HHsearch 1.5 NAME c9n4zF_ FAM FILE c9n4zF_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9n4zF_.a3m DATE Sat Mar 22 17:09:14 2025 LENG 100 match states, 100 columns in multiple alignment FILT 113 out of 479 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.7 EVD 0.4463 0.2936 SEQ >ss_pred CCCCCCCCCCCCCCCCCHHHHHCCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEEECCHHHHHHHCC >ss_conf 9875456778654411113762770389999954786199995479997998687778808999999899999999999977799986219889874049 >Consensus axfxxxxxxxxxxxxxxlxxlxxixvxlxxxlgxxxltlxellxLxxGdvixLxxxxxxxvxlxvxgxxixxGxlgxxxxxxavrItxxxxxxxxxxxxx >c9n4zF_ AVFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS >UniRef50_Q3ADB8(240-332:335) Flagellar motor switch protein FliM n=6 Tax=Clostridia RepID=Q3ADB8_CARHZ E=9e-06 s/c=0.55 id=19% cov=93% --FSHATAADREAFARHMEgFLAESELEVSAILGGTELRVREFLKIEVGDIVVLNRKVDEELELFVEDQKLFKVQPGRVGEKLCCQITGMIERDE----- - >UniRef50_Q0EZ62(238-327:330) Flagellar motor switch protein FliM n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ62_9PROT E=7e-06 s/c=0.57 id=20% cov=88% ------GDTDMEWTNGLMQRLSQTPAALRFELGRCQIDIGAFLKMMPGDFLPISTRANDPCSLWIDEIPLFQATPGEKNGGLAAEITEPVQPG------- >UniRef50_B2IJZ9(220-304:313) Flagellar motor switch protein FliM n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IJZ9_BEII9 E=3e-05 s/c=0.58 id=15% cov=71% ------------------------EVEVRAIIEDSHFVLGDFTELKIGQVLPLQATTKSRAKLECNAEPLFWCQVGQEDGFYTLRVEDFIDQEK------ >UniRef50_A9CYK4(224-312:315) Flagellar motor switch transmembrane protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CYK4_9RHIZ E=0.0005 s/c=0.51 id=16% cov=44% -------------------------INLQAAVALAPLPVGEISRLQVGDLIGFAQTGDIEVTLSANGK-------------------------------- >UniRef50_Q4JMS1(236-314:321) Predicted flagellar motor switch protein n=2 Tax=Bacteria RepID=Q4JMS1_9BACT E=3e-06 s/c=0.67 id=21% cov=47% ------------------RAVLNIPLPVTARLGQPVVSMYNLINMQVGDTFPI--TIGEGVEVRID---------------------------------- >UniRef50_Q72WG8(338-426:484) Type III secretion system protein, YopQ family n=4 Tax=Desulfovibrio vulgaris RepID=Q72WG8_DESVH E=6e-10 s/c=0.73 id=21% cov=90% ---SPMSDQQTPEVPAGLDT-AALEVDIVFELERRTMKLNDLAALAPGYTFALGTDPLAPVTLRVQGRNIGRGRLVDLDGTPGVQVLHLESAS------- >UniRef50_C5CYE9(211-298:322) Surface presentation of antigens (SPOA) protein n=1 Tax=Variovorax paradoxus S110 RepID=C5CYE9_VARPS E=2e-07 s/c=0.65 id=22% cov=87% AAKPPLRSGDHLLPKEPLDqALADRRVALRVMLKGAELNLGQLQELRVDDVVPLEHLLDAPAHVVgADGGRVCDGWLGQSDGRMAIEL------------ -- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 3498 0 0 V 2 1664 * * * * * * * * 3103 * * * * * * 1988 1662 * * 2 0 * * * * * * 4348 0 0 F 3 * * * * 493 * * * 4065 4326 * * 3898 * * 4140 * * 4162 * 3 0 * * * * * * 5628 0 0 Q 4 2681 * 4363 4678 * 4686 * * 4678 * * * 2022 2641 * 2105 4662 * * * 4 0 * * * * * * 6073 0 0 Q 5 4822 * 3037 3244 * * 4741 * * * 4326 2870 1690 3330 3821 4920 * * * * 5 0 * * * * * * 6251 0 0 L 6 2471 * 4923 * 2427 * * * * 2038 3837 * * 3897 * 4750 5022 3175 4590 * 6 0 * * * * * * 6305 0 0 G 7 5405 * 3274 4323 * 1990 5323 * * 4933 * 5227 4826 3949 4191 2261 3320 5423 * * 7 0 * * * * * * 6615 0 0 G 8 2819 * 2848 2490 * 2181 * * 5431 * * 5488 * 3396 3622 3646 5696 * * * 8 0 * * * * * * 6759 0 0 G 9 1763 * 4763 3384 5307 2590 5321 * 4733 * * 5244 5316 3190 5315 5352 3632 5185 * * 9 0 * * * * * * 6858 0 0 D 10 3025 * 2126 3714 6122 3939 5653 * 3230 * * 3980 3029 4724 4116 5719 5332 4619 * * 10 0 * * * * * * 7025 0 0 V 11 3993 * 4560 * * 5779 4578 4089 5260 4468 4488 3793 2631 3584 5596 3533 4555 2534 5579 * 11 0 * * * * * * 6998 0 0 S 12 2883 * 4133 2754 * 4244 5789 * 4743 5525 * 4628 3491 3602 3900 3378 3317 5316 6233 5995 12 27 5769 * 1000 1000 * * 6967 1000 0 G 13 3114 * 3652 2163 5763 2963 5983 5919 5691 4659 * 5811 3817 5805 5894 3978 4729 4135 4009 * 13 0 * * * * * * 6967 0 0 A 14 3258 * 3488 3651 5612 4728 * 3608 4018 4950 * 4095 4127 3748 3987 3106 3246 5823 * * 14 0 * * * * * * 6967 0 0 M 15 3092 * 5931 4336 5606 3925 * 3978 2936 4367 5089 5356 2610 * 3152 3688 * 4107 * 5499 15 0 * * * * * * 6934 0 0 Q 16 2537 6032 4359 2284 * 5405 * * 3407 5376 * 3304 4945 3546 2931 4318 5984 * * * 16 69 6004 4993 0 * * * 6944 1000 0 D 17 5944 * 2744 5640 * 5154 4982 4261 4725 3252 5472 2534 3570 5696 4757 3027 4179 5665 5243 * 17 91 4034 * 1000 1000 978 1022 6719 2328 1741 I 18 3895 * 5889 5938 6231 * * 3519 4840 1243 2756 5788 5076 * * 5557 4173 4316 * 5726 18 0 * * * * 0 * 6514 0 1000 D 19 4428 * 2420 2291 * * 5716 * 4665 * * 3141 3912 3183 5246 2921 4625 6059 * * 19 43 5085 * 0 * * * 6786 1780 0 L 20 2389 * * 4557 4559 4544 6453 4495 6397 2215 5796 4409 3952 4393 3645 4050 4697 5145 * 6167 20 83 4506 6416 593 1569 * * 7013 2341 0 I 21 5082 6348 * * 5349 * 5704 1941 * 1193 6424 6532 * 5776 * * * 2609 6375 * 21 22 6050 * 1000 1000 0 * 7061 1000 1000 M 22 4170 * 4055 2957 6487 4100 5558 * 3610 2461 3684 3646 * 4800 4390 3309 5769 5514 * 5727 22 26 5820 * 2000 415 * * 7061 1633 0 D 23 3973 * 1840 3806 * 4151 5302 * 4131 * * 2508 * 2408 5683 3984 * * * * 23 55 4728 * 1042 959 * * 7102 2337 0 I 24 3236 * * * 6498 * * 2032 * 2719 4226 * * * 6074 4606 3231 1886 * * 24 19 6229 * 1585 585 * * 7173 1000 0 P 25 5032 * 3537 2332 7225 6913 * * 3004 * 6626 5344 1723 4644 3824 4243 4808 * * 6947 25 16 6530 * 0 * * * 7102 1000 0 V 26 4561 5323 * * 6712 * * 2838 6495 2500 4704 * * 5497 * * 6357 936 * * 26 0 * * * * * * 7115 0 0 K 27 4305 * 3183 2400 * 5044 6784 * 3932 4389 * 4328 2794 4186 3593 5809 2855 6755 * * 27 0 * * * * * * 7195 0 0 L 28 4965 * * * 5541 * * 2342 * 1207 4857 * * * * * 5498 1946 * * 28 0 * * * * * * 7199 0 0 T 29 4966 6813 3842 2909 * 5881 5566 6411 4555 * 5446 4066 * 5593 2836 2409 3083 3416 6800 6438 29 0 * * * * * * 7199 0 0 V 30 1535 6944 * * 2533 5317 * 3950 * 4146 6461 * 6072 * * 7165 6653 1812 * * 30 20 * 6152 * * * * 7199 0 0 E 31 5730 * 5584 2072 6585 * 7247 3508 4884 4240 5223 5060 * 4657 3043 4903 4830 2162 * 5573 31 0 * * * * * 0 7172 0 1000 L 32 5591 6461 * * 3510 * * 2752 * 858 4386 * * * * * * 3055 6411 * 32 0 * * * * 0 * 7185 0 1000 G 33 2331 5338 4507 4420 5728 1102 6805 * 5625 5431 6715 7681 4662 5195 6625 5225 7099 6354 * 6487 33 0 * * * * * * 7212 0 0 R 34 5070 6794 3994 2825 * 4703 4394 6200 3032 5148 * 5235 5291 3775 2588 3258 3355 6208 * * 34 0 * * * * * * 7212 0 0 T 35 3119 5583 * 5688 6764 5563 6354 4119 3715 2904 5766 5732 4444 4352 3994 4002 2444 3587 * 6589 35 0 * * * * * * 7212 0 0 R 36 6889 * 3958 2622 * 6200 5710 6188 2578 * 6848 3809 6763 3343 3356 3363 2954 5069 * 6720 36 0 * * * * * * 7212 0 0 M 37 6812 7035 6642 7024 4015 * * 2385 5355 1569 2576 * 6982 * 6704 6814 4480 3157 * * 37 0 * * * * * * 7212 0 0 T 38 5757 6185 5226 5558 * * * * 4060 4748 6518 4544 2463 * 4778 2171 1654 6482 * * 38 0 * * * * * * 7212 0 0 I 39 5485 * * * 4531 * * 2561 * 1090 4508 * * * * 6777 5941 2221 6453 * 39 0 * * * * * * 7212 0 0 K 40 3304 * 3248 3322 * 2771 5263 * 3326 * * 3450 * 4677 2809 3316 5170 6317 * 7102 40 0 * * * * * * 7212 0 0 E 41 5234 * 1916 1369 6275 7227 6517 * 4839 * * 5395 * 2668 5109 6761 4775 * * * 41 0 * * * * * * 7212 0 0 L 42 5145 * * * 3717 * * 2484 * 1192 4483 * * * * * * 2093 * * 42 0 * * * * * * 7212 0 0 L 43 3383 5542 * 3896 * 6665 * 4307 4650 1199 4605 4985 6814 6507 4009 4347 4400 5122 * * 43 0 * * * * * * 7212 0 0 R 44 2544 * 4345 3087 * 3144 4629 * 3559 * * 2934 * 3705 3537 3057 6716 * * * 44 0 * * * * * * 7212 0 0 L 45 * * * * 4293 * * 4403 * 672 2905 * * * * * 6827 6156 3205 6769 45 0 * * * * * * 7212 0 0 T 46 3213 5506 5562 3627 * 3756 5125 6589 2324 * 6612 6185 6814 2883 2486 4305 4600 6754 * 7119 46 0 * * * * * * 7212 0 0 Q 47 3353 * * 2539 * 7056 * 6482 3163 * * 6427 2287 5286 4823 4457 5878 1945 * * 47 0 * * * * * * 7212 0 0 G 48 * * 5004 6752 * 164 * * 6607 * * 4779 * 6487 * 6764 * * * * 48 0 * * * * * * 7212 0 0 S 49 3609 * 993 5193 6642 * 5829 * 6554 * 6636 6791 * 3454 * 2912 3623 * * 5289 49 0 * * * * * * 7212 0 0 V 50 6704 * * 6074 4692 * * 2032 5970 3156 5678 * * 5722 6590 * 3313 1269 * * 50 19 * 6228 * * * * 7212 0 0 V 51 6859 * * * 4016 * * 1272 * 1655 * * * * * * * 2515 * 5441 51 0 * * * * * 0 7083 0 1631 A 52 4164 * 3785 2674 * * 7109 5029 3693 4846 5332 5455 1941 5618 4136 4113 3802 4578 * 6896 52 0 * * * * 0 * 7083 0 1631 L 53 5951 6471 * * 3274 6326 * 2901 * 754 4749 * * * * * 4115 4828 * * 53 22 * 6027 * * * * 7212 0 0 D 54 5626 6318 1949 2778 * 3645 5284 * 5674 6881 * 3295 2682 3834 5515 4479 5540 6317 * * 54 30 * 5612 * * * 0 7077 0 1800 G 55 3690 7377 4612 4074 6816 4739 4810 5588 2322 4441 5655 5624 5543 4112 3727 4037 3355 3551 5125 * 55 0 * * * * 371 2140 7113 0 2639 L 56 4901 * 3958 5181 5766 5477 4444 6319 3401 4298 6012 3283 2783 5685 3538 2945 3703 4810 * 5759 56 103 7042 4035 0 * 0 * 7216 1000 1000 A 57 2043 4941 * 6231 6395 6226 * 2765 4461 3426 4876 6564 4110 3858 6926 5226 4277 2809 * * 57 21 6087 * 931 1073 * 0 7299 1750 3361 G 58 5458 * 2289 3410 5042 3659 5069 * 4290 3615 * 3085 5683 4416 5473 3325 3841 6567 * 5669 58 50 * 4877 * * 0 * 7299 0 3361 E 59 4414 6640 2105 1954 * 3710 5637 * 5789 6460 * 5561 4946 4460 4340 3226 4042 6563 * * 59 13 6854 * 0 * * 0 7161 1000 2256 P 60 4540 6770 3504 3001 6251 5826 3900 5525 5309 4666 5396 5257 1882 3734 4354 4130 4746 * * 6494 60 44 5065 * 1199 825 0 * 7161 2223 2256 L 61 3127 4987 * * 5828 * * 2574 * 2490 6098 * 6656 * * * 6437 1138 * * 61 9 7331 * 0 * * * 7130 1000 0 D 62 4441 * 3446 2286 6653 7266 5796 5181 3261 5261 5476 5003 4651 4583 3433 3841 3051 5211 6291 7185 62 0 * * * * * * 7130 0 0 I 63 5275 * * * 6574 4600 * 2311 * 1247 5650 * * * * * * 1839 * * 63 15 6629 * 0 * * * 7130 1000 0 L 64 4773 3890 6170 3874 4912 * 6483 5192 3765 2954 4634 5636 * 4682 3101 5067 4529 3971 6597 2503 64 57 4702 * 0 * * * 7130 2398 0 I 65 2473 3662 * * 4871 * 6537 2759 * 3372 * * * * 6629 5617 4735 1423 6548 * 65 38 5279 * 1012 988 * * 7130 2036 0 N 66 5002 * 3108 2711 * 2325 5237 * 6506 6443 6095 1483 * 4568 * 4756 * * * * 66 0 * * * * * * 7070 0 0 G 67 5601 6322 2834 4068 * 1092 6836 * 5329 * * 2339 * 5311 * 5318 5913 * * * 67 0 * * * * * * 6972 0 0 Y 68 4437 * * 4199 * 6488 3934 3924 3226 4183 4315 * 6555 2621 2870 4634 5139 2643 * 7361 68 0 * * * * * * 6953 0 0 L 69 6354 5615 4920 4435 6557 6759 * 5116 3764 2762 * 6967 1875 5296 3565 4371 3661 3316 * * 69 0 * * * * * * 6963 0 0 I 70 6160 6890 * * 3766 * * 1993 2970 2267 5257 * * * 5743 * 5590 2167 5812 6446 70 0 * * * * * * 6963 0 0 A 71 1544 5435 * * 1737 2322 6545 * 6867 6046 5573 * * * * * * 6204 * 3943 71 0 * * * * * * 6951 0 0 Q 72 * * 5079 3613 6420 * 4625 5894 2623 4178 5406 5631 * 3870 2297 4183 3505 4564 4408 4213 72 0 * * * * * * 6951 0 0 G 73 2890 3288 * * * 478 * * * * * * * * * 5236 * 5765 * * 73 0 * * * * * * 6950 0 0 E 74 * * 4848 1552 * 6588 4753 5032 3226 7167 6252 6522 * 3054 3163 3910 4567 4651 6433 5957 74 12 6916 * 0 * * * 6965 1000 0 V 75 3911 6327 * * 3968 * * 4152 * 1075 4163 * 3932 * * 6664 6669 2797 * 4594 75 0 * * * * * * 6965 0 0 V 76 * 6825 * 4801 * 1057 * 3449 * 4361 4800 * * 6257 * * 6730 1857 * * 76 14 6660 * 0 * * * 6965 1000 0 V 77 3421 * 4946 3595 6207 * 5977 4592 3639 4344 5131 4920 * 3066 3036 4266 3841 2683 * 6558 77 0 * * * * * * 6965 0 0 V 78 6507 5382 5557 5654 4472 5731 4279 2915 4000 3174 4648 5827 * 4747 5677 2916 5006 2288 * 5639 78 0 * * * * * * 6965 0 0 A 79 4787 * 1945 4411 * 2012 6777 * 5025 * * 2275 * 4791 3409 4944 * * * * 79 28 5685 * 1282 764 * * 6965 1679 0 D 80 6520 * 2049 2785 6657 1474 * * 4344 * * 3902 * 5835 5556 3957 * 6250 * * 80 58 4670 * 861 1153 * * 6965 2499 0 K 81 5594 * * 4870 4993 5698 3395 * 2197 * 5495 3460 * 3712 2099 4145 4333 4611 * 6454 81 0 * * * * * * 6965 0 0 Y 82 4784 * * * 2979 * 6663 5198 3964 1911 4294 * 5697 * 2902 * 6256 3491 6574 2708 82 12 6868 * 0 * * * 6965 1000 0 G 83 967 6604 * * * 1922 * * 6256 6332 5287 * * * * 3905 5039 4244 * 6251 83 0 * * * * * * 6965 0 0 V 84 4566 5575 * * 5867 * * 2545 * 2252 5351 * * * * * * 960 * * 84 0 * * * * * * 6965 0 0 R 85 * * * 3171 * * * 6615 2482 * 5287 * * 2422 1143 6047 5682 * * * 85 0 * * * * * * 6965 0 0 I 86 * * * * 6171 * * 936 * 2202 6200 * * * * * * 2104 * * 86 16 6537 * 0 * * * 6944 1000 0 T 87 4140 * 4710 3607 * 5601 5427 5611 3854 3672 * 4952 * 6881 6510 3228 1413 3698 * * 87 0 * * * * * * 6860 0 0 D 88 5490 * 2799 1525 * 6134 5441 * 4015 * * 4597 6154 3268 2867 4267 4671 * * * 88 0 * * * * * * 6821 0 0 I 89 5872 6234 * * 4566 * * 2260 5149 1900 3686 6073 4158 6300 5357 5311 4984 2719 6084 6208 89 24 5950 * 0 * * * 6723 1000 0 I 90 3218 * * 6026 4636 4015 * 2018 * 2252 6123 * * 5936 5840 * 3779 2499 * 5616 90 0 * * * * * * 6634 0 0 T 91 3574 * 2557 3301 4737 5937 * * 4782 * 6058 4283 5168 3206 5335 2245 3106 * * * 91 0 * * * * * * 6585 0 0 P 92 3738 * 5741 2867 * 5973 5556 * 3391 5708 * 4638 1832 3796 3305 4345 3750 * * * 92 0 * * * * * * 6532 0 0 S 93 3417 * 3463 1902 * 3388 * * 3091 * * 5728 4147 3389 * 2832 5389 * * * 93 37 * 5321 * * * * 6474 0 0 E 94 3779 * 2477 1290 5488 * * * 3256 * * * 4389 3539 3685 * * * * * 94 0 * * * * 0 * 6191 0 1000 R 95 * 4418 * 2748 * 3265 * 3423 2687 * * * * 3300 2856 4241 4382 3167 * * 95 0 * * * * * * 5180 0 0 M 96 * * 3952 4069 * * * 2534 * 2157 2090 * * * * * * 2035 * * 96 0 * * * * * * 4934 0 0 R 97 3558 * 3662 3644 * * 3465 * 2645 * * * * * 1583 3479 * * * 3603 97 0 * * * * * * 4369 0 0 R 98 * * * * * 3286 1659 * 3399 * * * * * 2486 2270 * * * 3321 98 0 * * * * * * 4140 0 0 L 99 * * * 3135 * * * 1369 * 1416 * * * * * * * 3008 * * 99 0 * * * * * * 3711 0 0 S 100 1515 * * * * * * * * * * * * * * 621 * * * * 100 0 * * 0 * * * 2099 0 0 //