HHsearch 1.5 NAME c9mu7E_ FAM FILE c9mu7E_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9mu7E_.a3m DATE Sat Jan 10 08:26:25 2026 LENG 84 match states, 84 columns in multiple alignment FILT 54 out of 56 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.3 EVD 0.4325 0.9881 SEQ >ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEHHHEEECC >ss_conf 987775411564112233333454545544159842672688748999999999729996899997899978887766625739 >Consensus gxipxxxrxtxpxLTkfExARIiGxRAlQisxgApxxixxxxxxdplxIAxxElxxxxiPixIrRxlPxGxyEdxxvxeLxxxx >c9mu7E_ GGVPKSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVD >UniRef50_P0C9D6(64-147:151) DNA-directed RNA polymerase subunit 6 homolog n=8 Tax=African swine fever virus RepID=RPB6_ASFM2 E=3e-13 s/c=0.91 id=31% cov=95% --IPDNERITSNVLTTFEATRLVAVRAQQLAINGSTMLKKKYSS-PIDIAKQELFNRKIPLLVMRcikVTPEGQkiVEIWNPREMGI-- >UniRef50_B1L6H7(2-66:84) DNA-directed RNA polymerase, subunit K n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L6H7_KORCO E=3e-08 s/c=0.92 id=40% cov=74% ----NSDLLGPKRLTKFEKVRIISVRAQQIATGSPLFLEeneiPEGLTDPIELAKLELEKGKLPILIGR------------------- >UniRef50_Q6W391(95-166:168) Predicted DNA-directed RNA polymerase IIb n=2 Tax=Archaea RepID=Q6W391_9CREN E=1e-15 s/c=1.17 id=43% cov=86% --------VGPITLTRFEKARIMGARALQLSLGAPVFVEIpKNTTTSLQIAMEELKKRVIPIVIKRTLPNQDYQNIPLDK----- >UniRef50_Q4QA82(23-120:129) Putative uncharacterized protein n=3 Tax=Leishmania RepID=Q4QA82_LEIMA E=6e-16 s/c=0.87 id=37% cov=96% --TPFVERRSGLYLTKFEVARIIGERAKQIASGAAMSLPGTGSgldsvetaerctnprslaVDPVMMAKYDLLQRKIRMLVRRVWPDGAVETIPVNELMV -- >UniRef50_D2TEV8(6-74:81) Putative RNA polymerase Rpb6 n=2 Tax=dsDNA viruses, no RNA stage RepID=D2TEV8_9VIRU E=4e-11 s/c=1.00 id=33% cov=83% ---------TSSYLTRFELARLAGIVELQLQDNKTSVIDSSKTLH--DQAVDIVLNKETDIVIRRILPGDSYEDVSLKTL---- >UniRef50_A6UVZ8(4-55:61) RNA polymerase Rpb6 n=7 Tax=Methanococcus RepID=A6UVZ8_META3 E=2e-08 s/c=1.16 id=45% cov=63% --------------TKFEKARLLGSRALQISDGAFATVESEEKSSGV-IAMNEFKQGKLPLKVKKPL----------------- >UniRef50_UPI0001C41D13(4-69:72) DNA-directed RNA polymerase subunit K RpoK n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41D13 E=2e-08 s/c=0.91 id=41% cov=70% ------KKSTAKKLTRFEKARVLGARAIQLSMGAKPMehkeiekfIKNSKSLDPIDIATLELELGILPLDVR-------------------- >UniRef50_Q5UQ32(181-262:396) DNA-directed RNA polymerase subunit 6 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RPO6_MIMIV E=2e-21 s/c=1.26 id=40% cov=98% --IPDNERETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEGMHPAKMAFVELTAKMTSFIVRRHLPGKKYEDWRIDELGMI- >UniRef50_Q8ZTF9(22-103:106) DNA-directed RNA polymerase subunit K n=5 Tax=Thermoproteaceae RepID=RPOK_PYRAE E=1e-15 s/c=1.03 id=37% cov=96% ----NKREFYPPRLTKYETARIIGARALQLAMGAQPLVDIQevGSVDPVLIAMEELRRGLLDFIIVREMPDGKTMRIRLKELLELE # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1722 0 0 G 2 * * * * * 943 * * 1774 * * * * * 2415 * * * * * 2 0 * * * * * * 1748 0 0 V 3 * * * * * * * 1248 * 3379 * * * * * * 2329 1816 * * 3 0 * * * * * * 2815 0 0 P 4 3509 * * * * * * * 3296 * * 4131 467 5058 * * * * * * 4 0 * * * * * * 2803 0 0 K 5 4280 * 2170 * 3821 4911 * * 2699 4002 * 2014 * 5382 5291 * 4755 * * 3798 5 0 * * * * * * 2962 0 0 S 6 * * 2721 3750 * * 5026 * 2430 * * 2303 3886 5506 * 2503 5507 3901 * * 6 0 * * * * * * 3022 0 0 K 7 * * 2579 1480 * * * 4705 2177 5273 * * 4242 4822 4398 * 4876 5708 * * 7 0 * * * * * * 3094 0 0 R 8 * * * 4811 * * 4332 * 2837 4581 * * * * 448 * * * * * 8 0 * * * * * * 3091 0 0 I 9 * * * 3932 3781 * * 1497 3029 4052 4240 6799 * 6244 3884 5109 3599 3827 * * 9 61 * 4596 * * * * 3177 0 0 T 10 5236 * * * 5233 2446 * * * * * 6870 * * * 2975 734 * * 5231 10 0 * * * * * 0 3318 0 1000 T 11 5196 * 4054 * * 4413 * * * 4298 * * 1700 * * 1853 2425 * * 4509 11 0 * * * * * 0 3318 0 1000 K 12 * * * 5519 5233 * * 5513 3072 4413 * 4247 956 * 3544 3762 * 4783 * * 12 0 * * * * * 0 3318 0 1000 Y 13 * * * * 3155 * 5172 3188 3451 * * * * * 3613 * 4482 3764 5416 1200 13 0 * * * * * 0 3338 0 1000 M 14 * * * * * * * 4168 * 427 2457 * * * * * * * * 5764 14 0 * * * * 0 * 3268 0 1000 T 15 * * * * * * * * * * * * * * * 4878 50 * * * 15 0 * * * * * * 3330 0 0 K 16 * * * * * * * * 731 * * * * * 1802 5601 4544 * * 4408 16 0 * * * * * * 3372 0 0 Y 17 * * * * 959 * * * * * * * * * * * * * * 1042 17 0 * * * * * * 3372 0 0 E 18 * * * 0 * * * * * * * * * * * * * * * * 18 0 * * * * * * 3372 0 0 R 19 4544 * * * 5065 * * 3011 1527 3947 * * * 5527 1814 * 5827 3887 * * 19 0 * * * * * * 3372 0 0 A 20 191 * * * * * * * * * * * * * * * 4544 3623 * * 20 0 * * * * * * 3372 0 0 R 21 * * * * * * 5461 * 4059 * * * * * 153 * * 5793 * * 21 0 * * * * * * 3372 0 0 V 22 * * * * * * * 748 * 2338 * * * * * * * 2273 * * 22 0 * * * * * * 3372 0 0 L 23 3947 * * * * * * 1334 * 1459 4395 * * * * * * 2975 * * 23 11 * 6995 * * * * 3372 0 0 G 24 3778 * * * * 257 * * * * * * * * * 3468 * * * * 24 0 * * * * * 0 3374 0 1000 T 25 1617 * * 3881 * * * 3344 * * * * * * * 4542 1872 2385 * * 25 0 * * * * * 0 3374 0 1000 R 26 * * * * * * * * * * * * * * 97 * * 3946 * * 26 0 * * * * * 0 3374 0 1000 A 27 186 * * 3946 * * * * * * * * * * * 5243 5061 * * * 27 0 * * * * * 0 3374 0 1000 L 28 * * * * 5428 * * 5758 3846 613 5813 * * 3143 4088 * 5411 * * 5518 28 0 * * * * * 0 3373 0 1000 Q 29 * * * * * * * * * * * * * 0 * * * * * * 29 0 * * * * * 0 3374 0 1000 I 30 * * * * 4404 * * 807 * 1391 * * * * * * * * * * 30 0 * * * * * 0 3373 0 1000 A 31 1706 * * * * * * * * * 5061 4406 * 3946 * 936 * 5122 * * 31 0 * * * * * 0 3374 0 1000 M 32 5415 * 2986 * * * * 3559 5883 3185 1342 3704 * 6007 * 3931 5446 * * 3981 32 0 * * * * * 0 3374 0 1000 C 33 * 5513 * * * 546 * * * * * 1770 * * * * * * * * 33 0 * * * * * 0 3374 0 1000 A 34 363 * * * * 4541 * * 3946 * * 5045 * * * 4173 5122 * * * 34 0 * * * * * 0 3374 0 1000 P 35 4673 * * * 4991 * * * 3928 5938 * * 670 5815 5851 3434 3945 * * 5241 35 0 * * * * 0 * 3373 0 1000 I 36 3412 * * * * * * 3368 * 4432 4679 * 1659 * * 3946 4543 1740 * * 36 31 5548 * 0 * * * 3372 1000 0 M 37 * * * * 3097 * 5523 4592 * 1371 2778 * * 5823 * 4679 2906 3946 * 4945 37 27 5763 * 3000 193 * * 3372 1000 0 V 38 * * 5548 * * * * 1277 * 2904 * * * * * * 5957 1264 * * 38 32 5523 * 1585 585 * * 3372 1000 0 E 39 * * 1367 1942 * * * 5548 2989 * * 4470 2799 5974 * * * * * * 39 33 5446 * 2000 415 * * 3372 1000 0 L 40 * * 6104 * * 3536 * 2482 3951 2458 * 5763 3427 * * 2773 3137 3290 * * 40 41 5150 * 0 * * * 3372 1492 0 D 41 * * 3378 2111 * 4008 * * 2776 * * 4528 3540 4137 * 2520 4679 3951 * * 41 191 3214 5956 1137 875 * * 3372 2032 0 G 42 * 5249 4728 2482 * 1424 * * 2565 * * 3119 * * * 5828 4640 * * 4561 42 170 3691 4888 2921 204 0 * 3330 1791 1000 E 43 5906 * 4491 2091 * 3093 5508 5496 4324 3722 6229 * * 4640 6059 2285 2802 * * * 43 181 3082 * 3125 176 0 * 3336 2208 1295 T 44 4802 * 5945 * * * * 4233 5637 2869 4406 5418 * * 3711 2484 1768 3278 * 6010 44 63 * 4543 * * * * 3372 0 0 D 45 * * 640 5921 * * 3097 5707 * * * 4395 * * * 3365 4477 * * 5937 45 142 * 3413 * * 0 * 3294 0 1000 P 46 4606 * * * * 4873 * * * * * * 322 * * 3452 * 4893 * * 46 0 * * * * 970 1031 3182 0 1675 L 47 4296 * * * * * * 1920 * 1028 5465 * * * * * * 2542 * * 47 48 * 4925 * * 0 * 3205 0 1000 Q 48 4133 * 1790 3681 * 6090 5115 4896 3761 3369 4676 4616 * 3439 4607 4946 5948 4459 * 5569 48 0 * * * * 0 * 3302 0 1000 I 49 5084 * * * * * * 460 * 4484 3536 * * 3946 * * * 4393 * * 49 0 * * * * * * 3372 0 0 A 50 95 * * 5957 * * * * * * * * * * * 5736 5123 * * * 50 0 * * * * * * 3372 0 0 M 51 4956 * * 2694 3697 * * 4443 2795 4013 2417 5457 * 5883 3324 5957 5763 3557 6450 5245 51 0 * * * * * * 3372 0 0 K 52 6288 * 3946 1989 * 5934 * 5548 2130 3316 5457 4280 * 4062 4469 * * 4003 * 4007 52 0 * * * * * * 3372 0 0 E 53 * * 4679 158 * * * 3946 * * * * * * * * * * * * 53 0 * * * * * * 3372 0 0 L 54 * * * * 2608 * * 5235 * 571 * * * * * * * 3497 * 4396 54 0 * * * * * * 3365 0 0 K 55 4344 * 4100 2508 4539 * 5408 5631 2202 2892 * 5255 * 6553 3215 5010 4395 5235 * 5156 55 0 * * * * * * 3365 0 0 Q 56 2716 * * 3230 * * * * 3316 4852 * 2333 * 1958 3198 5557 5631 * * * 56 0 * * * * * * 3365 0 0 K 57 * * 5825 * * 1415 * * 1727 * * 3152 * * 2374 * * * * * 57 0 * * * * * * 3365 0 0 K 58 4677 * * 3940 * * * 3495 1313 3018 4395 * * * 4138 5408 6403 2821 * * 58 0 * * * * * * 3365 0 0 I 59 * * * * * * * 893 * 1892 5848 * * * * * 2938 4500 * * 59 0 * * * * * * 3365 0 0 P 60 * * 3592 * * * * * * * * * 268 * 4676 4395 * * * * 60 0 * * * * * * 3365 0 0 I 61 * * * * 2132 * * 1349 * 1969 3316 * * * * * * 5415 * * 61 0 * * * * * * 3365 0 0 I 62 * * 4760 * * * * 1363 3973 3104 * * * * * 3912 2191 3202 * * 62 0 * * * * * * 3345 0 0 I 63 * * * * * * * 876 * 5386 * * * * * * * 1213 * * 63 0 * * * * * * 3345 0 0 R 64 * * * * * 5398 * 3989 2841 * 4519 * * * 574 * * 4859 * 5376 64 0 * * * * * * 3345 0 0 R 65 * * * * * * * * 4925 * * * * * 48 * * * * * 65 113 4292 5374 1585 585 * * 3339 1000 0 Y 66 * * * 5388 5123 * 3615 3418 5152 * * * 4815 5269 2773 * 3755 2865 5370 1733 66 0 * * * * 0 * 3283 0 1000 L 67 * * * * 3452 * * 5040 * 681 5115 * * * * * 3249 * 3357 5451 67 0 * * * * * * 3418 0 0 P 68 * * * * * * * * * * * 5032 170 4828 * 4452 * * * * 68 0 * * * * * * 3415 0 0 D 69 * * 1315 3645 * 2704 * * * * * 1601 * * * 4828 * * * * 69 0 * * * * * * 3415 0 0 H 70 * * 3948 * * 363 5953 * 3463 * * * * 5399 * 5198 * * * * 70 0 * * * * * * 3415 0 0 S 71 4494 * 3804 5589 * 4851 * * 2087 * 5934 5384 * 3758 3555 1687 3840 * 6211 * 71 77 4270 * 1000 1000 * * 3415 1000 0 Y 72 * * * 3905 3453 4847 6361 5065 * * * * * * 4705 * 3885 2636 * 1005 72 0 * * * * * * 3389 0 0 E 73 * * * 403 * * * * * * 4914 * * 2869 * * * 3758 * * 73 0 * * * * * * 3389 0 0 D 74 * * 917 3874 * * * 4191 * 2958 * 3227 * * 4914 4847 4500 * * * 74 0 * * * * * * 3389 0 0 W 75 * * * * 4459 * * 1858 * 4847 * * * * * * * 2712 1143 4705 75 0 * * * * * * 3389 0 0 S 76 3823 * * 5369 4459 5318 5944 * 3078 * * 4191 1923 * 3523 2046 4255 * * * 76 0 * * * * * * 3389 0 0 I 77 * 5264 * * * * * 2426 * 1616 * * 4191 * * * 5964 1355 * * 77 0 * * * * * * 3389 0 0 D 78 6348 * 1749 4008 * 5002 * * 2593 * 4946 3102 * 4615 3570 3161 * * 4459 * 78 0 * * * * * * 3389 0 0 E 79 * 4737 * 559 * * * * 2934 * * * * 5915 4737 * 3921 * * 4939 79 0 * * * * * * 3375 0 0 L 80 * * * * * * * 3896 * 192 4114 * * * * * * * * * 80 0 * * * * * * 3387 0 0 I 81 4333 * * 3734 * 2951 4912 2001 4457 2753 3255 * * 3894 * 5587 * 3713 * * 81 0 * * * * * * 3227 0 0 M 82 * * 3955 2936 * * * 1679 * 4805 3233 * * * 4700 * * 1680 * * 82 0 * * * * * * 3013 0 0 V 83 3730 * * * * * * 1263 * 1379 * * * * * * 4105 3934 * * 83 0 * * * * * * 2618 0 0 D 84 * * 914 1999 * * * * * * * 2190 * * * * * * * * 84 0 * * 0 * * * 2422 0 0 //