HHsearch 1.5 NAME c9lj0B_ FAM FILE c9lj0B_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9lj0B_.a3m DATE Sat Jan 24 12:51:56 2026 LENG 94 match states, 94 columns in multiple alignment FILT 109 out of 1086 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.1 EVD 0.4496 0.0907 SEQ >ss_pred CEEEEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCEEEECCCCEEEEEEEECCHHHCEEEEEEEECCCCCCEEEECCCEEEEC >ss_conf 9589899741206888799999788887579999607767765651477414766899981036131656999884177754279769859979 >Consensus xVtLxCxxsxxxxxxxxixWYrqxxgxxxxxlxxxxxxxxxxxxxxfxxxxxxxxxxLxIxxxxxxDsgxYyCaxxxxxxxxxxxfGxGTxLxV >c9lj0B_ RVTISCSGSSSNIGSNNVYWYQQLPGMAPKLLIYNNFQRPSGVSDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLSGLYVFGTATKVTV >UniRef50_UPI000155BB8A(44-136:165) PREDICTED: similar to hCG2039686 n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155BB8A E=7e-11 s/c=0.73 id=18% cov=98% -VTFQCRMTGEAMKNYHMNWYRKNPDASLIFIYRQGDIFGPGLRGLFEGkvDSAKNLFTLKLLRATVSDVGTYYCTADIHSATAPLTARSETHL-- >UniRef50_Q9IAL5(34-125:226) T-cell surface glycoprotein CD8 alpha n=5 Tax=Salmoninae RepID=Q9IAL5_ONCMY E=0.0006 s/c=0.49 id=17% cov=95% RVEITCAPVSKTKSNMVI-WFRVQDNAGMEFIASFSTKdgmKKTDFNNEVFSEEQINKNILILKAFkKARDSGVYSCASINGNA---LVFGEVTRL-- >UniRef50_Q0V9E4(37-135:209) Putative uncharacterized protein MGC147231 n=2 Tax=Xenopus (Silurana) tropicalis RepID=Q0V9E4_XENTR E=2e-05 s/c=0.50 id=22% cov=100% -VTLQCHYTLSSTENGSLGWYRWYRHvlGGPEVSnnsrNYTGRVSSACQSDCSSEFINNRSASIQLHRVQIPDTGVYICEVALELSRTLQGHGNGTFLNV >UniRef50_UPI00017F0C61(282-373:585) PREDICTED: similar to signal-regulatory protein alpha n=1 Tax=Sus scrofa RepID=UPI00017F0C61 E=5e-05 s/c=0.53 id=22% cov=97% --TLSCSV-PDSFPKGPVLWFKGTgPNRQLIYSFR-GGLFPRVKKTGNTTKAGNTDFSIRISEISLADAGTYFCVKFKEGKPDIEYqSGQGTQVTV >UniRef50_UPI0000ECB164(15-108:254) Programmed cell death protein 1 precursor (Protein PD-1) (hPD-1) (CD279 antigen). n=3 Tax=Gallus gallus RepID=UPI0000ECB164 E=1e-05 s/c=0.54 id=21% cov=100% -ATFICNISMENSSlEFNLNWYQKTNNSNPQKIAGIIRNIPQKKMEKYRLFNNTPVFKMEILNLHQNDSGFYYCGLITFSRSDKVVESSHSQLVV >UniRef50_UPI0000E7FDD4(38-122:193) PREDICTED: similar to T-cell receptor gamma V2.9 n=1 Tax=Gallus gallus RepID=UPI0000E7FDD4 E=7e-05 s/c=0.57 id=22% cov=71% -----------DFDNTVIHWYQLKENKPPERLLFFaegkTRVESGFQENKYMADNVSSQnlSILTINHVSPDDDATYYCAYWD----------------- >UniRef50_Q5BJL9(40-132:307) Tcrb protein n=5 Tax=Eutheria RepID=Q5BJL9_RAT E=2e-05 s/c=0.54 id=20% cov=95% ---LRCILKNSQY--PFMSWYQQDLQKQLQWLVTLRSPGDKEVKSLPGVDYLATRVSdteLRLQVANMSQGRTLYCTCSDRANQAQ-YFGEGTRLSV >UniRef50_UPI00006A1A25(39-146:148) UPI00006A1A25 related cluster n=5 Tax=Xenopus (Silurana) tropicalis RepID=UPI00006A1A25 E=0.0003 s/c=0.43 id=21% cov=98% ---LTCTVTGasltDSTNMYGVQWVRQPAGKGLEWlgaiWHDASTGYATTVQGRLTLSRDTNKgeVYFKLTEAKPEESATYYCArlalldlLHSDAFLRL STWGSGINVNV # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * * * * * * 1408 * * * * * 682 * * * * * 1 0 * * * * * * 4409 0 0 V 2 2649 * * * * * * 3632 * 4438 * * * * * * * 486 * * 2 0 * * * * * * 7938 0 0 T 3 5882 * * 5201 * 5511 6333 5452 4081 6530 6289 3382 * 4421 4388 3935 957 4476 * * 3 0 * * * * * * 8106 0 0 I 4 * * * * 3854 6022 * 2041 * 759 3618 * * * * * * * * * 4 0 * * * * * * 8238 0 0 S 5 * * 5347 3694 * 6444 4282 6278 4077 6698 * 2885 3299 3357 3922 2562 2616 6768 6468 * 5 0 * * * * * * 8238 0 0 C 6 * 47 * * * * * * * * * * * * * 6022 * * 5898 * 6 44 * 5063 * * * * 8238 0 0 S 7 4106 * 5034 4692 5391 5513 4866 3447 3391 5679 6063 4408 5368 4111 5529 2353 2433 5568 * 5770 7 90 6659 4301 0 * 1547 604 8214 1000 2154 G 8 3475 6734 6614 * 3251 5068 4001 4524 * 3245 3835 5692 4415 * 6269 6614 5553 2433 * 2488 8 53 5602 5995 2177 361 * 0 8163 1731 2898 S 9 * * 4415 4157 * 6338 * 4299 3158 5180 * 3958 6578 5489 4203 1317 3177 6387 * 5720 9 172 4664 3771 456 1884 163 3224 8113 2352 3383 S 10 5505 * 3290 5032 * 2201 6701 5188 4151 5352 6226 5088 4843 5443 * 1866 2991 6757 * * 10 107 4457 5286 1219 810 956 1045 8188 2869 4218 S 11 * 4864 3785 4004 3543 3185 6415 * 4532 4569 * 4957 5029 3399 6354 1980 3946 5443 5221 * 11 125 4491 4704 905 1101 1131 880 8204 1966 3664 N 12 4694 5542 2920 4777 5401 5828 6487 3508 6615 4164 5028 3451 4556 4843 6464 2387 3806 3611 * 6684 12 153 5916 3572 2322 322 1908 447 8207 1000 3821 I 13 3864 5402 * 4880 2678 4277 6191 4396 4431 2571 4924 * 5130 4394 5467 4138 3757 3648 * 4385 13 158 5146 3725 612 1533 446 1910 8194 1720 4889 G 14 3909 * 3157 4866 * 2502 * 6651 4354 6446 * 3968 4753 3569 5699 2259 3292 6499 * 6206 14 48 6160 5721 0 * 1912 446 8198 1000 4595 S 15 4978 * 4262 3599 6576 3530 3167 6534 4518 * 5216 2477 * 6539 3930 2438 4571 5075 * 4985 15 43 * 5094 * * 503 1765 8216 0 4378 N 16 4362 5423 3749 5165 3547 4768 4619 * 5916 5071 5203 4032 3773 4172 6640 3920 2984 4550 6365 2811 16 70 * 4404 * * * 0 8252 0 3333 N 17 3283 * * * 4277 4317 3856 5090 4326 4169 * 3608 6084 4519 4662 3505 2984 4524 4752 3099 17 68 5424 5451 1582 587 296 2429 8209 1662 4581 V 18 6033 * * * 5067 * * 1883 * 2313 2643 * * * * * 5590 1798 6142 * 18 31 6587 6561 1000 1000 2059 396 8236 1000 2536 Y 19 5820 6500 5642 5607 2536 4827 2701 5547 * 4021 6227 3805 * 5219 5348 3243 4286 6616 * 2451 19 15 6608 * 1000 1000 435 1942 8209 1000 2602 W 20 * * * * * * * * * 5449 * * * * * * * * 33 * 20 53 4784 * 0 * * 0 8258 2429 1000 Y 21 * * * * 2652 5773 4756 5131 * 5728 * * * * 6487 5113 6606 4988 6854 626 21 21 6101 * 0 * 0 * 8258 1153 1000 Q 22 * * * * 4786 * 5547 * 2015 4831 6639 6186 * 2781 1239 * * 4946 5357 6624 22 73 6531 4693 0 * * * 8269 1000 0 Q 23 * * 6427 5784 6041 6275 3811 4308 4298 4330 * 6855 5587 843 6174 * 4731 5031 5048 5603 23 13 6856 * 2000 415 908 1098 8224 1000 2749 L 24 4595 5494 3473 4491 6982 * 5787 5762 2755 3908 5190 3681 3943 3684 5038 3706 3128 4575 * 5003 24 59 4649 * 300 2414 1080 924 8260 2729 1581 P 25 4061 * 4943 3695 4783 5470 6524 * 4304 3381 5712 4960 1969 6046 4617 2602 4724 5117 * 5628 25 58 5542 5808 1357 714 0 * 8269 1770 1000 G 26 5960 * 4284 6706 * 1098 4812 * 3875 * * 2645 6636 4042 5369 4410 6534 * * 4662 26 19 6248 * 1000 1000 0 * 8269 1000 1698 M 27 3645 * 4265 3258 7116 2735 6684 * 2009 * 7304 5357 * 3153 4245 3145 5700 * * 5660 27 13 6839 * 1000 1000 * * 8279 1000 0 A 28 3112 6974 5683 3132 6668 2690 5202 * 3831 5457 5660 4770 3305 4287 4906 3734 3480 4297 * * 28 28 5722 * 2322 322 * * 8279 1216 0 P 29 * 6543 4846 4752 5676 * 4204 4487 * 1779 4343 5470 1607 4679 5190 6723 5617 6485 * * 29 12 6894 * 1585 585 * * 8279 1000 0 K 30 6874 * 5659 2366 5319 5329 5551 4342 3489 3626 5985 * 4576 2099 3770 5806 4479 4061 * * 30 26 6684 6933 1585 585 * * 8279 1000 0 L 31 6337 * * 4782 2487 5062 4239 3583 4725 2120 5895 6908 * 5753 4002 5711 5058 5390 3638 3658 31 77 4590 6540 1717 523 * 0 8277 2554 1000 L 32 6880 5164 * * 3948 * * 2152 * 1328 4315 6727 6522 * * 4837 6751 3131 6110 4973 32 142 3558 6860 1975 423 * 0 8258 4049 1177 I 33 3659 * * 5538 2905 5138 4606 2525 * 2427 4921 6175 * * 6533 3849 5129 2988 * 4185 33 63 4546 * 1739 514 * 0 8246 3100 1687 Y 34 6165 6503 5861 * 4631 4309 4719 * 6620 4108 6795 4762 * 5690 3246 3393 2746 * 6185 1590 34 14 6734 * 2585 263 771 1273 8246 1000 1687 N 35 4872 * 6351 4732 3993 3316 4976 3337 5296 3299 5225 4330 * 4939 6550 3219 3405 4542 6858 3036 35 59 4635 * 2390 305 * 0 8268 2560 1000 N 36 4566 * 3502 5164 6647 3226 4366 5036 5000 5829 5615 3029 5808 5301 4551 2486 3916 4856 * 3492 36 66 4486 * 1577 589 * 0 8268 3047 1000 F 37 4014 * 4294 4630 5242 3169 4455 6525 3606 5561 5737 3982 5349 * 4517 2437 2855 5075 * 4424 37 69 4426 * 1867 462 * 0 8268 2461 1000 Q 38 3569 * 4596 5077 6411 3049 4792 6021 4182 4124 5022 2792 5398 4392 3907 4474 3908 4147 * 3898 38 88 4076 * 2092 386 * 0 8268 3385 1000 R 39 4048 * 3961 4501 4635 3944 5860 5545 3348 4303 6724 3299 * 3862 4722 2966 4163 5088 * 3217 39 74 4327 * 2237 344 * 0 8268 3667 1000 P 40 5452 5943 4245 3595 4918 3619 5862 7010 3251 5378 5785 3862 2982 4875 6825 2667 4260 3782 * 5783 40 52 4815 * 1870 461 0 * 8268 2579 1000 S 41 4274 * 3438 3591 * 4756 5728 5362 3848 6648 6722 3520 3460 4408 4886 2770 2727 4953 * 6046 41 78 4937 5637 2646 251 * * 8279 2574 0 G 42 4658 6205 4869 4115 3237 2558 5823 3751 4070 5134 5346 4771 5584 4478 4823 4045 3938 3921 * 4477 42 46 5002 * 1542 607 895 1114 8278 2238 1687 V 43 * 4844 4662 3545 3114 4160 5214 5966 3977 3485 * 5449 5570 4500 4030 3166 3989 3344 6648 4620 43 33 5475 * 2010 412 * 0 8272 2041 1000 S 44 3993 * 4133 3055 5550 4224 6802 6974 2266 6035 5694 3584 3687 5487 3264 3168 * 5704 * 6998 44 39 7174 5680 0 * * 0 8272 1000 1000 D 45 3860 * 3086 2853 * 2554 6838 6791 5652 5906 * 3638 4932 5052 5250 2401 4460 5407 * 5478 45 74 4315 * 1957 429 567 1621 8253 3331 2241 R 46 5930 6211 4262 4217 5544 3912 4075 6641 2835 4617 * 5278 6651 5102 1479 3698 6035 * * 6625 46 123 3804 6637 1687 536 * 0 8272 3622 1000 F 47 5319 * 5410 6467 1225 6938 6004 3115 * 3333 5747 6632 4084 * 6922 4553 * 4053 * 3735 47 60 4615 * 1998 416 1000 1000 8263 3010 1656 S 48 5034 5383 4888 3111 5238 4992 4892 6768 5539 6550 6867 5652 5574 3626 5632 1979 2155 4874 * * 48 41 5174 * 2034 404 * 0 8270 2282 1000 G 49 2602 * 5299 3607 4881 2749 6874 3672 4210 3766 4723 5957 6602 5234 5456 4041 5596 3120 * 5606 49 66 4493 * 1821 480 0 * 8270 2948 1000 S 50 4633 * 2904 3322 5287 4916 4997 5550 4742 5510 5565 2837 4811 5365 3294 3156 3742 5199 5775 * 50 26 6829 6839 1000 1000 * * 8279 1000 0 K 51 4593 6604 * 5095 4570 4326 5452 3568 2735 3575 6946 4356 4673 4544 3209 3528 3520 4607 * 5401 51 105 3838 * 1773 499 * 0 8271 4144 1000 S 52 4705 * 3151 3902 5871 4568 5939 6867 3079 3949 6650 3339 3974 4175 4949 2608 4617 4836 * 6056 52 49 4892 * 2585 263 * 0 8271 2223 1000 G 53 4404 * 4131 4539 5850 2611 * 5599 3005 6743 6637 2672 4860 3908 3442 3848 4088 5915 * 6345 53 83 4166 * 1364 710 0 * 8271 3534 1000 T 54 5598 5716 4753 6485 * 2744 6723 * 3051 5115 6727 2542 4724 4109 3656 2673 3462 * * * 54 87 4093 * 1089 916 * * 8279 3662 0 S 55 5350 4725 3214 4183 6153 5709 * 5716 3559 4199 6668 3655 6722 4184 3982 2510 3278 3803 6991 6912 55 105 3835 * 1403 685 * * 8279 4060 0 A 56 3095 4082 * * 2173 4155 5391 5837 * 3573 * 5503 * * * 2730 5226 3045 * 3321 56 79 4232 * 424 1973 * * 8279 3025 0 S 57 6845 * 5319 6659 4721 7047 3967 4058 5566 5513 * 3599 6641 6778 5288 1648 2268 5094 * 4045 57 55 4745 * 1260 780 * * 8279 2141 0 L 58 * * * * 4281 * * 3457 * 317 4653 * * * * 6055 * * * * 58 13 6778 * 1000 1000 * * 8279 1000 0 A 59 6053 5609 * 3619 5402 * 3622 4274 3060 5185 5587 5293 5716 4217 3915 4195 1830 4112 * * 59 0 * * * * * * 8279 0 0 I 60 * * * * * * * 908 4757 2187 5043 6055 * * * * * 2689 6659 * 60 0 * * * * * * 8279 0 0 S 61 6684 * 6839 5738 5775 6864 5065 5297 2733 3341 * 3435 5014 3539 3053 2560 3033 6648 * * 61 0 * * * * * * 8279 0 0 G 62 3563 * 3744 3689 5439 4624 4634 * 5713 * * 1788 7171 5294 3397 2553 7019 5404 * 5538 62 0 * * * * * * 8279 0 0 L 63 2506 * * * 4253 * * 4527 * 1773 5122 * 5754 6574 * 4075 3474 2131 * * 63 15 6627 * 0 * * * 8279 1000 0 R 64 * * 4458 2999 6991 5111 4643 5355 3586 4527 6425 4168 * 2026 3195 3428 3529 * * * 64 0 * * * * * * 8279 0 0 S 65 5136 * 6944 3796 4754 5960 * 4119 3251 2376 4986 6864 2314 5558 * 4599 3812 3326 6879 * 65 0 * * * * * * 8279 0 0 E 66 4222 * 3551 2167 * 4160 5797 * 6846 * 6659 3482 6256 4656 4619 1655 4463 * * * 66 0 * * * * * * 8279 0 0 D 67 * * 187 5207 * * 5144 * * * * 4931 * 5404 * 6644 * * * * 67 0 * * * * * * 8279 0 0 E 68 3171 * 5009 2699 * 4621 6651 6574 4347 * 5724 4828 * * 6643 1342 3154 5457 * * 68 0 * * * * * * 8279 0 0 A 69 1785 * 5328 * * 772 * * * * * * * * 5404 4622 5724 5945 * * 69 0 * * * * * * 8279 0 0 D 70 * * 4131 6978 6319 * 5735 3291 5546 4008 3866 5617 * * 5080 4344 1630 2197 * 6778 70 0 * * * * * * 8279 0 0 Y 71 * 6612 * * 5724 * * 6547 * 5404 * * * * * * * * * 95 71 0 * * * * * * 8279 0 0 Y 72 * 6543 * * 2083 * 4171 5366 6653 3211 6500 5846 * 6190 6569 6627 4454 * * 1161 72 10 * 7153 * * * * 8279 0 0 C 73 * 49 * * * * * * * * * * * * 6600 * * * * 5444 73 43 7094 5483 2000 415 * 0 8249 1000 1000 A 74 1208 5159 * 5457 5404 2875 5990 5410 5669 5676 5745 * * 3111 * 4721 3977 4566 * * 74 77 5000 5585 1998 416 1533 612 8185 2260 2191 A 75 2666 3829 * 4894 5211 5726 5657 4968 3877 4145 4569 * * 6273 * 3180 4062 1938 * 5069 75 182 4654 3663 1916 444 1875 459 8211 2291 2629 W 76 5068 * 5505 * 4803 4267 6180 3372 5180 6434 * 5031 * 4711 4620 2176 6105 3553 2421 3416 76 42 5899 6381 1000 1000 3076 182 8364 1000 3943 D 77 4587 6201 2816 2966 5257 6785 3379 3910 5303 3888 6274 4635 6439 3312 * 3792 3782 5287 * 4373 77 147 4776 4046 956 1046 2329 320 8093 2201 4029 D 78 5206 * 4054 4353 4976 2741 4594 6521 4279 4243 * 3814 * * 3054 2595 3057 6146 * 4856 78 104 5132 4608 0 * 985 1015 8041 1128 4487 S 79 2342 * 4457 * 5879 4429 3740 * * 4188 * 2842 4314 5858 5933 2595 3460 5113 4540 6333 79 115 5897 4068 1000 1000 1986 420 8180 1000 4026 L 80 2839 * 3966 * 5819 3256 5874 3940 * 4886 * 3222 3577 * 4542 2358 3963 4760 * 5164 80 165 4840 3769 0 * 2206 352 7960 1622 4365 S 81 3578 4307 5660 * * 3321 * 5745 6334 4754 5885 2922 * 4307 4589 2595 2182 * 5561 5072 81 127 * 3565 * * 1708 527 7884 0 4569 G 82 3269 5744 3109 3462 4626 2190 * * * 4549 * * 4248 4882 5808 6110 3792 * 4322 2970 82 50 5837 5918 0 * 1179 841 7840 1000 4904 L 83 5357 * 4179 2880 3765 5755 5981 5742 2580 3093 5842 4872 3112 4449 6212 4880 4411 3920 * * 83 71 6189 4866 2807 222 390 2079 7978 1000 4037 Y 84 4047 * 4872 6071 3980 6021 5940 3061 4951 1697 4902 6046 * 4334 * 4390 4609 3298 5422 5438 84 66 5054 6073 469 1851 399 2049 8072 1708 2701 V 85 * 5774 * 4894 3986 5659 6098 2940 5255 4398 4905 * * 5192 5876 * 2832 1997 * 2490 85 31 5536 * 1585 585 * 0 8104 1000 1575 F 86 5927 5753 * 4671 685 * 5646 * * 4137 * * * 4907 * 5577 5762 * 3376 4106 86 60 5726 5515 3000 193 1000 1000 7832 1000 1575 G 87 4714 * * * * 371 * 4435 * 5724 * * 5916 5110 5910 4033 * * * * 87 0 * * * * 1032 969 7679 0 1619 T 88 5634 5879 4756 3049 * 4693 * * 4073 * * 3195 3137 3265 5259 2104 3043 * * * 88 0 * * * * * 0 7647 0 1000 A 89 6223 5722 * 5845 * 178 5486 * * * * * * * * 5231 * 5852 * * 89 0 * * * * 0 * 7576 0 1000 T 90 4690 5853 * * * * * 4310 * * * * * * * 3563 306 * * * 90 0 * * * * * * 7603 0 0 K 91 4578 5108 * 3571 3269 * 4293 5685 2250 4615 5915 4919 * 3943 2297 5244 4505 5003 * * 91 0 * * * * * * 7603 0 0 V 92 * * * * * * * 5675 * 305 * * * * * * * 2550 * * 92 0 * * * * * * 7421 0 0 T 93 4599 * 5076 3981 5317 * 5889 3316 * 4892 5718 3604 * 5076 3319 2703 1930 4549 * * 93 0 * * * * * * 7316 0 0 V 94 * * * * * * * 2625 * * * * * * * * * 255 * * 94 0 * * 0 * * * 7274 0 0 //