HHsearch 1.5 NAME c9m7yE_ FAM FILE c9m7yE_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9m7yE_.a3m DATE Sat Sep 6 10:14:38 2025 LENG 72 match states, 72 columns in multiple alignment FILT 104 out of 165 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.9 EVD 0.4303 0.3082 SEQ >ss_pred CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHCCHHHHHHCC >ss_conf 958889997214878899999999999996335256767565866669999998189588770334553169 >Consensus arxtvedxlxxvxsryxLVxxaakRArqlxxgxxxxxxxxxxxKpxxiALxEIaxgkvxxexlxxxxxxexx >c9m7yE_ ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQ >UniRef50_B0P3M1(12-71:71) Putative uncharacterized protein n=4 Tax=Clostridiales RepID=B0P3M1_9CLOT E=0.0002 s/c=0.79 id=30% cov=85% ---------KVISSRYSIVLASAKRARQIIAGDMPLVEEKDGAKPLSTAVEELWEEKV--KILGDDEEAEE- >UniRef50_B2GD58(5-94:94) DNA-directed RNA polymerase subunit omega n=4 Tax=Lactobacillus RepID=RPOZ_LACF3 E=4e-09 s/c=0.70 id=28% cov=94% ---SVDKLLERVDSRYSLIMLASKRAHEIDkyridkwraahpdkagetvslEGDKPLLLDhYDSNKSVGMALEEIEAGLVTIDPDQHEDLQD-- >UniRef50_A4XL85(4-75:76) DNA-directed RNA polymerase, omega subunit n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XL85_CALS8 E=6e-12 s/c=1.00 id=24% cov=100% -RPGLDELLQYVDNKYTLSVLVAKRARQLLEQMQKKVdINLESDKYVTMAVNEIASGKISYKYIKPVKKNESK >UniRef50_C7M0V2(13-92:94) DNA-directed RNA polymerase, omega subunit n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0V2_ACIFD E=3e-09 s/c=0.78 id=33% cov=96% ----IEELLEHTGSKFVLITLAARRARQINDYrthlgeglgaMIPPQVESDVAKPLSLAFEEIAAGMIVPDVVaeDVTELVEDE >UniRef50_Q5GSP9(2-66:142) DNA-directed RNA polymerase subunit omega n=6 Tax=Wolbachia RepID=RPOZ_WOLTR E=8e-09 s/c=0.95 id=30% cov=89% AESVIEKCTEQVSNRFKLALLASQRTHDLNTGASNPVQSarFKGHKNTIISLYEIAERQVDTHEL--------- >UniRef50_B4DCN8(6-69:73) DNA-directed RNA polymerase, omega subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCN8_9BACT E=7e-08 s/c=0.91 id=25% cov=89% -----EEAFKVIPSQQLLVNVVSKRVRQLTAGHRPMVETGPRMGFSDIALKEIIEGKLKFEAATAESE---- >UniRef50_B1C5R9(9-71:89) Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C5R9_9FIRM E=2e-08 s/c=0.95 id=27% cov=83% --------LEKVDNKYVLAMLVAKRSRELFDGD-EPMVDEYFVNLITTAVEEVYEDRIGYYLIEEGDR---- >UniRef50_Q17Y32(10-74:74) DNA-directed RNA polymerase subunit omega n=15 Tax=Helicobacter RepID=RPOZ_HELAH E=8e-08 s/c=0.89 id=34% cov=89% ----VAQALKNIGNdRYMLDNLVFARVKQLNAGAKTLVnMDPKRHKLVDIAIREIAEGKIDIDRIDERN----- >UniRef50_C0ZG01(4-68:68) DNA-directed RNA polymerase subunit omega n=3 Tax=Paenibacillaceae RepID=RPOZ_BREBN E=2e-08 s/c=0.93 id=28% cov=90% ---SIDELTEKAESKYILVTVASKRARQLRENSEVQVVRPKSKKFVGLALEEFISDELVHEFLDGRK----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 3441 0 0 R 2 * * * 4112 * * 4068 * * * * * * * 180 * * * * * 2 0 * * * * * * 3756 0 0 V 3 * 4068 * * * * * 2127 * 4739 * * 2390 * * 4112 * 1233 * * 3 0 * * * * * * 3756 0 0 T 4 * * * * * 4004 * * * 4490 * * * * * 2399 598 4548 * * 4 0 * * * * * * 4052 0 0 V 5 4120 * * * * * * 1949 * 3696 * * * * * * * 722 * * 5 0 * * * * * * 4356 0 0 Q 6 5161 * 1686 704 * * * * * * * * 5056 5859 * * * * * * 6 0 * * * * * * 4456 0 0 D 7 * * 633 2545 * * * * 4624 * * 3961 * 3658 * * * * * * 7 0 * * * * * * 4612 0 0 A 8 1891 1452 5449 * * * * * * 1825 4861 * * * * * 5312 * * * 8 0 * * * * * * 4660 0 0 V 9 * * * * 5841 * * 4020 * 705 3271 5025 6087 5521 * 5370 4450 3908 * * 9 0 * * * * * * 4990 0 0 E 10 5282 * 2647 1758 * 6469 * * 1869 6240 6139 5696 * 4593 6850 3583 4424 7138 * * 10 0 * * * * * * 5018 0 0 K 11 * * * 5412 * 5319 4003 4150 1481 4948 * 4866 * 3160 3304 6259 6907 2778 * 5185 11 28 5679 * 0 * * * 5056 1372 0 I 12 3994 6319 * * 5670 * * 1607 5398 5214 5537 * * * * 5074 3576 1401 * 6320 12 21 6143 * 1000 1000 * * 5057 1000 0 G 13 * * 1459 3327 * 3003 * * 5572 * * 3021 2466 4813 * 5093 5524 * * * 13 11 7018 * 0 * * * 5054 1000 0 N 14 * * 3621 5618 * * * * * * * 1531 * * * 945 5510 * * 6504 14 59 4638 * 0 * * * 5054 1719 0 R 15 5742 * 6280 * * * 5690 * 1717 * * * 4782 5277 779 * * * * * 15 0 * * * * * * 5082 0 0 F 16 * * * * 1658 * * * * * * 6072 * 4914 * * 5742 * * 698 16 16 * 6520 * * * * 5082 0 0 D 17 3218 * 3667 3022 * 4643 * 3967 3753 4421 4567 6264 * * 3364 2706 3163 4866 * 6122 17 0 * * * * * 0 5078 0 1000 L 18 * * * * * * * 4169 * 192 5306 * * * * 6424 * 6304 * 5687 18 0 * * * * 0 * 5073 0 1000 V 19 3746 5027 6493 * * * * 3163 * * * * * * * 3956 4979 565 * * 19 0 * * * * * * 5078 0 0 L 20 5954 * * * * 6135 4109 2201 * 2278 3617 3293 * 5819 * 6452 3445 2445 * * 20 0 * * * * * * 5078 0 0 V 21 2514 * * * 4907 * * 4901 6818 1392 3723 * * * * * 6135 1964 * 5503 21 0 * * * * * * 5078 0 0 A 22 718 * * 6414 * 5507 * 5431 * * * * * * * 3701 4692 2188 * * 22 0 * * * * * * 5078 0 0 A 23 861 * * * 5367 * * 5819 5449 * * * * * * 1800 3925 4984 * * 23 0 * * * * * * 5078 0 0 R 24 5367 * * 4776 * * 6561 * 733 5722 6385 * * 3560 2387 * * 6258 * 7109 24 0 * * * * * * 5078 0 0 R 25 * * * * * * * * * 6156 * * * 5584 136 * 6001 * * 4654 25 0 * * * * * * 5078 0 0 A 26 352 * * * * * * * * * * * * * * 4792 4560 2857 * * 26 0 * * * * * * 5078 0 0 R 27 5725 * * 6186 * * 3760 * 2832 5010 * 5707 * 5819 628 6153 * 6615 * 6153 27 0 * * * * * * 5078 0 0 Q 28 7053 * 4108 2640 * * * 6818 3885 4770 6079 * * 745 6822 6136 * 6001 * 6527 28 0 * * * * * * 5078 0 0 M 29 * * * * * * 6200 1354 * 892 5156 * * * * * * 6575 * 5819 29 93 5363 4711 0 * * * 5078 1649 0 Q 30 3277 * 6247 4353 5410 6265 * 3223 6362 4986 5207 2079 * 3185 2972 4675 4702 4432 * 5484 30 58 5162 6477 2636 253 0 * 5019 1661 1945 V 31 2726 * 2545 2226 * 6968 7293 5553 5303 5783 * 3903 * 3875 5141 3161 4916 4305 * 5281 31 37 * 5309 * * 0 * 5073 0 1000 G 32 * * 5577 5906 * 650 * * 3353 6688 * 5499 * 3989 * * 5236 * * 3242 32 165 5980 3436 3322 152 618 1521 5066 1344 1933 G 33 2530 * 3669 4275 6757 3310 4417 * 4603 6260 4095 4932 4945 6910 5085 2668 4958 4642 * 3405 33 152 * 3322 * * 0 * 5005 0 3404 K 34 2113 * * 2328 * * 5179 5852 3007 5239 5547 4348 4923 3597 4328 3719 4735 5856 * 7096 34 144 4163 4683 3919 99 0 * 5038 2464 2971 D 35 4859 6799 5451 2482 5501 5803 * * 5107 5591 * 5430 1315 5061 4412 4942 3255 5746 * 7184 35 142 3897 5224 2822 220 0 * 5062 2583 1906 P 36 3927 * 4748 6744 * 5507 * 6074 3612 1766 5416 6201 1696 6494 6406 4210 5794 5626 * 6122 36 32 * 5508 * * 0 * 5060 0 2060 L 37 5980 * * 7389 6330 5525 5208 3740 7067 1892 3204 5494 * 4634 6943 6468 4543 1713 * 5212 37 87 4967 5221 308 2379 * 0 5067 1828 1400 V 38 5165 * 3902 3125 * 4620 6379 3302 4666 3637 4795 5175 4418 4816 * 4823 4217 1828 * * 38 30 5606 * 0 * 406 2028 5043 1662 2097 P 39 6070 * 2531 2581 * 5490 4447 * 3421 * 6847 3504 4145 5884 5325 2870 3494 4928 * 5057 39 70 5860 5067 770 1274 0 * 5081 1560 1000 E 40 4068 6447 6698 2798 4734 4949 6828 5086 3979 4294 7628 7224 3150 6823 3744 4279 2868 3917 4709 4263 40 20 7221 7145 0 * 973 1028 5066 1000 1552 E 41 6579 5143 2693 2790 * 4714 5529 * 2388 4672 * 4773 3683 5943 3424 4942 4493 4264 * 5708 41 81 4467 6770 844 1175 0 * 5083 2166 1613 N 42 4273 5053 5516 6818 6585 2957 5701 * 2831 * 6897 3094 * 4480 3381 2012 5027 5839 * 5268 42 62 4926 6819 483 1814 0 * 5080 1879 1000 D 43 4539 * 2116 3008 * 6852 3636 6153 3399 5253 3779 2695 7246 5940 5652 * 4774 4657 6477 5625 43 59 6153 5252 1000 1000 0 * 5080 1000 1000 K 44 * * 6264 6231 * 4965 6650 * 305 * * 4623 * * 4273 5071 * * * * 44 0 * * * * 544 1671 5066 0 2035 T 45 5048 5578 7205 3598 4826 * * * 5158 4804 * 3381 1018 * 6407 4164 5433 5995 * 3959 45 26 5802 * 1000 1000 0 * 5062 1680 1000 T 46 4368 6250 * 5790 * * 5696 3494 * 2314 6487 * 4318 * * 5332 2300 1634 * * 46 0 * * * * * * 5078 0 0 V 47 * 6135 3480 * * 3283 * 5341 5696 6414 * 4607 * 6487 * 2362 2592 1621 * * 47 20 6153 * 2322 322 * * 5078 1000 0 I 48 6639 6200 * * * * * 1304 4454 3831 3686 7139 * 4425 4055 5558 3542 2673 * * 48 15 6588 * 0 * * * 5078 1000 0 A 49 151 * * * * 5811 * * * * * * * * * 3613 * * * * 49 0 * * * * * * 5078 0 0 L 50 6731 * * * 5401 * * 3565 * 485 3776 * * 5696 * * 5090 4440 * * 50 0 * * * * * * 5078 0 0 R 51 5811 * 6584 1824 * * 4877 6153 3483 7203 6062 4662 * 4058 1495 6711 5142 * 6342 5287 51 0 * * * * * * 5078 0 0 E 52 * * * 68 * * * * * * * * * 5584 5294 * * * * * 52 0 * * * * * * 5078 0 0 I 53 * * * * 4921 * * 472 * 3314 5529 * * * * * * 3014 * * 53 0 * * * * * * 5078 0 0 E 54 1041 * 4405 4679 7220 4603 5431 3658 * 5811 5371 3701 * 5498 5636 6412 * 5096 6949 3892 54 0 * * * * * * 5078 0 0 E 55 1891 * 3461 1560 * 5375 6714 * 4461 * 6777 5468 * 4424 5465 3286 5793 * * * 55 0 * * * * * * 5078 0 0 G 56 * * 3248 4521 * 641 5498 * 3896 6153 * 4398 * * 5837 4589 * * * * 56 13 * 6788 * * * * 5078 0 0 L 57 6942 * * 5423 4985 * 5542 6449 947 2727 5428 5649 * 4872 4781 4949 4407 4958 * 6835 57 0 * * * * * 0 5068 0 1000 I 58 * * * * 5486 * * 1764 * 2222 6123 * * 6525 * * * 1247 * 5474 58 29 6671 6620 2000 415 * 0 5068 1000 1000 N 59 5639 * 2977 6523 * 3836 * * 3548 6505 5550 2869 6123 6344 4855 2801 1955 4192 * * 59 17 * 6417 * * 1024 977 5066 0 1630 N 60 4344 5162 6262 5826 3598 6771 6011 4007 6087 3760 * 6908 3818 4875 5724 5082 5784 3244 5103 1646 60 0 * * * * 0 * 4957 0 1516 Q 61 3629 * 3305 1282 * * 5652 5299 3058 * * 5699 * 3755 5183 4370 6581 4527 * 5771 61 86 6121 4518 0 * * * 4924 1000 0 I 62 5297 * 3421 4798 5030 5552 5498 3503 4066 3514 5663 4231 4060 3973 3439 3760 3889 3592 * 5461 62 30 5614 * 0 * 933 1070 4970 1000 1569 L 63 4646 * 5044 5856 5502 * * 2345 6416 997 5902 5114 * 5738 * * 4958 3568 * * 63 26 5832 * 1000 1000 0 * 5000 1000 1000 D 64 4571 * 1572 2339 5622 3969 * * 4363 * * 3579 5573 6131 3840 5960 4119 5122 * * 64 0 * * * * * * 4937 0 0 V 65 2765 * 3719 1593 * 5185 5829 5309 5263 4975 * * 3834 4153 5870 5486 3510 4764 * 5207 65 0 * * * * * * 4886 0 0 R 66 * * 3822 2181 * 3845 5799 4843 * 4694 * 4098 4291 3801 3026 4281 4092 3738 * 4089 66 0 * * * * * * 4876 0 0 E 67 * * 2558 1678 * * * * 3079 * 5093 3147 * 3471 3733 4688 5076 * * 5414 67 0 * * * * * * 4868 0 0 R 68 5208 * 5013 1404 * * * 4195 3676 2930 * * 4571 * 2866 4982 * 4115 * 4994 68 0 * * * * * * 4786 0 0 Q 69 2505 * * 2578 * * * 3524 * * 5059 3385 4897 3113 3944 4282 4847 3243 * 4729 69 0 * * * * * * 4627 0 0 E 70 3592 * 2886 870 * * * * 3871 * * 4989 4180 4564 4745 * * * * * 70 0 * * * * * * 4519 0 0 Q 71 * * 3066 2728 * 3733 * * 4241 3903 * * * 1248 * 3829 4523 * * * 71 0 * * * * * * 4173 0 0 Q 72 * * * 918 * * 3820 * 3139 * * * * 1803 * * * * * * 72 0 * * 0 * * * 3469 0 0 //