 2765 3240 6672 3258 4282 * 3228 * 5867 2929 * 3701 3077 4521 5375 * * 5301 55 0 * * * * * * 5852 0 0 V 56 * 5277 * * * * * 3572 * * * * 5986 * * * 5099 243 * * 56 11 * 7064 * * * * 5852 0 0 L 57 4751 * 2883 2015 6944 6760 * 4269 3394 2738 * 6381 * 6653 7016 4272 3129 4072 * 6583 57 31 * 5561 * * 0 * 5892 0 1000 F 58 4844 * * 6064 643 * * 4330 5082 4513 5156 * * 5840 * 6252 * 3785 * 4162 58 0 * * * * 0 * 5835 0 1567 A 59 605 2428 * * * * * * * * * * * * * 3515 * 3852 * * 59 0 * * * * * * 5852 0 0 A 60 2935 * * * 6373 788 * 5867 5734 6288 * 6159 * 5334 5042 4238 3696 6135 * 5986 60 12 6939 * 5728 27 * * 5852 1000 0 Y 61 * 6698 * * 4807 * * * * 6302 6227 6282 * * 5409 * * 4756 * 226 61 0 * * * * * * 5852 0 0 K 62 5177 5164 3633 4984 5552 * 5867 4688 2401 * 6288 5082 * 5486 2590 2704 3308 4312 * 5047 62 29 6109 7593 0 * * * 5852 1000 0 V 63 4547 * * * * * 6049 1663 5065 4697 3285 5599 * 3858 6408 * 5616 1660 * 5866 63 0 * * * * * 0 5851 0 1000 E 64 5422 6051 3293 3320 * 6575 * 6312 3681 6155 * 5557 865 * 6673 6615 5097 5331 * * 64 17 * 6421 * * * 0 5851 0 1000 H 65 * * * * 4604 * 123 * * * * * * * * * * * * 4624 65 44 * 5072 * * 612 1533 5829 0 1393 P 66 * * * * * * * * 6046 5822 * * 134 5047 * 6223 * 6332 * * 66 28 5677 * 0 * 481 1818 5786 1000 1849 F 67 4017 * * 5183 7073 6783 * 4710 6051 1047 4969 5264 * 5134 6026 2592 4308 5514 * 5866 67 23 6010 * 2437 295 * 0 5851 1535 1000 F 68 * * 3247 1411 4467 * 6559 3203 4294 3765 6482 5759 * 3527 6278 * 4533 4127 * * 68 0 * * * * * 0 5851 0 1000 A 69 5365 6916 2701 4347 * 3573 3801 * 5831 * 5167 2411 2557 5620 5442 3262 4713 * * 5666 69 37 5320 * 1484 638 * 0 5851 1775 1000 R 70 6619 * 4081 3152 4861 * 5794 4619 1930 4990 5653 2559 * 4613 4127 5274 5149 3810 * 5779 70 11 7054 * 3459 138 * 0 5851 1000 1000 F 71 5306 6550 * * 4152 * * 1766 * 3142 3153 6414 2326 * * 4203 * 3028 * * 71 0 * * * * * 0 5851 0 1000 K 72 6399 * * 2665 3694 * 4422 3455 4571 3740 * 2485 * 4054 5501 * 4385 3369 4873 4090 72 0 * * * * * 0 5851 0 1000 L 73 * * * * 3110 * * 1759 * 1260 3656 * * * * * * 3445 * * 73 47 5826 6111 1000 1000 * 0 5851 1000 1000 R 74 * * 6520 5971 6734 * 6256 5411 2551 6945 * * * * 1078 6409 3117 3900 * 3630 74 9 * 7266 * * 742 1315 5821 0 1486 I 75 * * * * * * * 982 * 2677 5722 * * * * * * 1650 * * 75 16 * 6545 * * * 0 5862 0 1475 Q 76 * * * 5208 * * 5017 5035 2382 6966 * 5405 * 1190 2798 4871 4625 6207 * 5823 76 49 5994 5813 4136 84 * 0 5846 1677 2031 T 77 4123 5238 5817 * * * * * 6092 6088 4164 * 5065 * * 5738 625 3316 * 5963 77 46 5444 6931 1893 453 1793 491 5831 1657 2342 T 78 4856 6093 1930 4766 * 5674 6134 5969 2312 5952 * 3404 * * 3875 4490 3683 3986 * 4786 78 40 * 5207 * * 1906 448 5841 0 2140 E 79 5579 * 3285 3809 * 1622 * * 3880 * * 4541 4285 5705 4179 2224 5768 6468 * * 79 90 5476 4720 3469 137 182 3075 5837 1553 2783 G 80 4389 * 2829 4412 6104 2140 * * 3368 * * 3470 * 4054 6599 2669 3565 6355 * 6438 80 216 6819 2940 0 * 643 1475 5815 1000 2743 Y 81 3998 5566 * 4056 6300 5251 4670 2533 2943 5304 5635 6748 4900 4997 4368 3457 3826 3352 * 4389 81 156 5840 3558 1000 1000 210 2883 5774 1000 4295 D 82 3811 * 2244 4816 * 5717 * * 4229 6950 * 2976 4190 5568 6028 2532 2248 * * * 82 93 4729 5335 3005 192 137 3469 5724 2428 3194 P 83 2360 6325 * * * 5676 * 4117 6895 6096 * * 684 * * 6049 6788 4447 * * 83 40 * 5193 * * 249 2657 5850 0 2124 K 84 5128 * 5482 3397 4647 * * 3855 2736 2487 6972 6842 6024 4173 3239 6415 4122 2962 * 5281 84 0 * * * * 0 * 5824 0 1996 D 85 4784 * 1820 1795 * 5797 * * 2676 5092 * 5168 * 3954 * 5384 3967 6921 * * 85 13 6852 * 1000 1000 * * 5851 1000 0 A 86 1258 4202 * 5344 * * * 3373 * 3630 * * 5573 * * 4742 5268 2051 * * 86 0 * * * * * * 5851 0 0 L 87 * * * * 3676 * * 2517 * 906 3586 * * * * * * 3051 * 6754 87 0 * * * * * * 5851 0 0 K 88 5177 * 5469 2990 * 5620 * 4481 1876 2936 6342 5302 7256 3773 3263 5817 3822 4450 * * 88 0 * * * * * * 5851 0 0 N 89 4856 * 2569 2422 * 5368 6342 * 2358 * * 3881 6528 4063 3052 3739 5427 * 5539 * 89 0 * * * * * * 5851 0 0 A 90 753 4913 * * * 2730 * 4720 * 6106 * 5315 * * * 3951 4377 4957 * * 90 0 * * * * * * 5851 0 0 C 91 2593 3263 * * 5083 * * 2354 * 1725 5766 6004 * * * 4395 5520 3333 * * 91 0 * * * * * * 5851 0 0 N 92 5242 * 2915 2124 * * 5484 * 2611 6573 * 4032 * 3166 3826 3811 3690 5420 * * 92 0 * * * * * * 5851 0 0 S 93 5022 4853 2013 3306 * 4899 5737 * 3138 6563 * 3748 * 4211 3244 3147 5079 * * 4925 93 0 * * * * * * 5851 0 0 I 94 5417 6675 * * 5547 * * 2507 * 773 5092 * * * 6303 6569 5832 3130 * * 94 22 * 6061 * * * * 5851 0 0 I 95 3715 * 4943 3502 * 6076 7092 2300 3318 3918 4843 5815 * 5078 3171 3320 6177 4125 * 4411 95 0 * * * * 0 * 5762 0 1000 N 96 3796 * 2946 3012 * 4296 6527 6319 2969 5707 6958 3207 * 3439 4991 3198 3806 4933 * * 96 17 * 6379 * * * * 5788 0 0 K 97 5903 5259 2718 2641 * 6237 6884 3501 4440 3109 3869 5696 * 3886 4874 5438 4242 3953 6288 5058 97 0 * * * * * 0 5779 0 1000 L 98 3713 1934 * * 3109 6867 * 3877 * 2184 5173 7292 * * * 4683 3787 4681 * 3943 98 0 * * * * * 0 5779 0 1000 G 99 4095 * 2258 2189 * 3177 6429 * 3820 5422 * 3619 * 3874 6176 3508 4831 6597 * * 99 0 * * * * * 0 5779 0 1000 A 100 4006 * 3001 2481 * 6494 2846 3676 5363 4931 * 4364 * 4150 * 4266 3506 3873 * 4832 100 0 * * * * 0 * 5779 0 1000 L 101 5207 * * * 2425 * * 2340 * 1329 4181 * * * * * 4594 3401 * * 101 0 * * * * * * 5788 0 0 K 102 5904 * * 2534 7040 3759 6469 4123 2121 2635 5595 5581 * 4217 3524 4739 4779 6217 * * 102 0 * * * * * * 5710 0 0 T 103 4042 * 2891 3024 * 5805 6397 * 2606 * * 3595 * 3662 2713 3185 4202 6805 * * 103 0 * * * * * * 5718 0 0 N 104 3909 * * 2127 * 5988 * * 2844 4629 * 3713 * 3072 3906 3086 3358 4970 * * 104 0 * * * * * * 5662 0 0 F 105 * * * * 495 * * 5576 * 2788 * * * * * * * 6314 5873 3396 105 0 * * * * * * 5399 0 0 E 106 3858 * 2890 2624 * 6290 * 4466 2840 5304 5030 3097 * 3373 4719 4792 3632 6363 * * 106 0 * * * * * * 5357 0 0 T 107 * * 3524 2680 * 5828 * * 1764 * * 4050 * 4048 2709 3076 4249 * * * 107 0 * * * * * * 5232 0 0 E 108 1834 * * 1089 * 5027 * * 2735 * * * * 4470 * 5411 * * * * 108 0 * * * * * * 5108 0 0 W 109 4006 * * * 3156 * * 2248 * 2399 5066 * * * * * * 2903 2660 3270 109 0 * * * * * * 5027 0 0 N 110 5376 * 4813 1326 * * * * 3348 4508 * 3461 * 2865 * 2546 * * * * 110 0 * * * * * * 5027 0 0 L 111 2752 * * 2867 3966 3601 * * 3888 1585 * 3803 * * 3389 * * * * * 111 0 * * * * * * 3995 0 0 Q 112 3888 * * * * * * * 899 * * * * 4263 1539 * * * * * 112 0 * * * * * * 3995 0 0 T 113 * * * 3436 * 3111 * * 2383 * 3507 * * 3753 2104 3121 3467 * * * 113 0 * * * * * * 3002 0 0 L 114 * * * * * * * 1460 * 2067 1803 * * * * * * 3171 * * 114 0 * * 0 * * * 2852 0 0 //