HHsearch 1.5 NAME c9jmkV_ FAM FILE c9jmkV_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9jmkV_.a3m DATE Sat Nov 1 10:55:02 2025 LENG 87 match states, 87 columns in multiple alignment FILT 102 out of 235 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.3 EVD 0.4545 1.0962 SEQ >ss_pred CCHHHHHHCCCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC >ss_conf 951566551242379998877438839999868689899999999997794357899860886200166678369813999991698 >Consensus xxxxxxiixxPvxTEKsxxxxexxnxyxFxVxxxatKxeIKxavExxfxVkVxxVnTxxxxgKxkRxxxxxgxxxxxKKAiVtLxxG >c9jmkV_ EERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEG >UniRef50_C6V4D1(5-86:94) Ribosomal protein L23 n=2 Tax=Neorickettsia RepID=C6V4D1_NEORI E=8e-08 s/c=0.71 id=30% cov=93% -------LIGPlVVTEKSCLLKDSLGKISIFAPVSATKKQVRSLFLERFKgIKILAVNSVLTCGKSKRFKGKSGKRSDKKKFILTIDGG >UniRef50_Q16540(32-102:153) 39S ribosomal protein L23, mitochondrial n=6 Tax=Homininae RepID=RM23_HUMAN E=3e-05 s/c=0.70 id=24% cov=80% ------------------GVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRdhRNVRIKKPDYKVAYVQLAHG >UniRef50_O52334(2-88:108) 50S ribosomal protein L23 n=2 Tax=Mycoplasma RepID=RL23_MYCGA E=7e-12 s/c=0.82 id=29% cov=95% --QITDVLIKPILTEKTYGiMMSEPRKYTFLVNAKANKNYIKQAFKAIYGVTPIAVNTKIKKPARVRTGtQNPGYSRLEKIAIITV--- >UniRef50_Q06SH7(1-84:118) 50S ribosomal protein L23, chloroplastic n=1 Tax=Stigeoclonium helveticum RepID=RK23_STIHE E=2e-16 s/c=1.03 id=25% cov=97% ---MIDLIKYPVINFKSYRALVLNNQYMFNVDLRLTKPQIKKLIEQYFEVNVISVNTHRPPRKKRlYIQTSPGYKKRYKRVIITLQK- >UniRef50_C5KBC3(30-100:239) Ribosomal protein L23, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KBC3_9ALVE E=7e-10 s/c=0.92 id=30% cov=80% -----------------SGMYLEPNRIAFRVPVHLTKLEIREYLRKIYGVKAIRCTTVVRFPKVMKNRARAYYKNGaqFKKAIVTCEE- >UniRef50_UPI00005A4969(68-135:175) PREDICTED: similar to 60S ribosomal protein L23a n=2 Tax=Eutheria RepID=UPI00005A4969 E=2e-08 s/c=0.88 id=25% cov=63% ------IVKFSLTTKSAMKNIEDNNTFVFIVDAKANKHQIEQAGETLYDIDTANVTTLTC--------------------------- >UniRef50_Q09727(31-90:161) Uncharacterized protein C31A2.08 n=1 Tax=Schizosaccharomyces pombe RepID=YA48_SCHPO E=7e-05 s/c=0.81 id=22% cov=69% ---------------------------VFRVPLHVNKFDVRDYLQHVYNLKVVSVKSRIYQGKLFRNQLGQVKRPqSEKRVIVEMEE- >UniRef50_Q98RV5(34-102:117) 60S ribosomal protein L23A n=2 Tax=Cryptophyta RepID=Q98RV5_GUITH E=1e-06 s/c=0.79 id=29% cov=80% ---IYKQLIYPVTSESAMKKIQTSNTLTFLVEPMNNKNSLKKIISKLFKVKTIKINSLISMNGKKKIFVKLG--------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * * 595 * * * * 1564 * * * * * * * * * * * 1 0 * * * * * * 1863 0 0 E 2 * * * 774 * * * * 1268 * * * * * * * * * * * 2 0 * * * * * * 2299 0 0 R 3 * * * 4050 * * * * 1566 * * 1800 * 3681 2078 * * * * * 3 0 * * * * * * 3653 0 0 L 4 5125 * * * 3894 * * 2066 * 1411 1952 * * * * * * * * 5015 4 0 * * * * * * 4441 0 0 L 5 6183 * * * 2871 * 5743 4075 5778 4454 2718 5971 5927 5744 6038 4271 4085 6000 * 1461 5 0 * * * * * * 4950 0 0 K 6 5261 * 1436 3816 * 4752 6348 * 3342 * 6250 3610 * 3429 4130 2959 6414 * * * 6 0 * * * * * * 4997 0 0 V 7 * * * * 5160 4728 * 1652 4095 2769 * * * 4648 * * 6400 1478 * * 7 0 * * * * * * 5069 0 0 L 8 * * * * 5581 * * 951 * 1446 * * * * * * * 3396 * * 8 0 * * * * * * 5129 0 0 R 9 5821 * * 5754 * * * 2361 1188 3283 * * * 5271 3330 * 5501 3646 * * 9 0 * * * * * * 5155 0 0 A 10 3673 5538 * 5366 5166 3972 4449 * 2131 6499 6216 5801 * 6475 3463 3286 4229 * * 2252 10 0 * * * * * * 5155 0 0 P 11 3865 * * * 5824 5721 * 6068 * * * * 458 4442 * 4742 * 3863 * * 11 38 5272 * 570 1616 * * 5333 1753 0 H 12 * * * * 6012 * 4622 2258 * 2203 4626 * * 6800 4237 * * 1581 6204 3893 12 0 * * * * * * 5333 0 0 V 13 6659 * * * 4510 * 6313 2213 5641 2086 * 6323 6499 5342 6389 4416 3368 2037 * 6068 13 0 * * * * * * 5333 0 0 S 14 * * * * * * * * * * * 4315 * * * 2162 461 * * * 14 0 * * * * * * 5333 0 0 E 15 * * 3083 378 6118 5864 * * 6110 5977 * * 6358 6541 * * 5171 * * * 15 0 * * * * * * 5333 0 0 K 16 * * * 5115 * * * * 161 6653 * * * * 6409 4569 * * 6266 * 16 16 6538 * 1000 1000 * * 5356 1000 0 A 17 2092 * * * * 5038 * 6307 5205 * 5294 4366 * * * 1372 2368 4599 * * 17 33 5488 * 3426 141 * * 5356 1549 0 S 18 4478 5141 6339 6545 5124 * * 3013 * 4377 3306 3282 * * * 3124 2258 4142 * 3074 18 54 6376 5328 0 * * * 5416 1000 0 T 19 3932 * 6003 5299 6624 3273 6676 4858 2411 3668 4532 3393 * 4614 2979 3707 4691 4893 * 6172 19 39 6310 6172 0 * 0 * 5455 1000 1635 A 20 2866 * 6419 5196 * 6955 6309 4579 3800 1390 4476 4884 * 3065 6684 5078 6569 4507 5976 * 20 32 6240 6857 3322 152 0 * 5454 1000 1000 M 21 3429 * * * 5540 3886 6174 2783 4532 2331 3585 * 5768 4812 3043 3556 4782 5471 * 6120 21 79 5386 5077 1555 600 0 * 5473 1573 1000 E 22 5661 6846 3999 1001 5795 4224 * * * 3923 * 4580 * 3978 6647 3688 4937 4734 * 6825 22 53 * 4805 * * 0 * 5482 0 1534 K 23 4902 6525 4126 2395 6092 6032 * * 1865 6139 * 3567 5670 3409 3742 4225 4481 5756 * * 23 341 6728 2313 1000 1000 0 * 5371 1000 2076 S 24 4574 * 3639 3483 5052 3610 4639 4190 4375 3399 4504 2475 5071 4805 5923 3904 3931 * * * 24 0 * * * * 0 * 5373 0 3815 N 25 * * 5925 5755 * 3193 * * 2850 * * 905 6868 * 3126 4381 * 6397 * * 25 33 6251 6670 1605 575 * * 5709 1492 0 T 26 * 6210 6845 5128 * * 6615 5199 1984 * * * * 2057 3280 6658 2565 3298 * 4832 26 0 * * * * 0 * 5717 0 1000 I 27 * * * * 4871 * * 3004 * 2976 6854 * * * * 6313 6462 2749 6404 941 27 0 * * * * * * 5563 0 0 V 28 3370 5579 * 5735 5399 5176 5694 6473 * 5032 5278 * 7007 5102 * 4247 1548 1802 * 7132 28 0 * * * * * * 5578 0 0 L 29 7185 * * * 328 * * 4156 * 4229 6359 * * * * 4698 * 5214 * 6753 29 18 * 6359 * * * * 5611 0 0 K 30 5734 * 4137 2992 6146 * 5118 2788 2611 3620 * 4015 * 3955 3381 6164 * 3467 6127 5323 30 0 * * * * 0 * 5602 0 1000 V 31 3715 4534 6525 * * * * 4845 * 5258 * * * * * * 3874 433 * * 31 0 * * * * * * 5611 0 0 A 32 3241 * 1416 3726 5168 6359 4334 * * 6694 * 3920 3171 5144 4247 3790 6128 * * * 32 0 * * * * * * 5611 0 0 K 33 4748 6132 * * * * * 3922 2238 3193 4377 6878 2211 6580 3048 5058 5450 3261 * * 33 28 6892 6525 1585 585 * * 5611 1000 0 D 34 5441 * 2887 4006 6225 4319 4577 * 2647 * 6219 2713 * 4326 2294 3959 5559 * 6734 * 34 0 * * * * 0 * 5615 0 1000 A 35 1081 6738 * * * * * 5818 * 3209 3135 6276 5628 * * 3736 5824 3019 * 5097 35 0 * * * * * * 5611 0 0 T 36 6947 * 6243 * * 6132 5397 * 6694 * * 1300 * * 6433 3262 1289 * * * 36 0 * * * * * * 5611 0 0 K 37 * * * * * * * * 158 * * * * 5667 3573 * * * * * 37 0 * * * * * * 5611 0 0 A 38 4911 * 5401 5688 5541 * 4107 3493 4752 3460 * 5400 3225 4841 3851 4872 2180 3841 * 3879 38 0 * * * * * * 5611 0 0 E 39 5900 * 2429 1374 * 5438 * * 5717 6493 6142 5393 * 2109 5361 5057 * 6589 6219 6570 39 0 * * * * * * 5488 0 0 I 40 4899 * * * 5505 * * 643 * 3782 5250 * * * * * * 2286 * * 40 0 * * * * * * 5488 0 0 K 41 4084 * * 5477 * 6605 * * 647 * 6236 * * 5596 2260 5221 * * * * 41 0 * * * * * * 5488 0 0 A 42 2937 * 4111 2905 * * 5020 6847 2088 4809 * 3660 * 3170 3169 4265 6134 * * * 42 0 * * * * * * 5488 0 0 A 43 986 6623 6633 4102 6083 * * 5439 * 4168 5774 6243 * * 5600 5437 * 5854 4517 2419 43 0 * * * * * * 5488 0 0 V 44 * * * * 2742 6675 * 1949 * 2242 6134 * * * * * * 1490 * * 44 0 * * * * * * 5488 0 0 Q 45 6630 * * 518 * * * 5496 3230 5366 * 6109 * 4191 6235 5536 4858 * * * 45 27 * 5733 * * * * 5488 0 0 K 46 3845 * 6020 3166 5336 4937 5112 5594 1857 4242 * 6231 * 3949 3844 3311 3301 7084 * 6583 46 0 * * * * 0 * 5453 0 1000 L 47 3644 6219 * * 4012 * 5774 1937 5631 1717 5046 6562 * 6630 4348 * 5102 3600 * 5095 47 0 * * * * * * 5488 0 0 F 48 * 6105 * * 874 * * * * 5167 * * 5600 * * 7084 * * 5732 1453 48 10 7116 * 1585 585 * * 5488 1000 0 E 49 6037 * 2829 3878 * 1828 * * 2524 * * 2210 * 4582 4990 5004 * * * * 49 38 5262 * 0 * * * 5488 1636 0 V 50 6539 * * 5621 6196 * * 2999 5415 3611 6083 * * * * 5732 5808 570 * * 50 27 * 5733 * * * * 5488 0 0 E 51 6049 * 5274 4615 * 6603 5837 * 1166 * * 3379 3221 5575 3811 4503 3402 6566 * * 51 0 * * * * * 0 5453 0 1000 V 52 6230 5593 * * * * * 3600 * * * * 3132 * * * 4556 460 * * 52 0 * * * * 0 * 5453 0 1000 E 53 3775 * 3881 3035 * * * 2823 3320 2670 * 5119 * 5949 4998 4311 4149 2871 * 5732 53 0 * * * * * * 5488 0 0 V 54 3145 * 2665 3960 * 4380 5774 * 1765 * * 4661 * * 3669 2553 6859 7118 * * 54 0 * * * * * * 5488 0 0 V 55 * 4592 * * * * * 2731 * * 4348 * * * * * 6303 423 * * 55 0 * * * * * * 5488 0 0 N 56 * 5428 * * * * 5670 * 4529 * * 809 * 5750 2196 4283 4186 * * * 56 0 * * * * * * 5488 0 0 T 57 * * * * * * * 4082 * 5643 6139 * * * * 2455 697 3219 * * 57 0 * * * * * * 5487 0 0 L 58 5463 5245 * 6336 6681 * 3416 3042 5013 2044 3501 * * 3888 4676 3994 4793 3112 * 5017 58 27 * 5758 * * * * 5485 0 0 V 59 * * * * * * 5658 2008 6870 6128 4547 1423 * * 2866 6816 5909 2940 * * 59 30 * 5584 * * 0 * 5451 0 1000 V 60 5205 5566 * 6607 5694 * * 5315 3556 3533 4133 5856 4457 4475 3292 4626 3509 2443 * 2770 60 28 5678 * 3644 120 * 0 5463 1550 1379 K 61 5145 6114 4486 5892 5118 * 6234 5526 2327 4288 3490 * 1932 4720 3578 4191 4880 5640 * * 61 58 * 4673 * * * 0 5450 0 1379 G 62 5532 * 6637 * * 979 * * 4167 * * 4720 2387 * 3384 3909 6166 * * * 62 50 5451 6464 885 1124 * 0 5445 1508 2446 K 63 4404 * 6243 5558 * 3866 6428 5725 608 * * * * 4672 3878 5297 5045 * * * 63 11 * 7087 * * * 0 5439 0 2430 V 64 3730 5906 5908 6661 4652 5639 6736 2966 2550 5091 * 3998 3955 6057 3121 3699 3560 4802 * 5082 64 57 5390 6068 2716 238 1892 453 5436 1665 2534 K 65 4126 * * 6500 * 6204 * 5601 802 * 6052 * * * 2249 5426 5008 5681 * 5341 65 114 3723 * 2029 406 * 0 5420 2989 2712 R 66 6310 * * 6292 * * * * 2461 6023 * 6407 * 4581 648 5297 5297 6159 6587 6542 66 76 4286 * 1000 1000 * 0 5411 2434 2712 H 67 3393 4680 6404 * 3612 6299 5633 4051 3455 5050 4079 4105 * 4535 3257 3310 4828 2932 * 5293 67 107 4057 6495 1044 957 * 0 5336 2423 2712 G 68 * * * * 6119 1340 * 6017 2670 * * 4767 * 6537 1770 6316 4432 * * 5765 68 85 4126 * 0 * * 0 5329 2381 2769 Q 69 4149 * 6262 * 4390 2797 6623 6692 2680 4445 4720 3304 4469 4572 2581 4463 5650 5182 * 5011 69 79 4238 * 844 1174 * 0 5329 2436 2769 R 70 4433 * * * 3077 3245 4256 3342 3529 5123 4649 4104 * 6590 2729 5211 4716 3602 * 4136 70 72 4783 6316 704 1372 * 0 5329 2207 2769 I 71 4337 * * 3896 4512 6292 * 3687 5243 2497 4191 5301 3077 4926 3973 3597 3597 4182 * 5064 71 62 4982 6554 2401 303 * 0 5325 1656 2906 G 72 5281 * * * * 577 6317 4324 * * * 5373 * * * 4631 5655 4559 4652 3739 72 17 6442 * 1585 585 1862 464 5324 1000 3036 R 73 * * * * 5332 * 4165 6169 1420 6336 5314 5483 5261 4463 2535 4377 * 5886 * 2618 73 0 * * * * 2180 360 5331 0 2521 R 74 6792 * 4791 3714 * 6627 6892 * 2721 4115 * * * 6407 1870 5323 1719 5274 * 6526 74 43 5087 * 1618 569 918 1087 5322 1817 2554 S 75 3569 6451 3875 4986 * 6436 * * 2344 7111 4963 3897 2035 6180 4504 2819 6527 4824 * * 75 18 6302 * 0 * 1667 545 5333 1000 1869 D 76 3664 * 1667 6600 5494 2755 4072 * 4437 4880 * 4416 * 6862 3445 3358 5867 * * 5374 76 42 5129 * 2312 324 895 1113 5338 1441 1578 W 77 * * 6206 4177 3276 * * 5484 3361 3985 5272 * * * 3789 * 5733 4323 2606 1672 77 15 6579 * 3000 193 0 * 5343 1000 1000 K 78 * * * * * * * * 114 * * * * * 3721 * * * * * 78 0 * * * * * * 5364 0 0 K 79 * * * 5643 * * * 4274 575 4713 * * * * 2630 * * 4500 * 6255 79 0 * * * * * * 5364 0 0 A 80 475 * * * 5277 * * 5972 * * 3198 * * * * * * 2943 * * 80 0 * * * * * * 5362 0 0 Y 81 * * * * 3719 * * 1024 * 5134 * * * * * * 5435 3731 * 1711 81 0 * * * * * * 5362 0 0 V 82 * 6850 * * 4494 * * 2200 * 4510 * * * * * * 5526 592 * * 82 0 * * * * * * 5362 0 0 T 83 6596 * 6186 6228 5144 * 6699 * 3075 * * * * 3599 3133 4271 991 4932 * 5507 83 0 * * * * * * 5331 0 0 L 84 * 5896 * * 4731 * * 4664 * 409 4180 * * * * * * 3351 * * 84 0 * * * * * * 5347 0 0 K 85 2457 * 4264 3868 * 5290 5510 * 1977 * 6376 5257 3777 3956 3335 4154 * 4538 * 5507 85 0 * * * * * * 5432 0 0 E 86 4349 * 2976 1624 * 5687 4922 * 2357 * * 6632 3025 4471 * 5132 5494 5445 * * 86 0 * * * * * * 5208 0 0 G 87 * * * * * 0 * * * * * * * * * * * * * * 87 0 * * 0 * * * 5030 0 0 //