HHsearch 1.5 NAME c9mqgJ_ FAM FILE c9mqgJ_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9mqgJ_.a3m DATE Sat Aug 9 09:42:28 2025 LENG 123 match states, 123 columns in multiple alignment FILT 64 out of 66 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.7 EVD 0.4135 -0.7052 SEQ >ss_pred CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHCC >ss_conf 9300121245666667778874323444321235899999888865344445521767540343564033235666654211552277778899986699 99999999999999999997239 >Consensus xlgflxaagsxmgaasxalxvqxxxllxxwGikqLqaRvxaxexylkdqxllxxwGcxxkxiChTxvpwnxswsnxsxxxiWxNmTWqqWekxIxnxtxx IyxlLeeaqxqqekNexeLxxLd >c9mqgJ_ SLGFLGAAGSTMGAASMTLTVQARNLLSHWGIKQLQARVLAVEHYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQI IYGLLEESQNQQEKNEQDLLALD >UniRef50_Q64G66(10-98:98) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G66_9HIV1 E=3e-17 s/c=1.00 id=45% cov=58% --------------------------------------VLAIKKYLKNQPLLGISGCSCKTHLHHCCTLGLYWSLQSQKKIQNHITYMQWNKKISNYTGT IYKLLNES--------------- >UniRef50_Q64G54(6-109:139) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G54_9HIV1 E=3e-06 s/c=0.51 id=32% cov=85% ---------------ATAYSCNSRSR----GIKQLQTRVLALGKIPKGSTAPRNLGLLWKTHLHHCCAVESSWSNKSQGAIWvTRLGWSAIEKLIITQT- HYTGCLKNRKTSRNKLKRDLLALD >UniRef50_Q64FP6(10-115:144) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q64FP6_9HIV1 E=3e-05 s/c=0.47 id=43% cov=40% ---------------------------------------------------------------------------NPLNEIWNNMTWQPWDKEISNFHTD IYSLIEDRRTSRKRMNRTYWHLD >UniRef50_Q64G85(20-116:145) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G85_9HIV1 E=4e-18 s/c=0.95 id=46% cov=78% ----------------------------GLGIKQLHARVLALERYLKDQQLLRDLGLLWKTHLHHCCaLGTVVGGNRTKDYIWDNMTWDAGGIEKLAITQ TQYtGWLEGIANPAGNKEKDLLALD >UniRef50_Q70IG7(527-672:864) Envelope glycoprotein gp160 n=3 Tax=Primate lentivirus group RepID=Q70IG7_SIVCZ E=8e-36 s/c=1.03 id=43% cov=99% -IGFLSAAGTVMGAVGTGLAVQSRDLLAGivqqqqellraveghsallqlsvWGIKNLNARLTAIEKYLKDQALLNEWGCAWKQICHTSVEWSNQSIPgl ALYQPDFQNMTWQQWETDIAALFGNVSDALKKAQAQQERNVHEVQSL- >UniRef50_B7FCA6(552-692:884) Env protein n=2 Tax=Simian immunodeficiency virus RepID=B7FCA6_SIVCZ E=2e-32 s/c=0.99 id=47% cov=97% -LGFLGLAGSAMGTVSTVLTIQSQHLLAGilqqqknllelvekqqellrltiWGVKNLQARLSAIEGFLEDQLKLKQWGCELTQVCHTNVPWNESW---N ATPNWNNETWQHWYRRTDELQANISVLLVEAHNTEQKNMFELQKL- >UniRef50_Q9DKV4(563-706:849) Envelope n=25 Tax=Ovine/caprine lentivirus group RepID=Q9DKV4_CAEV E=2e-16 s/c=0.60 id=29% cov=95% -MAIVAAAGASLGVAnaiqqsytrdavqtlANATAVQQQVLEASYamiqhvakGIRILEARVARMEVMMDRMMLYQEVDCwHYHQYCVTS-----TRADI VNYINWtrfkDNCTWQEWEREISAHEGNITILLKESARITQLAQQKVQRI- >UniRef50_Q3Y655(6-106:143) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q3Y655_9HIV1 E=2e-15 s/c=0.82 id=41% cov=78% ------------------LIVETHSLGALSSSRQ---ESSALERYLKDQQLLGIWGCSGNSSAPLLCLGTLV-GVINLSMIFGRTCLgCSGIEKLSNYTN TIYKLLEDSQIQQDNNEK------ >UniRef50_Q99FH6(518-659:837) Envelope glycoprotein n=1 Tax=Simian immunodeficiency virus RepID=Q99FH6_SIVCZ E=4e-30 s/c=0.93 id=47% cov=97% -LALLSGAGAAMGSASVALTIQAQSLngrasassnrmllklvetqsallqLTVWGVKNLQVRVATIEGYLEEQAKLASIGCANMQICRTIVPWNKTWGE- --EDPWQNMTWKQWHERVRNYTDIIEADLVEAYDLQEENEKKLAEL- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 1000 * * * * * * * * * * * * * * 1000 * * * * 1 0 * * * * * * 1414 0 0 L 2 * * * * * * * 3259 * 445 2980 * * * * * * 4879 * * 2 0 * * * * * * 2703 0 0 G 3 2196 * * * * 355 * * * * * * * * * * * * * * 3 0 * * * * * * 2703 0 0 F 4 * * * * 519 * * 2980 * 3445 * * * * * * * 3579 * * 4 0 * * * * * * 2703 0 0 L 5 * * * * * * * * * 195 * * * * * * * 2980 * * 5 0 * * * * * * 2703 0 0 G 6 2170 * * * * 1486 * * * * * * * * * 1249 * * * * 6 69 4416 * 1585 585 * * 2703 1000 0 A 7 457 * * * * 4120 * * * 4077 * * * * * * 2692 * * * 7 0 * * * * * * 2703 0 0 A 8 0 * * * * * * * * * * * * * * * * * * * 8 0 * * * * * * 2728 0 0 G 9 * * * * * 0 * * * * * * * * * * * * * * 9 0 * * * * * * 2728 0 0 S 10 2333 * * * * 5014 * * * * * * * * * 740 2540 * * * 10 0 * * * * * * 2770 0 0 T 11 1289 * * * * * * * * * * * * * * 3061 1324 3805 * * 11 0 * * * * * * 2770 0 0 M 12 * * * * * * * * * 3157 171 * * * * * * * * * 12 0 * * * * * * 2841 0 0 G 13 * * * * * 43 * * * * * * * * * 5074 * * * * 13 0 * * * * * * 2841 0 0 A 14 683 * * * * * * * * 4534 * * * * * 3094 3253 3157 * * 14 0 * * * * * * 2841 0 0 A 15 610 * * * * * * * * * * * * * 4346 * * 1758 * * 15 171 3157 * 3907 100 * * 2841 1000 0 S 16 1357 * * * * 3975 * * * * * * * * * 873 * * * * 16 0 * * * * * * 3171 0 0 M 17 * * * * * * * 3431 * 4694 4615 3361 * * * * 933 2273 * * 17 0 * * * * * * 3171 0 0 T 18 681 * * * * 4144 * 3905 * * * * * * * * 2373 4064 * * 18 0 * * * * * * 3348 0 0 L 19 * * * * * * * 3588 * 557 4330 * * * * * 3427 5576 * 3770 19 0 * * * * * * 3189 0 0 T 20 2648 * * 2973 * * * 3517 * * * * * * * 3233 1090 4330 * * 20 0 * * * * * * 3189 0 0 V 21 2143 3777 * * * 3970 * 3631 * 5057 * * * * * * * 926 * * 21 0 * * * * * * 3187 0 0 Q 22 * * 4352 3522 * * * * * * * 3777 * 396 5005 * * * * * 22 0 * * * * * * 3187 0 0 A 23 2242 * * * * * * * * * * * * 2128 * 1332 2619 * * * 23 0 * * * * * * 3187 0 0 R 24 * * * * * * 1998 * * * * * * 1829 1172 5353 * * * * 24 0 * * * * * * 3187 0 0 N 25 5238 * 4670 * * 5686 3408 * * 3258 4871 4813 * 3345 * 1580 3019 3472 * * 25 100 5820 4352 4524 64 * * 3187 1000 0 L 26 * * * * * * * * * 258 * * * * 3320 * * 3979 * * 26 712 1696 3625 3817 106 * 0 3074 2448 1000 L 27 * * * 3277 * 3528 * * * 335 * 5857 * * * * * * * * 27 0 * * * * * 0 2935 0 1497 S 28 1450 * * * * * * * 5161 * * * * * * 1625 1827 * * * 28 25 5857 * 0 * * 0 2935 1000 1497 H 29 * * * * * 1002 5810 3897 * 3908 * * * * * 3221 * 2047 * * 29 706 1448 5605 4524 64 1000 1000 3155 2341 1497 W 30 * * * * * 3976 * * * 3191 * * * * * 3764 * * 621 3276 30 135 3484 * 3000 193 0 * 3201 1000 1564 G 31 * * * * * 89 * * * * * * * * * 4057 * * * * 31 0 * * * * * * 3325 0 0 I 32 6145 * * * * * 4041 731 * * * * * * * 4057 4340 2229 * * 32 0 * * * * * * 3325 0 0 K 33 * * * * * * * * 371 * * * * * 2141 * * * * * 33 0 * * * * * * 3325 0 0 Q 34 * * * * * * * 3168 * * * 1776 * 894 * * 4090 * * * 34 89 * 4057 * * * * 3325 0 0 L 35 3943 * * * * * * * * 97 * * * * * * * * * * 35 0 * * * * * 0 3212 0 1000 Q 36 * * * 3128 * * 3749 * * * * 3193 3943 799 4014 * * * * * 36 0 * * * * * 0 3212 0 1000 A 37 414 * * * * 3943 * * * * * * * * * * 2740 4838 * * 37 0 * * * * 0 * 3212 0 1000 R 38 * * * 4063 * * * * 3777 * * * * * 206 * * * * * 38 0 * * * * * * 3329 0 0 V 39 * * * * * * * 5448 * 2055 4973 * * * * 3152 * 756 * * 39 0 * * * * * * 3387 0 0 L 40 2788 * * * * * * * * 930 * * * 5409 * 3418 2229 * * * 40 0 * * * * * * 3387 0 0 A 41 519 * * * * 2941 * * * * * * * * 3196 5626 4547 * * * 41 18 * 6357 * * * * 3400 0 0 V 42 * 4084 * * * * * 2150 * 1300 4103 * * * * 5483 * 2359 * 4874 42 0 * * * * * 0 3389 0 1000 E 43 * * * 301 * 3396 * * 4773 * * * * * 4872 * * * 5479 * 43 0 * * * * * 0 3389 0 1000 H 44 4311 * * 5888 * 3782 6350 * 1294 * * 5647 * * 1806 6730 3894 4124 * * 44 32 5507 * 0 * * 0 3383 1000 1000 Y 45 * * * * 4900 * * 2961 * 3426 4124 6570 * * * * 4061 * * 696 45 0 * * * * * 0 3383 0 1000 L 46 * * * * * * * 3764 * 705 4124 * 2961 * * 5507 * 3894 * 4720 46 0 * * * * * 0 3383 0 1000 R 47 5566 * 3215 3183 * 4720 * * 978 * * * * 3687 2858 * * * * * 47 0 * * * * * 0 3383 0 1000 D 48 * * 737 4899 * 2961 6231 4720 * * * 3660 * * 3215 * * * * * 48 0 * * * * * 0 3383 0 1000 Q 49 * * * * * * * * * * 3215 4720 * 462 * 2961 * * * * 49 0 * * * * * 0 3383 0 1000 Q 50 2205 * * 6247 * * * * * 5694 3215 * 4777 1388 * 3719 2961 5654 * * 50 0 * * * * * 0 3383 0 1000 L 51 2961 * * * 6700 * * 4142 3585 914 * * * 4546 4057 4720 * 4311 * * 51 0 * * * * * 0 3383 0 1000 L 52 * * * * * * * * * 512 5343 * 2961 * * 4720 * * * 3215 52 0 * * * * * 0 3383 0 1000 G 53 4310 * * * * 1917 4311 * 4180 * * 2476 * 4124 2374 3168 * 4720 * * 53 0 * * * * * 0 3383 0 1000 I 54 6118 * 3345 2744 4720 * * 2016 * 3014 6771 3069 * 3734 * 3262 5566 * * * 54 0 * * * * * 0 3383 0 1000 W 55 * * * * 5566 4720 * 4899 * 2039 * * * * * 4777 * 4124 834 6771 55 0 * * * * 0 * 3383 0 1000 G 56 * * 3228 * * 163 * * * * * * * * * * * * * * 56 0 * * * * * * 3563 0 0 C 57 * 350 * * 6055 6592 * * * 2395 * * * * * * * * * * 57 163 3228 * 0 * * * 3563 1246 0 S 58 2046 * * 4164 * * 3228 * 4634 2395 * * * 5885 * 1523 * * * * 58 0 * * * * * * 3563 0 0 G 59 * 4554 5900 * 3322 1617 * * * 4714 * 3908 * * * * * * 1733 3198 59 14 * 6651 * * * * 3650 0 0 K 60 5544 * * * * * 4014 * 682 * 4386 4932 * 4240 3228 6337 4621 * * * 60 109 3776 * 0 * * 0 3866 1603 1000 L 61 5939 * * * * * 2870 6437 * 2286 * * * 1423 * 3964 2510 5808 * * 61 0 * * * * * 0 3866 0 1000 I 62 * * * * * * 2759 1418 * 4828 * * * * * 3428 * 2021 * 3270 62 0 * * * * * 0 3910 0 1000 C 63 3745 430 * * * * 4828 * * 2759 * * * * * * * * * * 63 0 * * * * * 0 3910 0 1000 C 64 * 6370 * * * * 930 * * * * * 3775 * 5259 * 2433 3296 * 3704 64 0 * * * * * 0 4025 0 1000 T 65 * 4731 * * * * 2840 * * 4010 * * * * * 4588 476 * * * 65 0 * * * * * 0 4082 0 1000 N 66 3961 2495 6919 * * * * 5227 * 4587 5611 2651 * * 5816 1963 2308 * 5264 * 66 156 * 3284 * * * 0 4082 0 1000 V 67 4649 2034 * * * * * * * * * * * * * * * 482 * * 67 63 5503 5612 0 * * 0 3658 1000 1502 P 68 4247 * * 3577 * * * * 4396 3202 * * 712 * * * 3367 * * * 68 76 * 4276 * * * 0 3658 0 1957 W 69 * * * * * 2230 * * * 3966 * * * * * * * 4687 548 * 69 24 * 5919 * * * 0 3716 0 2370 N 70 * * * 3663 * 3952 * 5690 5725 * * 1028 * 4358 * 4356 2119 * * * 70 45 * 5038 * * * 0 3707 0 2336 S 71 5000 * 4080 4375 5754 * * 4932 4511 2331 * 3291 * 4785 5143 2316 4438 3624 * 3781 71 103 * 3864 * * 1471 645 3831 0 2418 S 72 3450 * * 5246 * * * * * * * * * 4529 * 1589 1948 2548 * 3715 72 137 * 3468 * * 1404 685 4089 0 2119 W 73 * 4921 * * * 3077 * * * * * * * 5368 3299 4612 * * 553 * 73 168 3932 4487 0 * 1160 856 3853 1615 2353 S 74 3732 * * 4714 * 2013 * 3557 * * * 5897 5775 * * 1319 4020 4147 * * 74 47 * 4954 * * 2539 272 4112 0 2186 N 75 * * 4905 3470 * 4352 * * * 4191 * 722 4885 * * 5767 * 3132 * * 75 345 3132 3346 2309 325 * 0 4066 1745 2211 R 76 4684 * 4251 * * * 5613 2564 2302 * * 3790 * 3464 2120 5263 4029 4796 * * 76 81 4898 5585 0 * 751 1302 4142 1000 2511 N 77 4939 4901 4446 * * * 5300 * 4640 3792 * 2411 5485 * * 1399 3068 5331 * 5907 77 0 * * * * 2092 386 4365 0 2122 L 78 5467 * 5484 4942 6339 * * 3393 3696 1934 5127 3327 4914 2542 * * 4149 * * 3530 78 0 * * * * 831 1191 4384 0 1885 S 79 * * 2201 3274 * 3928 * * 4001 * * 4492 5377 3320 4667 3811 2203 * * 4196 79 58 4667 * 0 * 596 1563 4418 1000 1320 E 80 4217 4826 3472 2782 * 5394 * 5423 3729 * 4387 * 1636 6281 * 4566 6275 5050 * 3554 80 0 * * * * * 0 4450 0 1000 I 81 5309 * 2771 5495 * 5397 * 793 * 5394 * 2954 5399 5132 * * * * * * 81 35 5394 * 2585 263 * 0 4450 1000 1000 W 82 * * * * 3315 * * * * * * * * 4313 * * * * 236 * 82 183 3221 6373 1656 551 0 * 4434 1830 1000 D 83 5646 * 2030 3293 * 2658 * * 5435 * * 2008 * 3427 * * 3340 * * 6488 83 0 * * * * 0 * 4443 0 1000 N 84 * * * * * * 4124 * 4596 * * 397 * * 3341 5444 5624 * * * 84 0 * * * * * * 4435 0 0 M 85 * 4260 4403 3823 * * * 4391 * 2810 823 * * 5510 * * 4250 * * * 85 0 * * * * * * 4488 0 0 T 86 * 4519 4680 * * 4247 * * * * * * * * * * 210 * * * 86 0 * * * * * * 4488 0 0 W 87 * * * * * * * * * 3597 * * * * * * * * 201 4391 87 127 3568 * 0 * * * 4488 1412 0 L 88 * 4418 4174 * * * 5181 4703 4344 3229 2432 * * 1325 * 4233 * * * 4707 88 0 * * * * * * 4457 0 0 Q 89 3203 * * 1606 * * 5515 * 5248 * * 4707 5490 1397 * 4418 5181 * * * 89 0 * * * * * * 4457 0 0 W 90 * * * * * 2832 * 4233 * * * * * * * * * * 311 * 90 0 * * * * * * 4457 0 0 D 91 * * 1930 1239 * 4154 4301 3581 * * * 4427 * 5230 * 5470 * * * 5183 91 0 * * * * * * 4480 0 0 K 92 * * * 3181 * * * 4140 1621 5066 5432 * * 4899 1521 * 3775 * * * 92 0 * * * * * * 4638 0 0 E 93 * * 4441 1601 * * 5676 * 2308 2876 * 5295 * 3219 3165 5491 * * * * 93 0 * * * * * * 4638 0 0 I 94 * * * * * * * 1039 4140 3449 * * * * * * 3624 1817 * * 94 0 * * * * * * 4638 0 0 S 95 3293 * 2135 4568 * 4862 * 4228 5137 4140 * 3638 * 5493 3907 1806 * * * * 95 0 * * * * * * 4638 0 0 N 96 2929 * * 5364 6315 * * * * * 5137 826 * 5057 5295 4908 3587 * * 3895 96 0 * * * * * * 4638 0 0 Y 97 5614 * 5403 * 4598 * 4093 3754 * 1921 * * * 4228 * 4865 * 5676 6164 1334 97 0 * * * * * * 4638 0 0 T 98 * * 4980 2701 4692 * 5098 * * * 5215 * 6258 4062 * 3968 779 * * * 98 87 * 4091 * * * * 4299 0 0 Q 99 3821 * 2602 * * 1597 * * * * * 4009 * 2240 * 3400 3935 * * * 99 0 * * * * 0 * 4079 0 1000 I 100 * * 5098 3953 * * 3708 3321 6176 3917 * 1719 * 5536 * * 2022 3676 * * 100 0 * * * * * * 4299 0 0 I 101 * * * * * * * 334 * 5293 * * * 4006 * * * 4692 5520 4091 101 0 * * * * * * 4299 0 0 Y 102 * * 4321 4476 5051 * 5527 * * * * * * 5064 * 2291 2460 * * 1194 102 93 4006 * 0 * * * 4299 1000 0 G 103 4189 * 2696 3616 * 2617 * 4817 2799 5293 * 3550 * 4448 5927 3165 5516 4042 * * 103 0 * * * * * * 4299 0 0 L 104 3534 4091 5433 4757 * * * 5536 * 870 4178 * * 6102 4956 4741 5350 * 4006 * 104 0 * * * * * * 4299 0 0 L 105 * * * * * * * 2182 * 359 * * * * * * * * * * 105 0 * * * * * * 4299 0 0 E 106 5350 * * 1091 * 6567 * * 2647 * * 4739 * 2752 4528 * 4956 3750 * * 106 0 * * * * * * 4299 0 0 E 107 4488 * 3069 1405 * 4009 * 4255 3554 5618 * 3859 * 3005 5566 * * 5365 * * 107 0 * * * * * * 4332 0 0 S 108 915 * * * * * * 4009 * * * * * * 3406 1674 * * * * 108 0 * * * * * * 4332 0 0 Q 109 3004 * * * * * 3228 * 3502 * * * * 968 4297 * * * * 3080 109 0 * * * * * * 4291 0 0 N 110 3471 * 3227 2966 * * * 3086 * 5479 * 2167 6044 5023 4264 6152 2836 4056 * * 110 0 * * * * * * 4212 0 0 Q 111 * * * 4973 * * 4843 4932 * 5338 * * 4113 722 5196 3098 3884 * * * 111 0 * * * * * * 4243 0 0 Q 112 4071 * * 2489 * * 5171 * * * * * * 787 3080 * 4764 * * * 112 0 * * * * * * 4218 0 0 E 113 * * 4553 901 * 4071 * * 4042 4515 * 3758 * 2442 * * * * * * 113 0 * * * * * * 4218 0 0 K 114 * * * 3480 * * * * 1457 4764 * 2665 * 4401 1983 4838 5935 * * * 114 0 * * * * * * 4218 0 0 N 115 4671 * * * * * * * 3974 4006 3985 445 * * * * 4753 * * * 115 0 * * * * * * 4392 0 0 E 116 * * * 1412 * * * * 3218 3773 3894 4269 * 2849 * * 4697 2764 * * 116 0 * * * * * * 4392 0 0 Q 117 * * 4125 * 4175 * 2650 * 1834 * * 4511 * 2522 2953 * * * * 3315 117 0 * * * * * * 4392 0 0 D 118 3582 * 1548 1628 * * * * 2662 * * * * 4701 * * 4199 * * * 118 0 * * * * * * 4196 0 0 L 119 * * * * 4512 * * * * 411 * * * * * * * 3457 * 3143 119 0 * * * * * * 4196 0 0 L 120 5246 * * 5196 * * * * 4512 1190 * * * 1457 * * 5420 * 4199 5498 120 0 * * * * * * 4196 0 0 A 121 2021 * * 2309 * * 4170 * 1861 * * * * 4121 3509 3727 * * * * 121 0 * * * * * * 4149 0 0 L 122 * * * * * * * 4156 * 83 * * * * * * * * * * 122 0 * * * * * * 4088 0 0 D 123 * * 330 * * * * * * * * 2291 * * * * * * * * 123 0 * * 0 * * * 3102 0 0 //