HHsearch 1.5 NAME c9mllR_ FAM FILE c9mllR_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9mllR_.a3m DATE Sat Nov 1 13:18:23 2025 LENG 91 match states, 91 columns in multiple alignment FILT 55 out of 57 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.3672 -2.5843 SEQ >ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 9850888999999996678772799999999999999999999999999870766777899999999975799999999999999984229 >Consensus rxxsyxxYixkvLKqVxpdxxiSxkamximnSfvxDiferIAxEAsxlaxxxkrxTitxreIqtAvxllLPgeLakxAvxegtkAvxxxxs >c9mllR_ RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS >UniRef50_A4I7E8(177-267:278) Histone H2B n=9 Tax=Trypanosomatidae RepID=A4I7E8_LEIIN E=1e-17 s/c=1.00 id=47% cov=101% RSQHWDLYIHRALRRFFKRGTLSKAAVRVLSSFIEDMFNRIQTEAVFVAKINKVKTLTAREIQTSARLLLPPELAKHAMSEGTKAVAKYNA >UniRef50_Q28GH7(28-90:98) Novel protein n=3 Tax=Xenopus (Silurana) tropicalis RepID=Q28GH7_XENTR E=6e-06 s/c=0.83 id=47% cov=70% -KGRYSSFIYRVLKQ---NQRKSSFASLSKESTGKETCLCIADEAARLSLYNKRKTITCQEIQSAVK------------------------ >UniRef50_UPI0000EBE7A7(79-166:168) PREDICTED: similar to H2B histone family, member W, testis-specific n=6 Tax=Bos taurus RepID=UPI0000EBE7A7 E=3e-26 s/c=1.35 id=48% cov=97% ----FATYFPRVLRQIHKGMSLSRDSVNILDSFVKDMFERIAEEAGRLARNNKRRTITHEDIEAAVRLLLPGDLCKYAINVATKSLIGYHT >UniRef50_B0DVY0(43-112:114) Predicted protein (Fragment) n=3 Tax=Laccaria bicolor S238N-H82 RepID=B0DVY0_LACBS E=1e-13 s/c=1.10 id=46% cov=78% -EESYSSYIY---KGVHPDTGISKKAMAILKSFVNNIFKHIATEPSSTCHVGLRLSHSVFMLITSINFVLQDQI----------------- >UniRef50_C4V8I2(39-124:137) Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V8I2_NOSCE E=3e-13 s/c=0.88 id=29% cov=86% ----FKSAIKKIAKDINPDQTvfLTSQAIAILCAIAYDIVSTCGEVASEFSKKVSKQTVGADEIVAAFEILLKGELKKLALRE---------- >UniRef50_Q54BC2(17-102:226) Histone H2B.v1 n=1 Tax=Dictyostelium discoideum RepID=H2BV1_DICDI E=2e-18 s/c=1.09 id=39% cov=96% -----GIYIKKLIKQINPACRIQVKSVQILTSLIRDTTISIMNEAFHLVQLSNKRTLSARDVQTSVRLCTVGEISRHAVSEGVKRVTNFNS >UniRef50_B7XI58(40-128:133) tRNA and rRNA cytosine-C5-methylase n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XI58_ENTBH E=6e-12 s/c=0.81 id=27% cov=97% ----FKSAIKKCLKESVPDgtVTITRNSLAVLCGIAQSILEDASVLSAELAQKVNKKTIGGEEVITAFELMLTGELKKLCVREIKNTLSKMNT >UniRef50_Q7KWR7(2-80:474) Histone H2B.v2 n=1 Tax=Dictyostelium discoideum RepID=H2BV2_DICDI E=6e-11 s/c=0.87 id=26% cov=88% --ESYSPSIQKLCVFLKPESDISNTGISYLNNFLADMSNAIIVESIHSSKSHKHKTILIEDIESALNVVFPSEIADSIINQ---------- >UniRef50_Q2HW83(21-101:109) Histone H2B; Histone-fold n=1 Tax=Medicago truncatula RepID=Q2HW83_MEDTR E=1e-12 s/c=0.92 id=30% cov=90% ----WQLELTNIRKQVCPDLKLQLGGMKMMDSMVNYFMKKLIAEA---TKHVDSNCLDVREIMAAVYQVFPEQLAKNAHQRGLEAVNQ--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * * * * * * 2291 * * * * * 330 * * * * * 1 0 * * * * * * 2777 0 0 K 2 * * * 3309 * 2527 2794 * 1255 * * * * * 4782 2987 * * * * 2 0 * * * * * * 3606 0 0 E 3 * * 2823 1230 * 2685 * 4926 5997 * * 4327 * 4310 3329 * 5133 * * * 3 0 * * * * * * 3790 0 0 S 4 * * 4512 5322 * 3870 3781 * * * * 3615 * * 4246 955 2836 * * * 4 0 * * * * * * 3799 0 0 Y 5 * * * * 1521 * * * * 5546 * * * * * * * * 2958 996 5 26 * 5810 * * * * 4346 0 0 S 6 2583 * 4835 * 5115 3512 * * 2638 * * 3781 * 4392 3283 1820 6104 * * * 6 0 * * * * * 0 4400 0 1000 I 7 5840 * * * * * 5951 2616 * 2443 6627 4316 3958 * 4151 2162 3225 3210 * * 7 0 * * * * * 0 4400 0 1000 Y 8 3159 * * 4392 4208 * * * * 5951 * * * * * 4327 * * * 473 8 0 * * * * * 0 4400 0 1000 V 9 * * * * 3351 * * 891 * 3487 5565 * * * 5622 4845 5481 2516 * * 9 0 * * * * 0 * 4444 0 1000 Y 10 * * * * 4726 * 3805 5770 2594 5979 * 3872 3247 4406 5224 4538 4029 * 5234 1679 10 57 * 4691 * * * * 4331 0 0 K 11 5530 * * * * * * * 991 * * 4458 * 5927 1342 * * * * 5724 11 18 * 6318 * * * 0 4382 0 1000 V 12 4865 4796 * * * 5330 * 2226 * 2997 * * * * * 3992 5714 1047 * * 12 0 * * * * * 0 4384 0 1428 L 13 4676 4346 * * * * * 3341 * 509 6110 * * 6005 4453 4851 * * * * 13 0 * * * * 980 1021 4384 0 1428 K 14 * * * * * * * * 326 * * * * * 3194 5740 5216 4406 * * 14 24 5901 * 2585 263 * 0 4448 1000 1000 Q 15 5476 * 4198 2650 4406 4729 * * 6008 4152 * 5994 * 951 4903 4623 * * * * 15 75 * 4294 * * 0 * 4448 0 1000 V 16 5640 * * * 4945 * * 1859 * 4367 6175 * * * * 4797 * 802 * * 16 0 * * * * * 0 4266 0 1302 H 17 * 4439 5144 4953 4189 * 1071 5297 4367 * * 3072 * * 5165 4882 5869 4026 * 5080 17 0 * * * * * 0 4266 0 1302 P 18 * * * 4592 * * 5080 * 4103 5546 * 5678 529 5078 * 5412 4256 4986 * * 18 0 * * * * 862 1152 4266 0 1302 D 19 5033 * 1070 2853 5021 2816 4563 * * * * 3654 6060 * 4909 6396 * * * * 19 51 4842 * 1000 1000 * 0 4433 1000 1000 T 20 * 5033 * * 5875 4909 * 3844 5199 2122 3871 4896 * 3430 5353 4396 1890 4156 * * 20 22 6060 * 3585 126 * 0 4433 1000 1000 G 21 * * 4396 * * 1253 * 5021 4502 * * 4896 * * 3412 2456 2755 * * * 21 56 4725 * 1000 1000 * 0 4433 1000 1000 I 22 6189 * * * 5563 * * 822 4948 1744 4563 * * * * * * 5257 * * 22 49 4896 * 1000 1000 0 * 4433 1000 1000 S 23 * * * * * * * * * * * * * 3649 * 453 2400 * * * 23 0 * * * * * * 4331 0 0 S 24 5467 * * 5198 * 3539 6201 * 2917 3919 * 3927 6033 3926 3774 1478 6083 4838 * 5419 24 0 * * * * * * 4331 0 0 K 25 4975 * 4679 5141 5130 4482 6256 * 1230 * 5657 3900 5548 3097 3451 * 4406 * * 5361 25 0 * * * * * * 4331 0 0 A 26 1093 * * 5435 * 3178 * * * 5198 * * * * * 1946 3286 6896 * * 26 0 * * * * * * 4331 0 0 M 27 * * * * * * * 2572 * 3473 1120 * * 5435 * 4164 4768 2590 * * 27 0 * * * * * * 4331 0 0 G 28 3197 * 3942 3936 * 3570 5110 6708 3569 4122 5220 3716 * 3710 3969 2319 4847 5824 * * 28 0 * * * * * * 4443 0 0 I 29 * * * * 6023 * 5110 1052 * * 4531 6626 * * * 4096 * 1670 * 4410 29 0 * * * * * * 4443 0 0 M 30 * * * * * * 5663 6788 5025 1523 1182 * * * * * 5022 3613 * 4677 30 0 * * * * * * 4443 0 0 N 31 * 3247 2138 5025 * * * 4360 4756 * * 1069 * * * 4477 5084 * * * 31 0 * * * * * * 4443 0 0 S 32 4743 * * * * 3666 * 5393 * * 4635 3766 5115 * * 592 4208 * * * 32 29 * 5672 * * * * 4443 0 0 F 33 * * * * 869 * * 3242 * 2566 3021 * * * * * 4966 * * 5453 33 0 * * * * * 0 4431 0 1000 V 34 3816 * * * * 4963 * 2252 5012 3573 3179 * * * * 4908 * 1223 * * 34 0 * * * * 0 * 4502 0 1000 N 35 3764 * * 4970 * 6215 4529 * 2960 * * 1218 * 4253 3838 4502 * 5228 * 3535 35 0 * * * * * * 4514 0 0 D 36 * * 504 4063 * 5142 5228 * * * * 4124 * * * 4225 * * * 3853 36 0 * * * * * * 4514 0 0 I 37 * * * * 3734 * * 1143 * 3688 2317 5228 * 5717 * * 3326 4363 * * 37 0 * * * * * * 4514 0 0 F 38 * 5118 * * 688 * * * * 3161 3504 * * * * 4395 4844 3872 * * 38 0 * * * * * * 4385 0 0 E 39 * * 3335 1030 * 5167 5195 4844 3320 5118 * 3426 * 4430 * 4796 * * * 5899 39 0 * * * * * * 4385 0 0 R 40 4395 4367 4906 * * * 4738 5195 3460 * * 5226 * 5083 910 4104 3872 * * * 40 0 * * * * * * 4385 0 0 I 41 4906 4796 * * * * * 495 * 2540 * * 5899 * * * * 4953 * * 41 0 * * * * * * 4385 0 0 A 42 508 * * * * 4796 * 3239 * * 4844 * * 5025 * 4906 5899 4676 * * 42 29 * 5632 * * * * 4385 0 0 G 43 3353 5202 3032 2696 * 3951 * * 4510 * 4565 4789 * 4972 4905 3134 2843 3428 * * 43 0 * * * * * 0 4384 0 1000 E 44 * * 5023 282 * * * * 4487 3919 * * * * * * * 4789 * * 44 0 * * * * * 0 4384 0 1000 A 45 310 * * 6125 * * * * * * * * 4692 * * 3053 5651 * * * 45 67 * 4457 * * * 0 4383 0 1000 S 46 1974 5209 * * 4635 2949 * 4311 * * * 5751 * * * 1156 * 5009 * * 46 0 * * * * * 0 4215 0 1578 R 47 * * * 3219 3955 5859 3220 5128 4921 4859 * 3944 * 4074 1538 3060 5730 * * * 47 0 * * * * * 0 4215 0 1578 L 48 * * * * 4722 * * 4243 * 520 4572 * * 5209 * 4311 4555 4325 * * 48 0 * * * * 816 1212 4215 0 1578 A 49 1185 3929 * * * 5390 * * * 4549 4221 * * * * 2517 3335 3313 * * 49 0 * * * * * 0 4383 0 1000 H 50 * 4665 6203 * 5279 6229 2643 * 1704 4242 * * 8207 2606 2462 5707 * * * 5664 50 22 * 6072 * * * 0 4383 0 1000 Y 51 3989 * 6189 * * * 3633 4292 2784 3353 * 4867 * 4977 * 3754 * 4089 * 1516 51 0 * * * * * 0 4350 0 1446 N 52 4118 * * * * 4633 3480 * 3926 * * 1872 * * 5225 2708 3024 2762 * 5417 52 0 * * * * * 0 4350 0 1446 K 53 * * 4518 * * 3350 6625 * 1094 4633 * 2980 * 5417 3085 3811 * * * * 53 0 * * * * * 0 4350 0 1446 R 54 * * * * * * 3127 * 1619 * * 6065 * 5655 1204 4052 * 5019 * * 54 0 * * * * 0 * 4354 0 1446 S 55 6296 5355 * * * 5282 * * 2328 3048 * 4041 6791 3556 2888 2187 3590 5343 * * 55 0 * * * * * * 4347 0 0 T 56 * 4490 * * * 5658 * 6058 * * * * * * * 4722 180 * * * 56 0 * * * * * * 4354 0 0 I 57 * * * * * * 4672 1243 * 1238 5195 * * * 5710 * * 3878 * * 57 0 * * * * * * 4313 0 0 T 58 5195 * 4117 * * 2451 5962 5976 * 4443 * 6126 * 5407 * 2382 1236 * * * 58 0 * * * * * * 4313 0 0 S 59 2344 5145 * * 5826 4911 4864 3846 4559 6001 * * 4465 * * 1431 4764 3194 * * 59 0 * * * * * * 4313 0 0 R 60 * * 3878 3265 4672 3972 5976 * 3806 * * 5195 * 4271 902 * * * 5407 * 60 0 * * * * * * 4313 0 0 E 61 5407 * 1865 719 * * * * * * 4672 * 4788 * * * * 5710 * * 61 0 * * * * * * 4313 0 0 I 62 * * * * * * * 547 * 3135 * * * * * * * 2308 * * 62 0 * * * * * * 4313 0 0 Q 63 * * * 2724 * * * 3236 5177 * 4571 6206 * 682 * * * 4799 * * 63 0 * * * * * * 4265 0 0 T 64 2620 * 6674 5411 * 5225 7380 * * * 4707 * * 4475 * 2167 1210 4918 * * 64 0 * * * * * * 4265 0 0 A 65 314 * * 5634 * 5752 * * * * * * 7380 * * 2923 5718 * * * 65 0 * * * * * * 4265 0 0 V 66 4268 * * * 3272 * * 3686 * 4327 4691 * * * * * 5468 609 * * 66 0 * * * * * * 4211 0 0 R 67 * 5636 5291 3272 * * 3129 * 2771 * * 3528 * * 1199 * * * * 3884 67 0 * * * * * * 4211 0 0 L 68 * * * * 4203 * 5664 3543 5186 530 * * * 4491 5313 * * 4305 * * 68 0 * * * * * * 4176 0 0 L 69 * 4817 * * 5454 * 5664 4155 * 1183 4286 * * * * * 6619 1458 * * 69 0 * * * * * * 4176 0 0 L 70 * * * * 3241 * * 5385 * 295 * * * * * * 4817 5664 * * 70 0 * * * * * * 4176 0 0 P 71 5454 * * * * * * * 3439 * * * 397 4746 * * 4237 4817 * * 71 0 * * * * * * 4176 0 0 G 72 4897 * 4002 4491 * 648 4947 * 5161 * * * 4323 * 5114 3605 * * * * 72 0 * * * * * * 4176 0 0 E 73 * * 3076 588 * 5547 * * 3675 * * * * 3100 * * * * * * 73 0 * * * * * * 4156 0 0 L 74 * * * * * * * 2429 * 361 4796 * * * * * * * * * 74 0 * * * * * * 4107 0 0 A 75 933 4131 * * * 2810 * * 3628 4892 * 5208 * 4598 4755 4145 * * * * 75 0 * * * * * * 4040 0 0 K 76 * * 4316 4892 * * * * 508 * * 5953 * 5538 2982 * 5072 * 5735 * 76 0 * * * * * * 4040 0 0 H 77 * * * * * * 987 * * 2249 * 3548 * * 4649 4316 * * * 3189 77 0 * * * * * * 4040 0 0 A 78 228 4458 * * * * * 3712 * * * * * * * * * 5352 * * 78 0 * * * * * * 4040 0 0 V 79 5735 * 4892 4772 * * 4360 2368 * 4820 3520 * * * 5260 * 5109 1026 * * 79 0 * * * * * * 4040 0 0 S 80 2213 * 5260 * * * * * * 4333 * 3549 * 4360 2722 1347 5072 * * * 80 0 * * * * * * 4040 0 0 E 81 * * 4477 705 4096 * 5109 * 4087 * * * * 3225 3814 * * 5858 * * 81 0 * * * * * * 4040 0 0 G 82 3212 * * * * 338 * 4235 * * * * * * * * * 4384 * * 82 0 * * * * * * 3821 0 0 T 83 * * 3883 * * * 4384 * 4235 3745 5466 4970 * 5077 * 3004 993 4463 * * 83 0 * * * * * * 3821 0 0 K 84 * * * 3650 * * * * 755 * 4503 2841 * 5384 3876 5077 5466 * * * 84 0 * * * * * * 3821 0 0 A 85 225 * * * * * * * * * * * * * 4463 4441 4235 * * * 85 0 * * * * * * 3821 0 0 V 86 4697 * * * 4410 * * 3918 * 2274 4503 * * * * * * 743 * * 86 30 * 5597 * * * * 3821 0 0 T 87 3962 * * 4909 * * 3836 3547 5058 4670 6211 3690 * * * 1824 1947 4476 * * 87 0 * * * * 0 * 3809 0 1000 K 88 * * * * * 5745 5533 * 1221 * 5384 2585 5372 4221 2427 * 4312 * 5263 * 88 0 * * * * * * 3821 0 0 Y 89 5303 * * * 1449 * * * * * 3556 * * * * * * * * 934 89 0 * * * * * * 3390 0 0 T 90 * * * 4295 * * 5224 3359 3151 5483 4080 2019 * * 5162 4647 1661 * * * 90 0 * * * * * * 3385 0 0 S 91 3317 * * * * * * * * * * * * * * 638 1960 * * * 91 0 * * 0 * * * 3196 0 0 //