HHsearch 1.5 NAME c9lk4S_ FAM FILE c9lk4S_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9lk4S_.a3m DATE Sat Jun 21 12:59:45 2025 LENG 54 match states, 54 columns in multiple alignment FILT 13 out of 15 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.5 EVD 0.4557 1.3465 SEQ >ss_pred CCCHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >ss_conf 941011466774130046733789999999999999987632767542155479 >Consensus lVDeRlxteGtGlxlGlnxxxLgxILxgvfxliwxlyfxxxxxxxxdedsGLxL >c9lk4S_ LVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESGLSL >UniRef50_B9S4T1(79-132:132) Photosystem II reaction center W protein, chloroplast, putative n=10 Tax=Magnoliophyta RepID=B9S4T1_RICCO E=9e-20 s/c=1.81 id=82% cov=102% LVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWSFYTVYTSTLDDDEDSGLSL >UniRef50_Q9SPI9(60-115:115) Photosystem II reaction center W protein, chloroplastic n=3 Tax=Chlamydomonas reinhardtii RepID=PSBW_CHLRE E=1e-08 s/c=1.09 id=51% cov=102% LVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGdfEDADDGLKL >UniRef50_Q9AXN8(93-144:158) PSII subunit PsbW (Fragment) n=5 Tax=Physcomitrella patens RepID=Q9AXN8_PHYPA E=4e-08 s/c=1.14 id=47% cov=98% LVDERLSTEGTGLGLGISNTKLTWILVGVTALIWTLYLLTPRRCQRVTDDSV-- >UniRef50_Q7XYI4(91-146:147) Photosystem II protein PsbW n=2 Tax=Chlorarachniophyceae RepID=Q7XYI4_BIGNA E=5e-08 s/c=1.05 id=38% cov=102% LVDSRLNGDGAGIPLGLNDSRLFFILAGVFTTVWGVYATSVKGIsdNDDEDSGMGL >UniRef50_Q9AXP0(54-109:109) PSII subunit PsbW (Fragment) n=1 Tax=Physcomitrella patens RepID=Q9AXP0_PHYPA E=3e-07 s/c=1.00 id=53% cov=102% LVDERLSTEGTGLGLGISNTKLTWILVGVTALIWALYFFVLLDVGQrvTMTSGLDL >UniRef50_C1FIQ5(60-118:118) Photosystem II 13kD protein, chloroplast n=2 Tax=Micromonas RepID=C1FIQ5_9CHLO E=3e-06 s/c=0.90 id=40% cov=102% VVDERLNGDGTGLILGINDEILGFILLTIPALVFSQFFYAQKDdgiaaGGENDDSGLSL >UniRef50_Q01EE1(97-156:156) Photosystem II 13kD Protein, chloroplast (Putative) (IC) n=1 Tax=Ostreococcus tauri RepID=Q01EE1_OSTTA E=4e-06 s/c=0.87 id=38% cov=102% IVDDRLNGDGTGLPLGINDGALGIILASVPLAIFSLYFIagkqdaGIENGGKNDDSGLSL >UniRef50_C0PQQ7(96-149:149) Putative uncharacterized protein n=3 Tax=Picea sitchensis RepID=C0PQQ7_PICSI E=9e-14 s/c=1.44 id=69% cov=102% LVDERLSTEGTGLGLGLSNPLLGWILVGVFTLIWILYFTTYSNVKEDEDSGLSL >UniRef50_A2SY30(75-128:128) Photosystem II reaction center W protein n=1 Tax=Mesostigma viride RepID=A2SY30_MESVI E=3e-13 s/c=1.41 id=38% cov=102% IIEDAMYTEGAGIALGLNSGALGFVMLGAFTLVWSLYSSYTRSLDSSEDGGLDL # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * 1836 * 660 * * * * * * * 3523 * * 1 0 * * * * * * 2513 0 0 V 2 * * * * * * * 2868 * * * * * * * * * 212 * * 2 0 * * * * * * 2513 0 0 D 3 * * 212 2868 * * * * * * * * * * * * * * * * 3 0 * * * * * * 2513 0 0 E 4 * * 1836 697 * * * * * * * * * * * 3275 * * * * 4 0 * * * * * * 2513 0 0 R 5 2868 * * * * * * * * * * * * * 212 * * * * * 5 0 * * * * * * 2513 0 0 M 6 * * * * * * * * * 584 1588 * * * * * * * * * 6 0 * * * * * * 2513 0 0 S 7 * * * * * * * * * * * 1225 * * * 1200 * * * 2868 7 0 * * * * * * 2513 0 0 T 8 * * * * * 1225 * * * * * * * * * * 805 * * * 8 0 * * * * * * 2513 0 0 E 9 * * 1225 805 * * * * * * * * * * * * * * * * 9 0 * * * * * * 2513 0 0 G 10 * * * * * 0 * * * * * * * * * * * * * * 10 0 * * * * * * 2513 0 0 T 11 2057 * * * * * * * * * * * * * * * 396 * * * 11 0 * * * * * * 2513 0 0 G 12 * * * * * 0 * * * * * * * * * * * * * * 12 0 * * * * * * 2513 0 0 L 13 * * * * * * * 2057 * 588 * * * * 3406 * * * * * 13 0 * * * * * * 2513 0 0 P 14 2868 * * * * 2128 * 3523 * * * * 870 * * * * * * * 14 0 * * * * * * 2513 0 0 F 15 * * * * 1732 * * * * 516 * * * * * * * * * * 15 0 * * * * * * 2513 0 0 G 16 * * * * * 0 * * * * * * * * * * * * * * 16 0 * * * * * * 2513 0 0 L 17 * * * * * * * 1314 * 990 * * * * * * * 3406 * * 17 0 * * * * * * 2513 0 0 S 18 * * * * * * * * * * * 825 * * * 1200 * * * * 18 0 * * * * * * 2513 0 0 N 19 * * 1225 * * * * * * * * 1200 * * * 2868 * * * * 19 0 * * * * * * 2513 0 0 N 20 * * * 3523 * 1836 * * * * * 2275 2727 * * 3275 2539 * * * 20 0 * * * * * * 2513 0 0 L 21 1836 * * * * * * 3523 2539 1925 * * * * 3275 * * 3406 * * 21 0 * * * * * * 2513 0 0 L 22 * * * * * * * * * 0 * * * * * * * * * * 22 0 * * * * * * 2513 0 0 G 23 * * * * 3275 465 * * * * * * * * * * 2539 * * * 23 0 * * * * * * 2513 0 0 W 24 * * * * 1612 * * 2805 * * * * * * * * * * 917 * 24 0 * * * * * * 2513 0 0 I 25 * * * * * * * 379 * * * * * * * * * 2112 * * 25 0 * * * * * * 2513 0 0 L 26 * * * * * * * * * 212 2868 * * * * * * * * * 26 0 * * * * * * 2513 0 0 F 27 2021 * * * 2700 * * * * 1431 * * * * * * * 2128 * * 27 0 * * * * * * 2513 0 0 G 28 * * * * * 479 * * * * * * * * * 3763 2677 4254 * * 28 0 * * * * * * 2513 0 0 V 29 2868 * * * * * * 3523 * * * * * * * * * 366 * * 29 0 * * * * * * 2513 0 0 F 30 * * * * 742 * * * * * * * 2120 * * * 2539 * * * 30 0 * * * * * * 2513 0 0 G 31 1949 * * * * 1732 * * * 2805 * * * * * * 1752 * * * 31 0 * * * * * * 2513 0 0 L 32 2805 * * * * * * * * 601 * * * * * * 2339 * * * 32 0 * * * * * * 2513 0 0 I 33 * * * * * * * 790 * * 3406 * * * * * * 1612 * * 33 0 * * * * * * 2513 0 0 W 34 * * * * 2120 * * * * * * * * * * * * * 377 * 34 0 * * * * * * 2513 0 0 T 35 2163 * * * * 2533 * 4140 * * * * * * * 1513 2344 * * * 35 0 * * * * * * 2513 0 0 F 36 * * * * 2671 * * 3406 * 841 * * * 3523 * * * 3275 * * 36 0 * * * * * * 2513 0 0 F 37 * * * * 2848 * * * * * * * * * * * * * 3406 383 37 0 * * * * * * 2513 0 0 F 38 3275 * * * 703 * * * * 3432 * * * * * 2868 4246 * * * 38 0 * * * * * * 2513 0 0 V 39 * * * * 3654 * * 1787 * 3432 * * * * * 2868 2644 2697 * 3523 39 110 3763 * 2585 263 * * 2513 1000 0 Y 40 2677 * * * * 2574 * * * * * * * * * 3275 2743 3654 * 1541 40 0 * * * * * * 2513 0 0 T 41 3294 * * * * 3848 * 3763 * 3654 * * 3432 2463 * * 2049 3275 * 4140 41 0 * * * * * * 2513 0 0 S 42 * * * 3763 * * * * 1498 3654 * * * * 2123 1925 * * * * 42 104 3848 * 2585 263 * * 2513 1000 0 S 43 3848 * 1939 * * 2710 * * * * * 2939 * * 3432 2051 4246 * * * 43 131 3523 * 2322 322 * * 2513 1000 0 L 44 * 3432 * * * 2120 * 3275 * 1191 * * * * * * * 2877 * * 44 157 3275 * 1000 1000 * * 2513 1000 0 E 45 * * 2399 2700 * 1308 * * 4140 * * 3275 * 3432 * * * * * * 45 143 3406 * 1000 1000 * * 2513 1000 0 E 46 * * 2680 1351 * * * * 2805 * * * * 3654 3432 2868 * * * * 46 119 3654 * 1000 1000 * * 2513 1000 0 D 47 * * 915 * * * * * * * * 2638 * * * 2868 3654 3432 * * 47 0 * * * * * * 2513 0 0 E 48 3406 * 2120 990 * * * * * * 3654 * * * * * 3432 * * * 48 0 * * * * * * 2513 0 0 E 49 * * 383 2700 * * * * * * * * * * * * 3654 * * * 49 0 * * * * * * 2513 0 0 S 50 * * 2419 * * 2868 * * * * * * * * * 565 * * * * 50 0 * * * * * * 2513 0 0 G 51 * * * * * 140 * * * * * * * * * 3432 * * * * 51 0 * * * * * * 2513 0 0 L 52 * * * * * * * * * 315 3275 * * * * * * 3432 * * 52 0 * * * * * * 2513 0 0 S 53 * * 2033 * * 3152 * * 3296 * * * * * * 885 * * * * 53 0 * * * * * * 2415 0 0 L 54 * * * * * * * * * 0 * * * * * * * * * * 54 0 * * 0 * * * 2415 0 0 //